LOC120548961 (heatr5a)


Basic Information

Item Value
gene id LOC120548961
gene name heatr5a
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 34845937 ~ 34883690 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU282069
gtgtctgtctctgtatttgtgtgtgtgtgtgtttcatttgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtatatgtatatgtgtgtctgtgtgtgtctgtatttgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtatatgtatatgtgtgtgtgtgtgtgtctgtatttgtgtgtgtgtgtgtgtcgtgtgtgtgtgtgttgtgtgtatgtgtgtgtgtgtgttgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtagttgtgtgtgtgtgtgtgtctgtgtgtctgtatttgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtatttgtgtgtgtgtgtgtgtctgtgtgtagcttAATTAAAATCAGAAATCTAAATCAGAAATGGACTCTGGACTTTGTGAATCAGGATCAGAAAGGGTTGGGGTCAGTCAGCCCGAGGCTCCAGCACGATGAAAAGCGATTGGTTCCTGTGGATAATGTGCCTGGATCCCCCCccgctgacctctgacctctgacccctgacCCCGGACCAGAGTCGGAGCGCTCCAGACCCGCTCCACAGCTTCCTGTCGGCTTGGATCAGCGCTGGCCGGTGTACGCTCGGAACCAGGAAGTGACGGACGCAGCCGCAGACGAGATCATCCCTCCGGCGTTAGCAGAGGGCTGGGACACCTGCAATGCACTCTGGGAAAGATCCATGGactggaagaagaggaagagagggagagagttaaacccaccagactccatgtaaataatcagtaatttaagcatcaacaaacacacttcattcaaagtggacagaaactaaataaaactatgaaaagctgttttgggttgtctttccactttaaccaaccatcacaactctagttttggttgaaataaacacatagtttactgatttacatgtgagaatatgctggctctatacacgctaaaagtattgtttttttaaatggagtctggtggggttAGCGCTAGCATCTTCAGAGCCGTTTCTGGTTAAagagaaaggtctcaaagaggttttaaatgtctatctctgtagggatccatcccataatgttgtcagacacttagaataataataatccgagtctgtcagcagcaaaaatattttgtgaaggtaaatacaagctgaacggttgtcctattaacttacagtgtagcttgtttctctcttaatactgaaccaatgtcaaagatagttgttcccatcagtcacttagacacagaccCATAGGGTCCAGGGTGAAA
>XM_039785463.1
ATGAGGCAGCAGTTTTCCCGTCTCCACGGAGATGCTGAGTCGGAGCGCTCCAGACCCGCTCCACAGCTTCCTGTCGGCTTGGATCAGCGCTGGCCGGTGTACGCTCGGAACCAGGAAGTGACGGACGCAGCCGCAGACGAGATCATCCCTCCGGCGTTAGCAGAGGGCTGGGACACCTGCAATGCCTGCGTGGTCTTCGTGTCCACCCTGGGCGGCTCCTGGTTGGAGGGGAACTTCCCGGCCTTCCTGTCCCTGCTGATGGAGCTGGCGTCCCACGGCCGGGCCACGCAGACGCCTGGCGACGCCGCGGTGACCCGTCGCTGCGTCTCCTTCATCCTGAGGAGCACCCTGGGGTCTCTGCTGGGGGAGAAGGCTCAGACCAACGCCGCCAAGCAGCTCTGCCTCGCCGTGGCGGCACAGAAACCGGCCATCGatgcAGCTCTGACCGATGGGAACGTTGAGACCAGAGTCTCGGCTGCAGACGTCGCAGCCAGTCAGCACATGTTGGTCTGCTGCCTGCTGGAACTGGGAGGACTCATACAGGGACTGGGAACCACTGCCGCCCCCCTCCTCACTGACAGCAGCacagCCCTCGTGGACACGGTGATCTCCGTCCTCCTCCACCCTGCCGCCTCCGCCCGTCTGGCTGCCGCCTGGTGCCTGCGCTGCGTTGCCACGGCGATGCCGTCCCAGTGTTCGCCGCTGCTGGATCGCTGTGCCGAGCGGCTGGTGGCGCTGAAGTCTTCCCCCGAAGCCGTTGCCGGGTACGGAGCCGCTGTGGCCGCCCTGGTGGCCGCCGTGCAGCACTGCCCTCTGGGAATACCACACACCAAAGGCATGgtggtgCTGTCCCTGGCTGAAGACCTGCTGCGTTCAGCCTCTCAGAACAGTCGCATCTCTCTGCAGAGGACTCAGGCCGGCTGGCTGCTCGTCTCCTCTCTCATCACGCTGGGCCCGGCAGTAGTGGAGCACCACCTGGCccgtctcctcctcctgtggCGGTGTGTGTTTCCTGCCTCCCTCAGGGAGCAGGAGATGGAGCTGCGGCGAGGGGACTACTTTACGTGGCAGGTTACGCTGGAGGGACGTGCCGGAGCGCTCTGTGCGATGAAGAACCTGCTGCTGCACTGCAGGGAGCTGGTCACCGATGACATCATCAGCCGTCTGCTCACGCCATTGGCCTGCGCTGTGGCGCTGCTCACCAGgttacCTGCTCTCCTCAGGTCTTACAGCAGTTCAGTCCGCAGCTCGTCAGTCGTCTACAGACTCCGAGTCTACGAGCTGCTCGCTCTGCTGCCTCCTCACACCTACCAAGaGAGTTTTGGTGTGATGATGAACCAGCTGGTGTCTGACCTGTCCGGTCCCGACAACCTGAACCAGCCGTGTTCGGAGCTCACGCTGCTGCCCCCCCTCTGTCACCATGACGACCTGCAGCTGGTCGGCCCCGCCCTCCACCACACCGACCACCGGTACATCCAGGAACAGctCCATGGCAGCAGTGTGGGAGGAGGCTCTCTGGACAACGATGCCTTCAGTCTGTGTGAGAAGAGTGATGAAGctcctgctcctcttcctcctccggTGGCTCTGACCGCCGCCGCCGTTCGCCTCTTCGGGGTGCTTCACCCCCACGTCATCTCCGCTCAGAGgGTGAAGATCTTGGAGCAGTTTGTGGAAACGGTGAACCAGCTGAAGGGTCAACGGCAGCAGACGGTCCAGACGCACGTCTGCGCCGCCCTCTGCAGTCTGCTCAAGCACCAGGCCGGTGTTCGGGGCTCCCTGGGCCCGGAGGAGGTGCGTTCCCCGGCGCTGTCCCTCCTGTCGGGGGCGCTGGAGAGCGCCGGGCCTCTGCTGCGCTGCCTGGCGGCTGAAGGTCTGGCGCGGCTGGTCCAGCTGGTCGCTGACCCCGGCTTCACCGTCTCCGTCTCCCTGCTCTGCTTCGACAGGTTGAAGTCGGCTCGGGACGCGGCGTCTCGCAGCGGCTACGCTCTGGCTCTGGGGGCGCTGCAGCGCTACACCGGAGGAATCAGCTCGCCACAACACCTGTCCACCTGCCTGGGAGTCCTGTTCACCCTCAGCCAGGACAGCACCTCGCCAGAGGtccagGCCTGGTCTCTCCACAGCCTGTCTCTGGCGGTGGACCTGTCCGGTGGTTTGTACCGCGCCCACGCCGAGCCGTCCTTCACCCTGGTGCTGCGGCTGCTGCTGTCggccccccccacccaccctgAGGTGCACCTGAGCCTGGCCCGCTGCCTGCACGCCCTCATCACCTGCCTGGGCCCCGACCTGCAAGgTGAAGGAGCAGCAGTGTCCTCTCTGCGCTCCAGCTGTCTGGTGGGATGTGGAGTGATGCAGGACGGTCCCGATGCTCTGGTTCAGGCCAGAGCCATTTCCTGTCTGCAGCAGCTGCACATGTTCTCGCCTCCGCACGTCAACCTGGCCAAACTCGTCCCTGCTCTCTGTGAGATCTTGTTGGATTATTCCCTGTTGgcccACCTGTGCAGCTCCTACCTGTGTCTGCGCCGGGCCGTGGTGGCCTGTCTGCGTCAGCTGGTCCAGCGGGAGgcgctggaggtctctcagcaCGCCATCACGCTGGTCAAAGAGCTGCCCAGACGAGACAACACACAGCTGGgtGCCTGCTGA

