XLOC_004966 (BX005305.1)


Basic Information

Item Value
gene id XLOC_004966
gene name BX005305.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46425800 ~ 46447830 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009716
AACCAAACACCTGGAGAGACACAGAAGAACAGCTGATACTTCACACAGACTTTGAAAAGCCTCAAGACATGTCTGGAAAAACATGggttctgcttgttgctggctcaAAGGACTGGGACAATTACAGACACCAGgCCAATGTGTGCTGTGCATATCAGTTAATGAAGAAGCAAGGAATTCCTGATGAGCAGATTGTGGTGATGATGTATGACGACATCGCTAATAATCCCAACAATCCCTTTCCTGGAAGCATCCGCAGTGTTGTTGATCAAACAAACGTGTACAAATCGGTGCCTCTGGACTACACTGGAAATAAGGTGAAATCGAAGAATTTTCTAGCCGTTCTTCGAGGGGATGACAGTGCTGGGGGGAAAATCATAAGAAGtaaaaaaaatgacaacataCTCATCTACATGTCAGGAGTGGGAAGTGATGCCAACTTTAAATTTCCTCAGGACTCTCTTGATGCACATCAGTtcacaacaacaataaacacTATGTCTGACAATAAGAAATACTCAAAGATGGTGATCTTCATGGACAGCGATAACTCTCAGTCAGTGTTCAAAGGCCTTTATACAAACATCCATGTCTATGGAGTGGCTTCATGTGACTCTGCTAACCAGAACAGAAGCGTTCAGAACGACCCTGACAGAGGCATTTACCTCTCAGATCAATTCTCAGCTGCCTGGCTGACGTTCATTTCTACGGCTGATCTTGAAAAAGCTACATTCAGTAAGCTGTTTGAGTACATCAAAAACAAAGATGATTCCTGTCCCTGCGAGATTGGAGACAAGGAAATTCCTAAACTTCTGATCAGTAACTTTCTGAAGTTGGAAGGCTGTTCAGACTGCGCTTGAGAAGACTTCTCCCTGAAGCGCTGATGAAAATGATCAGCATAATCTGATgaccttttcttttcttctttcaaaCCTCTGCATTAATGATTAGAACTGAATCGAGTGCAGCATTATATACGCTATCTGCTGACAGTTTGTGCTTAGTGAgattttaaaatggctttaactaAAAGAAATGCTTTAGATTAAATTGATGTGCTCCTGCTAAAGGTATTTTTTGTTTAGAAACATCATATTGATTTCCAACTGTCTGTGATTCTTTCATTTTACGTAACTGTAGCTAATGagctttttattatttagtttggaCTGGGTTTTTCCTttcttcttccttcttttttGATCTAAAATGACTTATTGGGACTGTGTGTGAACTAACaaccaaaaaaatgaataaaactggGAAAAGGG
>TCONS_00009717
AACCAAACACCTGGAGAGACACAGAAGAACAGCTGATACTTCACACAGACTTTGAAAAGCCTCAAGACATGTCTGGAAAAACATGggttctgcttgttgctggctcaAAGGACTGGGACAATTACAGACACCAGgccAATGTGTGCTGTGCATATCAGTTAATGAAGAAGCAAGGAATTCCTGATGAGCAGATTGTGGTGATGATGTATGACGACATCGCTAATAATCCCAACAATCCCTTTCCTGGAAGCATCCGCAGTGTTGTTGATCAGACAAACGTGTACAAATCGGTGCCTCTGGACTACACTGGAAATAAGGTGAAATCGAAGAATTTTCTTGCCGTTCTTCGAGGGGATGACAGTGCTGGTGGGAAAATCATAAGAAGtaaaaaaaatgacaacataCTCATCTACATGTCAGGAGTGGGAAGTGATGCCAACTTTAAATTTCCTCAGGACTCTCTTGATGCACATCAGTtcacaacaacaataaacacTATGTCTGACGATAAGAAATACTCAAAGATGGTGATCTTCATGGACAGCGATAACTCTCAGTCAGTGTTCAAAGGCCTTTATACAAACATCCATGTCTATGGAGTGGCTTCATGTGACTCTGCTAACCAGAACAGAAGCGTTCAGAACGACCCTGACAGAGGCATTTACCTCTCAGATCAATTCTCAGCTGCCTGGCTGACGTTCATTTCTACGGCTGATCTTGAAAAAGCTACATTCAGTAAGCTGTTTGAGTACATCAAAAACAAAGATGATTCCTGTCCCTGCGAGATTGGAGACAAGGAAATTCCTAAACTTCTGATCAGTAACTTTCTGAAGTTGGAAGGCTGTTCAGACTGCGCTTGAGAAGACTTCTCCCTGAAGCGCTGATGAAAATGATCAGCATAATCTGATgaccttttcttttcttctttcaaaCCTCTGCATTAATGATTAGAACTGAATCGAGTGCAGCATTATATACGCTATCTGCTGACAGTTTGTGCTTAGTGAgattttaaaatggctttaactaAAAGAAATGCTTTAGATTAAATTGATGTGCTCCTGCTAAAGGTATTTTTTGTTTAGAAACATCATATTGATTTCCAACTGTCTGTGATTCTTTCATTTTACGTAACTGTAGCTAATGagctttttattatttagtttggaCTGGGTTTTTCCTttcttcttccttcttttttGATCTAAAATGACTTATTGGGACTGTGTGTGAACTAACaaccaaaaaaatgaataaaactggGAAAAGGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000109271

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009716 False 1271 mRNA 0.40 11 46425800 46447830
TCONS_00009717 True 1271 mRNA 0.40 11 46443477 46447830

Neighbor

gene id symbol gene type direction distance location
XLOC_004965 BX005305.4 coding upstream 17164 46404307 ~ 46408636 (+)
XLOC_004964 BX005305.3 coding upstream 34536 46386983 ~ 46391264 (+)
XLOC_004963 NA coding upstream 193929 46188296 ~ 46231871 (+)
XLOC_004960 NA coding upstream 281694 45883789 ~ 46144106 (+)
XLOC_004967 BX005305.2 coding downstream 14260 46462090 ~ 46466474 (+)
XLOC_004968 BX005305.5 coding downstream 35788 46483618 ~ 46488071 (+)
XLOC_004969 CU855711.1 coding downstream 65051 46512881 ~ 46540171 (+)
XLOC_004970 NA coding downstream 94841 46542671 ~ 46543189 (+)
XLOC_004971 hid1b coding downstream 95742 46543572 ~ 46579932 (+)
XLOC_004962 NA non-coding upstream 323380 46078647 ~ 46102420 (+)
XLOC_004961 FO904966.2 non-coding upstream 362037 46046268 ~ 46063763 (+)
XLOC_004959 NA non-coding upstream 697259 45707191 ~ 45728541 (+)
XLOC_004973 CABZ01111725.1 non-coding downstream 155611 46603441 ~ 46603555 (+)
XLOC_004984 NA non-coding downstream 587891 47035721 ~ 47036420 (+)
XLOC_004991 NA non-coding downstream 1132192 47580022 ~ 47580566 (+)
XLOC_004992 NA non-coding downstream 1159041 47606871 ~ 47610330 (+)

Expression


Co-expression Network