LOC120548944 (npas3)


Basic Information

Item Value
gene id LOC120548944
gene name npas3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 32859559 ~ 32932010 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU281264
tgataAATAAGGGTCAGTGTGTGTCGAAGTACTACCGGTGGATCCAGAAGAACAGCGGTTACATCTGGATCCAGTCGAGCGCCACCATCGCCATCAACGCCAAGAACGCCAACGAGAAGAACGTCATCTGGGTCAACTACGTCCTCAGTAACCACGAGTATAAGGACACGCCCATGGACATCGCCCAGCTGCCCAACCTGCCGGAGAAAACCTCAGAGTCCTCCGAAACCTCAGACTCCGAGTCCGAGTCCAAAGAAAACTCCGATAATGAGAATGCCAAGTCCGAGGGGAAACCGGGCCACCAATCAGAACGCGAGGACCCGGAGACGGACAGCAAGCGTCAACAACAGCCCGGCCAACCACATTGCTCCTCCGAACAGGAAATGAAGCGACAGGAGGAAGGAGACAGCTCGAGTAACCCAGAGAGCCAGGACAGTGACGATAGTCTGGAGCCTTCGGATGCAGAGGGG
>XM_039785448.1
ATGTTTGTGCTGCCAGGTGTCACCTGTCCTGCAGCGCCCTACTACCCTGCAGTGCTCGGCTCGCGCCCTGCTAACGTGCCCCTACACCCTGCCCGCTCCTACTACGCCTGCAGTGCCCTGTTACgcccctgctacgtcctgctacaccctgctacgtcctacACACCTCCGCTgctcctgctacaccctgcaacgtcctgctacacccctGCAACGTCCTGCGGCCTCTACTACCCCTGCAGTGCTCCGCACtgcctgctactgataAATAAGGGTCAGTGTGTGTCGAAGTACTACCGGTGGATCCAGAAGAACAGCGGTTACATCTGGATCCAGTCGAGCGCCACCATCGCCATCAACGCCAAGAACGCCAACGAGAAGAACGTCATCTGGGTCAACTACGTCCTCAGTAACCACGAGTATAAGGACACGCCCATGGACATCGCCCAGCTGCCCAACCTGCCGGAGAAAACCTCAGAGTCCTCCGAAACCTCAGACTCCGAGTCCGAGTCCAAAGAAAACTCCGATAATGAGAATGCCAAGTCCGAGGGGAAACCGGGCCACCAATCAGAACGCGAGGACCCGGAGACGGACAGCAAGCGTCAACAACAGCCCGGCCAACCACATTGCTCCTCCGAACAGGAAATGAAGCGACAGGAGGAAGGAGACAGCTCGAGTAACCCAGAGAGCCAGGACAGTGACGATAGTCTGGAGCCTTCGGATGCAGAGGGGGAGGAacaggaggaggcaggaggaggaggaggaggaggaggaggaggaggaggaggaggaaggctgGGGAGGTTAGCAGGACTGGGAGGGTTGGGCGCTTTGGGCGCCATCGGAGGACTCGATAATCTGGGCGGGCTTCACATTAAAGTAGAGCACTATGGCGACGGAGAAGAGGTTCAGCTGCACAACTCGCAAAGTTCTTCatcggaggaggaggaggaagaggaggatgaccaggaggaggaggaggaggaggaagacgtAGGCGTGCAAGATTGTGACAGCGCCAACGCCGGAAGCAAGCTCCAGAAGAGGCGAAAGAGGAGGAAAGTGCAGAAATGGGACGGATCCCGAAGCAGGAGGATCCGTCTTTCCTCGACCTCGCCGAGCCCAGTCGCCATGGGAGACGCCGCGGCGCCGCTGGTCGACCCCTCCCAAGCCGCTCCCGCGAACTCCTCCCACCTGCTCGCCACGGGCTCCTCCCCCCCGAACGGCGCAGCGGCCGCCACGTCCTCGGTGTTGAAAATCAAGACGGAGATGGCGGAGCCCATCAACTTTGACAACGACAGCAGCATCTGGAACTTCCCGCCCAACCGAGAGATCTCCCGAAACGAGTCGCCGTACAGCATGACCACGAAGCCCGGCGGCGCGCCGGGAGGCCACGAGAACTTCCCCTCACCACAGGGCGGCTCGCTCCAAGTGGCCATCCCCGACTCAGTCCTGACCCCGCCAGGAAccgagggaggaggaggaggaggaggaggaggaggtgcgaGGAAGCCTCCTCCTTACAACGGAAACTCAGCGCTTTCTTCCGCTTCCAACGGCGCCAGTTTGGCGCTTCCCTCCAGCGGCGCCTCGTCAGCAGACCCTCTGTCCCCTCCGCTGTCCGCCTCGCCGCGGGACAAACAACAAGGCACTCCCAcaacctcttcctcctcctcctcctcctcctcttcctcatcctcatcgacctcttcctcctcttcgctGCTGTACTCCGGCGATCTGGAGGCTCTGCAGCGTCTCCAGGCCGGTAACGTCGTGCTCCCGTTGGTGCACCGGGTCACGGGGACTCTGGCGTCCACCGGCACGACCTCTCCGCGGGTCTACACCACCGGGACCATCAGGTACGCGCCGGCAGACGTCACTCTGGCCATGGCGCAAGGCAACCTGCTCCCGAACGCCGCCATGAACTTCGTGGACAGCTCCGGGTTCGGCCTGGACCCCAAGACGCCGATGGAGATGCTGTACCACCACGTTCACCGGCTCAACATGTCGGCCGCGGCGGCCGCCGGTCCGTTCGTCGGGTCTCCGGCGGCCGGAGCGGGCGGGAACGGCGCCCTGGGAGGCCAGATGGCGAGCGCGGCCAACGTTTTCACCACGGCGGAGGGACTTTTTTCCACGCTACCGTTCCCGGTGTACAGCAACGGGATCCACGCCACGCAGACGACGCTGGAACGGAAGGAGGATTAACGCAAAGCGCTCAAGACCGCAttactgtgtttgtttttttttccggaACCAACGAACTGTGTCAGATTTAACTAAGACTTCAACTCGCTCGTGAAAATAAAAacgaaaaaagagaaataaaacaaagactattttatcttctttttaTCAACACagcactgtgtgttttttttttttttttcgagagGGGAGAAAGGACAGGAAAGGACGACATATGTACTCTAGCACTTTGAATCTGAGCAACTGAGCTTGTGTAATAGACATGAATGACCCTCAAACATgtccacgccccctttttaatctatcttttttcctctctctctcctcctcctcatcctcctcttctctgcctctctgtctctctctttctctctctctctctctctctttttgctcCTGTTTCTTGCGATCAGCAACAGTTTTTCTCTCGGATCAAAATGAACAAcaggacacaaaaaaaacaactattctTTAATGTGAAGaaatccattttttattttttttttggccta

