prkd1 (prkd1,LOC107391660)


Basic Information

Item Value
gene id prkd1
gene name prkd1,LOC107391660
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 32994358 ~ 33078319 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU281288
AGAAGACAGAGGTTTGTGTCCCACGGCTCTCGTCTTGTTTCAGGTGAAGCTGTGTGACTTCGGCTTCGCTCGGATCATCGGCGAGAAGTCGTTCAGGCGTTCTGTGGTCGGCACGCCGGCGTACCTCGCTCCCGAGGTCCTGAGAAACAAAGGCTACAACCGCTCGCTGGACATGTGGTCGGTCGGGGTCATCATCTACGTCAGTCTCAGCGGGACGTTCCCTTTCAACGAAGACGAAGACATCAACGATCAGATCCAGAACGCTGCCTTCATGTACCCTCCTCATCCCTGGAAGAAGGTTTCTCAGGAAGCTATTGACCTGATTAGCAACCTGCTGCAGGTAAAGATGAGGAAGAGATACAGTGTCGACAAGACCCTCAGTCACCCCTGGTTACAGGACTACCAGATGTGGCTGGACCTGAGGAACCTGGAGTCCCGGATG
>XM_039785450.1
GATCGGTCTGAGCCGGGAGCCGGTGCTGCTGGACGCCGCGGACCTCAGCCTGAGCCAGGTCCGGGAGGTCGCGTGCTCCATCGTGGACCAGAAGATTCCCGAGTGTGTTTTCTACGGGATGTATGAGAAGATCATGCTGTTTCGTCATGACCAGACGTCGGAGAAcgtgctgcagctgctgcgctCGGCCTCTCAGATCCAGGAGGGCGACCTGGTGGAGGCCGTGCTGTCGGCTTCGGCCACAGTGGAGGACTTCCAGATCCGTCCACACTGTCTGTTCGTTCACTCCTACCGAGCTCCAGCCTTCTGCGACCACTGTGGGGAGATGCTATGGGGACTCGTTCGGCAGGGACTCAAATGTGAAGGCTGCGGTCTGAACTATCACAAGCGTTGTGCCTTTAAGATCCCCAATAACTGCAGCGGAGTGCGTAGGCGTCGCTCGTCCAACGTTTCCCTGACGGGGGGGCTGATAAACCTGGGGCGCCCCCTCTCTGCTGAGCCCTCACCGCCCCACTACACCGACGAGGCTTTACTGTCTCCAGTGAGTCCCAGCATGGAGCAGAAGAACCAATTAGATTACTTCCCGGGTCGAGAGCGGCGCTCCAGCTCCCAGTCATACGTCGGACGTCCCATCGAACTGGACAAGATCTTACTGTCGAAGGTTAAAGTTCCTCACACCTTCCTGATCCACTCGTACACCCGGCCCACCGTCTGCCAGCACTGCAAGAAGCTGCTGAAAGGCCTCTTCAGACAGGGCCTGCAGTGTAAAGATTGTAAATTTAACTGCCATAAACGATGTGCTCCTAAAGTGCCAAACAACTGTCTGGGAGAAGTTTCTAGAAATGGAGAGCTCCTGAGCCCGGGGGCGGAGTCAGACGTGGCCATGGTGGAGGGTTGCCTCGACGACCACGATGTCGACAGAGGTGGCGGCCTGTTGGACGACATGGACGACGCGCTGACATCAGGGGGGGGGCTCCTGCTGGAGGCGGGGCACAGTGACCCCGACATGCACAGTGACCCCGACCTGGACGAGTCCAACCGGGCCATCAgCCCGTCCACCAGTAACAACATCCCTCTGATGCGAGTCGTTCAGTCCGTCAAAAACACAAAGAGGAAGACCAGCAACGTGATGAAGGAGGGCTGGATGGTCCACTACACCAGCAAGGACACTCTGAGGAAGAGACATTACTGGCGGCTGGACAGCAAATGCATCACAATGTTTCAGAACGAAACAGGAAGTAAATACTTCAAGGAGATCCCTCTATCAGAGATGTTATCTCTGGAACCGGCTCAAGACTTTTCTCTTCTCGCTGACGGAGCCAACCTCCACTGCTTCGAGATCGCCACGGCCTCCCTGGTTTACTACGTCGGAGAGCAGCTCCAGAGATCTGAATCGTCTGGGaccggcagcagcagcaatcTGGTCAGCGGAGTCGGGCAGGATGTGGCCCGGATGTGGGAGATGGCCATTCAGCACGCTCTGATGCCGGCCGTCTCTACCGGGGTCTCCCACACCTCTCACCGCAGCGGACACAAGGAGATTTCCATCAGCATTTCTGTCTCTAACTGCCAGATCCAGGAGAATGTgGATATCAACTCCGTGTATCAGATCTTCCCGGACGAAGTTCTCGGCTCGGGACAGTTTGGCATCGTCTACGGAGGTAAACACCGGAAGTCTGGCCGAGACGTCGCAATCAAGATCATCGACAAACTTCGCTTCCCCACCAAACAGGAGAGTCAGCTACGCAACGAGGTGGCCAtcctgcagaGCTTGCACCACCCCGGCGTGGTCAACCTGGACTGCATGTTCGAGACGCCGGAGAGAGTGTTCGTCGTCATGGAGAAGCTGCACGGAGACATGCTGGAGATGGTCCTGTCCAGTGAGAAGGGACGACTGCCAGAGAGGATCACCAAGTTCATCgtcacacaggtaacacacacacacacaacacacacacacacacacagAGGTTTGTGTCCCACGGCTCTCGTCTTGTTTCAGGTGAAGCTGTGTGACTTCGGCTTCGCTCGGATCATCGGCGAGAAGTCGTTCAGGCGTTCTGTGGTCGGCACGCCGGCGTACCTCGCTCCCGAGGTCCTGAGAAACAAAGGCTACAACCGCTCGCTGGACATGTGGTCGGTCGGGGTCATCATCTACGTCAGTCTCAGCGGGACGTTCCCTTTCAACGAAGACGAAGACATCAACGATCAGATCCAGAACGCTGCCTTCATGTACCCTCCTCATCCCTGGAAGAAGGTTTCTCAGGAAGCTATTGACCTGATTAGCAACCTGCTGCAGGTAAAGATGAGGAAGAGATACAGTGTCGACAAGACCCTCAGTCACCCCTGGTTACAGGACTACCAGATGTGGCTGGACCTGAGGAACCTGGAGTCCCGGATGTGGCTACATCACGGCGCACCCCCCACCGGCTTGGCCTGTTGTGTGGTCCGATGA

