LOC120549320


Basic Information

Item Value
gene id LOC120549320
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 34281518 ~ 34364124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU281946
GTAGAATCCTGAAAATGGATTTATACCAAGAAGGCTGTGCATATTATGCGACCAACCTTAATGATGATTGACATTTTTATTGTCGGGgccctgtgattggctgactgGCCGGGGTGAAGCTGGGGGTGATAGCCGACATCCAGCCATCGACATGTGATCAAGACGCCCAAGGTGAATCCAAGTTTCACGCTTCGCAGGACCGCACACTTGATGACAGCTCCAGTATCTCCGTCAGACCACTGCAACAGCGGCGCCCCTCCCTCCACACACGGTCTTAGACtgacatctggtgTCAGACCACTGCAACAGCAGCGCCCCTCCCTCCACACACGGTCTTACACtgacatctggtgATGGGGTCTGCAAAATGAAGACACTGCCAGGGAGTCGTACCTGAAGGCCATGCAAGATTTCCACGTGAACTTCAGCATTACAGCATCAGGGCTATTTATCAACCCGGACCTACCATGGCTACGAGCATCGCCAGATGTTGTGGTGACCTGTGATTGATTGGTGTGCTTGATATAAAATGTCCTTTTAATGCAAATGGCCGTGCTCTCAAGGAATGTGTCAGCGACCCACATTTCTGCTTTACTGTGACTGCGGAAGGTATGACCCTCAAGTAAGATCATAGTTACATGTACCAACTGCTGGCCCAAATGCGTGTAGCTGAGGTAATGTACATGGATTTCGTTGTATGGACACCAAAAGAAGTTTTTATGCAATGAGTCCAATTTGATCAATACTTTTTTGATGAGGCCTACACTAGGGTGGAAGAATTCATTAGAACAGGGGTATTGCCGGAGCTGTTGGGTAAATGGTTTACTGTGCCACACCTCTCCTCAAGTGCTAACCTTGAGAAGGAACCTGAGGGATGttactgggggaaaccctgttgATGACACAGACATCCTCTCTCGCACATCCGAGCAATGCAAACGAAAGCGCTTCCACAAGTCATGTCTGAAGCTGAGCAGGGTGCCAAAGATTTGGAAGTGTTTAGAAtgcaaaaagcaaacaaacaagaaaTGAAGTTGGCAAGGCAAGgtagctttatttgtatagccaacatggcatcatgactttgcgtaaatatatacgccactttcataaagccaaatggcgtgttattttacgcaattttcagctatccacgtgtatgatacacgctggatacagctgatgtaaacagacccaccacgtggcctcgccacgttgcgcgttatcgcgagaacgcaacgtactatcgcgagaacgcgacgtactatcgcgagaacaacgtcacacgcctgttaagacaaaaaaaatggttgagtttaggaaaagaacacagggaaaggctttagtaacaaaacagtgacaaaaacacggaaaataacaactaaaacacgcttacgacaacaacaaatggttgggtttaggaaagaaacattgggtaaggcttattaaaaacaaaaaatgaaaaacaaaaaacggccgaaaaatcgccgcacgcggggcgcgaacccagctctcccaggtgaaagtcctgtgttttacctttTGTTGCTTTCCCCTCcaatgtttgtcattttttttctgcgccttttgaatgtttttttggatttaatttaaagaaagtagtgggctgatcatttatttaacttgtgcaGAGCATTGTATGGAACAATCCACATTAGTTTCCTGaacatttggttgaaagaaacccacttTTCCGTGTGAAATTTGACAAGAGGACAACAAAGAAAGGCAgccagccttgatttaaaagaacagagttgcagca
>XR_005637371.1
