LOC120549387


Basic Information

Item Value
gene id LOC120549387
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 30681927 ~ 30703278 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU280377
ggacCTTTGCATAATCCACTTCCTCTTCACACTATCGCATCTTCTTCATTCGAGAGAAGACACCTCTTCACCGTAGCAGATAAACATGTCGGGGCTCCTGAGGACCATCGCCAGCCGTGCTGCTCCTGTGCTGCGGGGACACACAGTCACTCAGAGGGCAAATCTCTACGCTGGCCCGGCCAAGGAAAAGATCGGCACTGTTGAAACGATCATTGGACTGAGCATGTTCTCCCTGGCCATTCTGGGACCATCTGGATGGATCCTGGCCCACTTGGAGGACTACAAGAAGAAAGAATAATGTGGACATTTTAATAGTGTCATACCTCGTGCACCCATGTCTCCCGTCTTTGTTGACAACCTGGGACCATCATCATTATGTTCTGCTGCAGAGAAGAATATGGAACAAGTTTTACATTCACTCTTCTACCTCTCCGAAAGATTCACTCCACATCCCAACTGTTTCCAAACATAGACTCCTAATACATTGAAATTTGCATTGCAGATCTTCTCTCTTAAACAGTATGTTACAAGATTAAATTTTAAACCCAACTATGTTGcttgttgtgtgtattttatgtgtgtatatccTTGGGCTAAGG
>TU280378
ggacCTTTGCATAATCCACTTCCTCTTCACACTATCGCATCTTCTTCATTCGAGAGAAGACACCTCTTCACCGTAGCAGATAAACATGTCGGGGCTCCTGAGGACCATCGCCAGCCGTGCTGCTCCTGTGCTGCGGGGACACACAGTCACTCAGAGGGCAAATCTCTACGCTGGCCCGGCCAAGGAAAAGATCGGCACTGTTGAAACGATCATTGGACTGAGCATGTTCTCCCTGGCCATTCTGGGACCATCTGGATGGATCCTGGCCCACTTGGAGGACTACAAGAAGAAAGAATAATGTGGACATTTTAATAGTGTCATACCTCGTGCACCCATGTCTCCCGTCTTTGTTGACAACCTGGGACCATCATCATTATGTTCTGCTGCAGAGAAGAATATGGAACAAGTTTTACATTCACTCTTCTACCTCTCCGAAAGATTCACTCCACATCCCAACTGTTTCCAAACATAGACTCCTAATACATTGAAATTTGCATTGCAGATCTTCTCTCTTAAACAGTATGTTACAAGATTAAATTTTAAACCCAACTAaaaaaaaaaaaaaa
>TU280379
ggacCTTTGCATAATCCACTTCCTCTTCACACTATCGCATCTTCTTCATTCGAGAGAAGACACCTCTTCACCGTAGCAGATAAACATGTCGGGGCTCCTGAGGACCATCGCCAGCCGTGCTGCTCCTGTGCTGCGGGGACACACAGTCACTCAGAGGGCAAATCTCTACGCTGGCCCGGCCAAGGAAAAGATCGGCACTGTTGAAACGATCATTGGACTGAGCATGTTCTCCCTGGCCATTCTGGGACCATCTGGATGGATCCTGGCCCACTTGGAGGACTACAAGAAGAAAGAATAATGTGGACATTTTAATAGTGTCATACCTCGTGCACCCATGTCTCCCGTCTTTGTTGACAACCTGGGACCATCATCATTATGTTCTGCTGCAGAGAAGAATATGGAACAAGTTTTACATTCACTCTTCTACCTCTCCGAAAGATTCACTCCACATCCCAACTGTTTCCAAACATAGACTCCTAATACATTGAAATTTGCATTGCAGATCTTCTCTCTTAAACAGTATGTTACAAGATTAAATTTTAAACCCAAaaaaaaaaaaaaaa
>XM_039786271.1
gacCTTTGCATAATCCACTTCCTCTTCACACTATCGCATCTTCTTCATTCGAGAGAAGACACCTCTTCACCGTAGCAGATAAACATGTCGGGGCTCCTGAGGACCATCGCCAGCCGTGCTGCTCCTGTGCTGCGGGGACACACAGTCACTCAGAGGGCAAATCTCTACGCTGGCCCGGCCAAGGAAAAGATCGGCACTGTTGAAACGATCATTGGACTGAGCATGTTCTCCCTGGCCATTCTGGGACCATCTGGATGGATCCTGGCCCACTTGGAGGACTACAAGAAGAAAGAATAATGTGGACATTTTAATAGTGTCATACCTCGTGCACCCATGTCTCCCGTCTTTGTTGACAACCTGGGACCATCATCATTATGTTCTGCTGCAGAGAAGAATATGGAACAAGTTTTACATTCACTCTTCTACCTCTCCGAAAGATTCACTCCACATCCCAACTGTTTCCAAACATAGACTCCTAATACATTGAAATTTGCATTGCAGATCTTCTCTCTTAAACAGTATGTTACAAGATTAAATTTTAAACCCAACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280377 True 599 TUCP 0.45 2 30698876 30703278
TU280378 False 566 TUCP 0.45 3 30681927 30703278
TU280379 False 563 TUCP 0.45 3 30681927 30703278
XM_039786271.1 False 551 mRNA 0.46 2 30698923 30703277