Function

symbol description
prkd1 Predicted to enable ATP binding activity; calcium-dependent protein kinase C activity; and metal ion binding activity. Acts upstream of or within regulation of angiogenesis and regulation of lymphangiogenesis. Predicted to be located in cytoplasm and membrane. Orthologous to human PRKD1 (protein kinase D1).

NR:

description
serine/threonine-protein kinase D1 isoform X1

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

RNA

RNA id representative length rna type GC content exon number start site end site
TU281288 False 442 TUCP 0.55 4 32994412 33012240
XM_039785450.1 True 2455 mRNA 0.57 20 32994358 33078319

Neighbor

gene id symbol gene type direction distance location
LOC120548945 NA coding downstream 30309 32961278 ~ 32964049 (-)
LOC120549825 afg3l2 coding downstream 303445 32687730 ~ 32690913 (-)
LOC120549706 NA coding downstream 2017400 30971115 ~ 30976958 (-)
LOC120549705 NA coding downstream 2026278 30961020 ~ 30968080 (-)
ankrd6a NA coding downstream 2034065 30944479 ~ 30960293 (-)
foxg1a foxg1,LOC106934576,LOC103147766,LOC102223528 coding upstream 225432 33303751 ~ 33305439 (-)
sptbn5 NA coding upstream 245288 33323607 ~ 33460847 (-)
LOC120549249 LOC103353941,LOC101078900 coding upstream 430289 33508608 ~ 33524752 (-)
coch coch,LOC102779905 coding upstream 515749 33594068 ~ 33623644 (-)
LOC120549318 LOC104924818,LOC103353924,LOC102795936,LOC101485054 coding upstream 1162507 34240826 ~ 34256495 (-)
G207726 NA non-coding downstream 71706 32920745 ~ 32922652 (-)
G207685 NA non-coding downstream 146446 32845885 ~ 32847912 (-)
G207687 NA non-coding downstream 173077 32758197 ~ 32821281 (-)
G207684 NA non-coding downstream 176965 32790869 ~ 32817393 (-)
G207698 NA non-coding downstream 191534 32749130 ~ 32802824 (-)
G207747 NA non-coding upstream 71962 33150281 ~ 33254663 (-)
G207749 NA non-coding upstream 93811 33172130 ~ 33172563 (-)
G207750 NA non-coding upstream 99076 33177395 ~ 33177727 (-)
G207755 NA non-coding upstream 118115 33196434 ~ 33284747 (-)
G207756 NA non-coding upstream 129976 33208295 ~ 33254206 (-)
LOC120548944 npas3 other downstream 62348 32859559 ~ 32932010 (-)
G207670 NA other downstream 302473 32609535 ~ 32691885 (-)
LOC120549602 klhl18,LOC102789664 other downstream 312456 32673953 ~ 32681902 (-)
G207327 arhgap5 other downstream 1014598 31975818 ~ 31979760 (-)
G207202 NA other downstream 1810803 31183023 ~ 31183555 (-)
G207742 NA other upstream 15866 33094185 ~ 33149293 (-)
G207802 NA other upstream 413254 33491573 ~ 33498532 (-)
ehd4 LOC107391916,LOC105938093,LOC106527300,LOC102223325,LOC103156172,LOC103382107,LOC101073507 other upstream 454168 33532487 ~ 33647324 (-)
G207808 NA other upstream 455158 33533477 ~ 33611751 (-)
scfd1 scfd1,LOC105419774,LOC105419155,LOC107719485 other upstream 554660 33632979 ~ 33702742 (-)

Expression


Co-expression Network