Function

symbol description
npas3 Is expressed in brain; head; and heart.

NR:

description
PREDICTED: neuronal PAS domain-containing protein 3 isoform X2

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281264 False 470 TUCP 0.56 3 32862787 32885141
XM_039785448.1 True 2720 mRNA 0.58 6 32859559 32932010

Neighbor

gene id symbol gene type direction distance location
LOC120549825 afg3l2 coding downstream 168646 32687730 ~ 32690913 (-)
LOC120549706 NA coding downstream 1882601 30971115 ~ 30976958 (-)
LOC120549705 NA coding downstream 1891479 30961020 ~ 30968080 (-)
ankrd6a NA coding downstream 1899266 30944479 ~ 30960293 (-)
LOC120549749 LOC103370732,LOC104968329,LOC104928167 coding downstream 1920156 30931136 ~ 30939403 (-)
LOC120548945 NA coding upstream 29268 32961278 ~ 32964049 (-)
foxg1a foxg1,LOC106934576,LOC103147766,LOC102223528 coding upstream 371741 33303751 ~ 33305439 (-)
sptbn5 NA coding upstream 391597 33323607 ~ 33460847 (-)
LOC120549249 LOC103353941,LOC101078900 coding upstream 576598 33508608 ~ 33524752 (-)
coch coch,LOC102779905 coding upstream 662058 33594068 ~ 33623644 (-)
G207685 NA non-coding downstream 11647 32845885 ~ 32847912 (-)
G207687 NA non-coding downstream 38278 32758197 ~ 32821281 (-)
G207684 NA non-coding downstream 42166 32790869 ~ 32817393 (-)
G207698 NA non-coding downstream 56735 32749130 ~ 32802824 (-)
G207691 NA non-coding downstream 106302 32752839 ~ 32753257 (-)
G207728 NA non-coding upstream 26685 32958695 ~ 33038026 (-)
G207739 NA non-coding upstream 129969 33061979 ~ 33542901 (-)
G207740 NA non-coding upstream 132660 33064670 ~ 33080983 (-)
G207747 NA non-coding upstream 218271 33150281 ~ 33254663 (-)
G207749 NA non-coding upstream 240120 33172130 ~ 33172563 (-)
G207670 NA other downstream 167674 32609535 ~ 32691885 (-)
LOC120549602 klhl18,LOC102789664 other downstream 177657 32673953 ~ 32681902 (-)
G207327 arhgap5 other downstream 879799 31975818 ~ 31979760 (-)
G207202 NA other downstream 1676004 31183023 ~ 31183555 (-)
LOC120549387 NA other downstream 2156281 30681927 ~ 30703278 (-)
prkd1 prkd1,LOC107391660 other upstream 62348 32994358 ~ 33078319 (-)
G207741 NA other upstream 138251 33070261 ~ 33070727 (-)
G207742 NA other upstream 162175 33094185 ~ 33149293 (-)
G207802 NA other upstream 559563 33491573 ~ 33498532 (-)
ehd4 LOC107391916,LOC105938093,LOC106527300,LOC102223325,LOC103156172,LOC103382107,LOC101073507 other upstream 600477 33532487 ~ 33647324 (-)

Expression


Co-expression Network