ATTATGCGACCAACCTTAATGATGATTGACATTTTTATTGTCGGGgccctgtgattggctgactgGCCGGGGTGAAGCTGGGGGTGATAGCCGACATCCAGCCATCGACATGTGATCAAGACGCCCAAGGTGAATCCAAGTTTCACGCTTCGCAGGACCGCACACTTGATGACAGCTCCAGTATCTCCGTCAGACCACTGCAACAGCGGCGCCCCTCCCTCCACACACGGTCTTAGACtgacatctggtgTCAGACCACTGCAACAGCAGCGCCCCTCCCTCCACACACGGTCTTACACtgacatctggtggcaGGATGATActggagctgctgctgtttgctgctCTGCTAGTCGGAGGTTATTTTCTTCTCCACATGACTTTTCTCAAGCTGCCACGATGTAAAAGTGCTGCAAAGTTACACGGGAAAATCGTCATCGTCACCGGAGCAAACACCGGCATCGGTAAGACCACGGAGATGGATTTGGCCAGGAGGGGGGCGAGGGTGATCCTGGCCTGCAGGGACAGACGGCGAGCCGAGGCCGCCGCTCAGGAAATCATCCAGGTGTACTTGTGAAAACTGTGAACACATGCCCCAGGAGAGAGAAAATATATGTTGCTGGGAAATACCACAGGTCATGAGAATAATGACCCAGGTTCCTGAGGAGATAACCTGTATGCATGACCATCCTGACCTTCATCCAGTGTGCCTCAATATATATTCTTTGCAAAATGCaatgaatattaatatttacagaGTTGACCATGGCCGGTTGAGAATCCGAGGGTTGGAAAGATGGGGTCTGCAAAATGAAGACACTGCCAGGGAGTCGTACCTGAAGGCCATGCAAGATTTCCACGTGAACTTCAGCATTACAGCATCAGGGCTATTTATCAACCCGGACCTACCATGGCTACGAGCATCGCCAGATGTTGTGGTGACCTGTGATTGATTGGTGTGCTTGATATAAAATGTCCTTTTAATGCAAATGGCCGTGCTCTCAAGGAATGTGTCAGCGACCCACATTTCTGCTTTACTGTGACTGCGGAAGGTATGACCCTCAAGTAAGATCATAGTTACATGTACCAACTGCTGGCCCAAATGCGTGTAGCTGAGGTAATGTACATGGATTTCGTTGTATGGACACCAAAAGAAGTTTTTATGCAATGAGTCCAATTTGATCAATACTTTTTTGATGAGGCCTACACTAGGGTGGAAGAATTCATTAGAACAGGGGTATTGCCGGAGCTGTTGGGTAAATGGTTTACTGTGCCACACCTCTCCTCAAGTGCTAACCTTGAGAAGGAACCTGAGGGATGttactgggggaaaccctgttgATGACACAGACATCCTCTCTCGCACATCCGAGCAATGCAAACGAAAGCGCTTCCACAAGTCATGTCTGAAGCTGAGCAGGGTGCCAAAGATTTGGAAGTGTTTAGAAtgcaaaaagcaaacaaacaagaaaTGAAGTTGGCAAGGCAAGgtagctttatttgtatagccaacatggcatcatgactttgcgtaaatatatacgccactttcataaagccaaatggcgtgttattttacgcaa
>XR_005637372.1
ATTATGCGACCAACCTTAATGATGATTGACATTTTTATTGTCGGGgccctgtgattggctgactgGCCGGGGTGAAGCTGGGGGTGATAGCCGACATCCAGCCATCGACATGTGATCAAGACGCCCAAGGTGAATCCAAGTTTCACGCTTCGCAGGACCGCACACTTGATGACAGCTCCAGTATCTCCGGTAAAACGACGAATGATCAGACCACTGCAACAGCGGCGCCCCTCCCTCCACACACGGTCTTAGACtgacatctggtgTCAGACCACTGCAACAGCAGCGCCCCTCCCTCCACACACGGTCTTACACtgacatctggtggcaGGATGATActggagctgctgctgtttgctgctCTGCTAGTCGGAGGTTATTTTCTTCTCCACATGACTTTTCTCAAGCTGCCACGATGTAAAAGTGCTGCAAAGTTACACGGGAAAATCGTCATCGTCACCGGAGCAAACACCGGCATCGGTAAGACCACGGAGATGGATTTGGCCAGGAGGGGGGCGAGGGTGATCCTGGCCTGCAGGGACAGACGGCGAGCCGAGGCCGCCGCTCAGGAAATCATCCAGGTGTACTTGTGAAAACTGTGAACACATGCCCCAGGAGAGAGAAAATATATGTTGCTGGGAAATACCACAGGTCATGAGAATAATGACCCAGGTTCCTGAGGAGATAACCTGTATGCATGACCATCCTGACCTTCATCCAGTGTGCCTCAATATATATTCTTTGCAAAATGCaatgaatattaatatttacagaGTTGACCATGGCCGGTTGAGAATCCGAGGGTTGGAAAGATGGGGTCTGCAAAATGAAGACACTGCCAGGGAGTCGTACCTGAAGGCCATGCAAGATTTCCACGTGAACTTCAGCATTACAGCATCAGGGCTATTTATCAACCCGGACCTACCATGGCTACGAGCATCGCCAGATGTTGTGGTGACCTGTGATTGATTGGTGTGCTTGATATAAAATGTCCTTTTAATGCAAATGGCCGTGCTCTCAAGGAATGTGTCAGCGACCCACATTTCTGCTTTACTGTGACTGCGGAAGGTATGACCCTCAAGTAAGATCATAGTTACATGTACCAACTGCTGGCCCAAATGCGTGTAGCTGAGGTAATGTACATGGATTTCGTTGTATGGACACCAAAAGAAGTTTTTATGCAATGAGTCCAATTTGATCAATACTTTTTTGATGAGGCCTACACTAGGGTGGAAGAATTCATTAGAACAGGGGTATTGCCGGAGCTGTTGGGTAAATGGTTTACTGTGCCACACCTCTCCTCAAGTGCTAACCTTGAGAAGGAACCTGAGGGATGttactgggggaaaccctgttgATGACACAGACATCCTCTCTCGCACATCCGAGCAATGCAAACGAAAGCGCTTCCACAAGTCATGTCTGAAGCTGAGCAGGGTGCCAAAGATTTGGAAGTGTTTAGAAtgcaaaaagcaaacaaacaagaaaTGAAGTTGGCAAGGCAAGgtagctttatttgtatagccaacatggcatcatgactttgcgtaaatatatacgccactttcataaagccaaatggcgtgttattttacgcaa
>XR_005637373.1
ACCAACCTTAATGATGATTGACATTTTTATTGTCGGGgccctgtgattggctgactgGCCGGGGTGAAGCTGGGGGTGATAGCCGACATCCAGCCATCGACATGTGATCAAGACGCCCAAGGTGAATCCAAGTTTCACGCTTCGCAGGACCGCACACTTGATGACAGCTCCAGTATCTCCGTCAGACCACTGCAACAGCGGCGCCCCTCCCTCCACACACGGTCTTAGACtgacatctggtgTCAGACCACTGCAACAGCAGCGCCCCTCCCTCCACACACGGTCTTACACtgacatctggtggcaGGATGATActggagctgctgctgtttgctgctCTGCTAGTCGGAGGTTATTTTCTTCTCCACATGACTTTTCTCAAGCTGCCACGATGTAAAAGTGCTGCAAAGTTACACGGGAAAATCGTCATCGTCACCGGAGCAAACACCGGCATCGGTAAGACCACGGAGATGGATTTGGCCAGGAGGGGGGCGAGGGTGATCCTGGCCTGCAGGGACAGACGGCGAGCCGAGGCCGCCGCTCAGGAAATCATCCAGATGGGGTCTGCAAAATGAAGACACTGCCAGGGAGTCGTACCTGAAGGCCATGCAAGATTTCCACGTGAACTTCAGCATTACAGCATCAGGGCTATTTATCAACCCGGACCTACCATGGCTACGAGCATCGCCAGATGTTGTGGTGACCTGTGATTGATTGGTGTGCTTGATATAAAATGTCCTTTTAATGCAAATGGCCGTGCTCTCAAGGAATGTGTCAGCGACCCACATTTCTGCTTTACTGTGACTGCGGAAGGTATGACCCTCAAGTAAGATCATAGTTACATGTACCAACTGCTGGCCCAAATGCGTGTAGCTGAGGTAATGTACATGGATTTCGTTGTATGGACACCAAAAGAAGTTTTTATGCAATGAGTCCAATTTGATCAATACTTTTTTGATGAGGCCTACACTAGGGTGGAAGAATTCATTAGAACAGGGGTATTGCCGGAGCTGTTGGGTAAATGGTTTACTGTGCCACACCTCTCCTCAAGTGCTAACCTTGAGAAGGAACCTGAGGGATGttactgggggaaaccctgttgATGACACAGACATCCTCTCTCGCACATCCGAGCAATGCAAACGAAAGCGCTTCCACAAGTCATGTCTGAAGCTGAGCAGGGTGCCAAAGATTTGGAAGTGTTTAGAAtgcaaaaagcaaacaaacaagaaaTGAAGTTGGCAAGGCAAGgtagctttatttgtatagccaacatggcatcatgactttgcgtaaatatatacgccactttcataaagccaaatggcgtgttattttacgcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU281946 True 1786 lncRNA 0.45 5 34281518 34364124