Neighbor

gene id symbol gene type direction distance location
gabrb1 gabrb1,LOC103364303,LOC108247011,LOC106600539,LOC106926079 coding downstream 110175 30500242 ~ 30571752 (-)
atp10d atp10d coding downstream 200163 30422939 ~ 30481764 (-)
dapp1 dapp1 coding downstream 260439 30396745 ~ 30421488 (-)
zgc:123321 yipf7,LOC105917875 coding downstream 291855 30381739 ~ 30390072 (-)
hhipl1 hhipl1,LOC104946013,LOC102307847,LOC101469970 coding downstream 574221 30098783 ~ 30107706 (-)
LOC120549389 enpep coding upstream 11525 30714803 ~ 30743702 (-)
lrit3b lrit3,LOC102193314,LOC102307793,LOC101466384,LOC105919025 coding upstream 46953 30750231 ~ 30760842 (-)
LOC120548738 jkamp coding upstream 74526 30777804 ~ 30787857 (-)
LOC120549749 LOC103370732,LOC104968329,LOC104928167 coding upstream 227858 30931136 ~ 30939403 (-)
ankrd6a NA coding upstream 241201 30944479 ~ 30960293 (-)
LOC120549477 NA non-coding downstream 183635 30496770 ~ 30498292 (-)
LOC120549085 NA non-coding downstream 194422 30484785 ~ 30487505 (-)
LOC120548652 NA non-coding downstream 336521 30332529 ~ 30345406 (-)
G206966 NA non-coding downstream 488217 30193173 ~ 30193710 (-)
G206958 NA non-coding downstream 583192 30097563 ~ 30098735 (-)
G207104 daam1,LOC103373422 non-coding upstream 129265 30832543 ~ 30833569 (-)
G207145 NA non-coding upstream 165366 30868644 ~ 30942703 (-)
G207175 NA non-coding upstream 331518 31034796 ~ 31035354 (-)
G207203 NA non-coding upstream 472034 31175312 ~ 31177564 (-)
G207204 NA non-coding upstream 484097 31187375 ~ 31187646 (-)
G206919 ccdc88c other downstream 747361 29934262 ~ 29934566 (-)
LOC120549715 lrfn2,LOC103357516,LOC102785515 other downstream 2477479 28046205 ~ 28204448 (-)
LOC120549840 NA other downstream 2647175 28012039 ~ 28034752 (-)
G206198 fbxo33,LOC102800092 other downstream 3856863 26821688 ~ 26825064 (-)
LOC120549744 NA other downstream 5314060 25332890 ~ 25367867 (-)
G207202 NA other upstream 479745 31183023 ~ 31183555 (-)
G207327 arhgap5 other upstream 1272540 31975818 ~ 31979760 (-)
G207670 NA other upstream 1906257 32609535 ~ 32691885 (-)
LOC120549602 klhl18,LOC102789664 other upstream 1970675 32673953 ~ 32681902 (-)
LOC120548944 npas3 other upstream 2156281 32859559 ~ 32932010 (-)

Expression


Co-expression Network