XR_005637371.1 False 1583 lncRNA 0.48 8 34282164 34363672
XR_005637372.1 False 1599 lncRNA 0.48 8 34282164 34363672
XR_005637373.1 False 1344 lncRNA 0.49 6 34282164 34363664

Neighbor

gene id symbol gene type direction distance location
LOC120549317 LOC103353926 coding downstream 7725 34262207 ~ 34273793 (-)
LOC120549318 LOC104924818,LOC103353924,LOC102795936,LOC101485054 coding downstream 25023 34240826 ~ 34256495 (-)
coch coch,LOC102779905 coding downstream 657874 33594068 ~ 33623644 (-)
LOC120549249 LOC103353941,LOC101078900 coding downstream 756766 33508608 ~ 33524752 (-)
sptbn5 NA coding downstream 820671 33323607 ~ 33460847 (-)
LOC120549319 NA coding upstream 5726 34369850 ~ 34370808 (-)
LOC120549830 NA coding upstream 27741 34391865 ~ 34392773 (-)
LOC120549861 NA coding upstream 340577 34704701 ~ 34712707 (-)
LOC120548959 NA coding upstream 359827 34723951 ~ 34759573 (-)
LOC120548962 NA coding upstream 520897 34885021 ~ 34890823 (-)
G208142 NA non-coding downstream 3867 34277415 ~ 34277651 (-)
G208140 NA non-coding downstream 27184 34253305 ~ 34254334 (-)
G208122 NA non-coding downstream 79770 34196225 ~ 34201748 (-)
G207873 NA non-coding downstream 151877 34119189 ~ 34129641 (-)
G207876 NA non-coding downstream 174572 34106293 ~ 34106946 (-)
G208150 NA non-coding upstream 24210 34388334 ~ 34521883 (-)
G208184 NA non-coding upstream 147139 34511263 ~ 34535834 (-)
G208178 NA non-coding upstream 164300 34528424 ~ 34687034 (-)
G208197 NA non-coding upstream 165809 34529933 ~ 34546133 (-)
G208180 NA non-coding upstream 171931 34536055 ~ 34611604 (-)
G207861 NA other downstream 172524 33973787 ~ 34108994 (-)
LOC120548953 NA other downstream 175401 33937398 ~ 34106117 (-)
hikeshi hikeshi,LOC102778092 other downstream 188145 34041943 ~ 34093373 (-)
LOC120549293 NA other downstream 357025 33920846 ~ 33924493 (-)
hectd1 hectd1,LOC102302438 other downstream 377495 33831187 ~ 33904023 (-)
haus2 NA other upstream 90898 34455022 ~ 34462293 (-)
mapkbp1 NA other upstream 248643 34612767 ~ 34702703 (-)
G208221 NA other upstream 438819 34802943 ~ 34887617 (-)
LOC120548961 heatr5a other upstream 481813 34845937 ~ 34883690 (-)
G208252 NA other upstream 654390 35018514 ~ 35041631 (-)

Expression


Co-expression Network