Function

symbol description
heatr5a Predicted to be involved in endocytosis; protein localization; and retrograde transport, endosome to Golgi. Predicted to be active in endocytic vesicle. Orthologous to human HEATR5A (HEAT repeat containing 5A).

NR:

description
PREDICTED: HEAT repeat-containing protein 5A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282069 False 1345 lncRNA 0.45 2 34881856 34883247
XM_039785463.1 True 2649 mRNA 0.65 19 34845937 34883690

Neighbor

gene id symbol gene type direction distance location
LOC120548959 NA coding downstream 86364 34723951 ~ 34759573 (-)
LOC120549861 NA coding downstream 133230 34704701 ~ 34712707 (-)
LOC120549830 NA coding downstream 453164 34391865 ~ 34392773 (-)
LOC120549319 NA coding downstream 475129 34369850 ~ 34370808 (-)
LOC120549317 LOC103353926 coding downstream 572144 34262207 ~ 34273793 (-)
LOC120548962 NA coding upstream 1331 34885021 ~ 34890823 (-)
jmjd7 jmjd7 coding upstream 192314 35076004 ~ 35084121 (-)
kiaa0586 NA coding upstream 210778 35094468 ~ 35142201 (-)
irf2bpl NA coding upstream 241524 35125214 ~ 35127556 (-)
LOC120549006 arid4a coding upstream 265974 35149664 ~ 35166022 (-)
G208246 NA non-coding downstream 7332 34837703 ~ 34838605 (-)
G208189 NA non-coding downstream 35470 34730360 ~ 34810467 (-)
G208179 NA non-coding downstream 115628 34657012 ~ 34730309 (-)
G208272 NA non-coding downstream 123347 34721557 ~ 34722590 (-)
G208185 NA non-coding downstream 127174 34718110 ~ 34718763 (-)
G208264 NA non-coding upstream 8066 34891756 ~ 34941297 (-)
G208269 NA non-coding upstream 8429 34892119 ~ 34968495 (-)
G208239 NA non-coding upstream 55670 34939360 ~ 34963868 (-)
G208290 NA non-coding upstream 56698 34940388 ~ 34988087 (-)
G208237 NA non-coding upstream 59839 34943529 ~ 34992114 (-)
mapkbp1 NA other downstream 143234 34612767 ~ 34702703 (-)
haus2 NA other downstream 383644 34455022 ~ 34462293 (-)
G207861 NA other downstream 736943 33973787 ~ 34108994 (-)
LOC120548953 NA other downstream 739820 33937398 ~ 34106117 (-)
G208252 NA other upstream 134824 35018514 ~ 35041631 (-)
LOC120549800 NA other upstream 323401 35207091 ~ 35281096 (-)
LOC120548685 LOC108250349 other upstream 401842 35285532 ~ 35303585 (-)
G208337 NA other upstream 420096 35303786 ~ 35331165 (-)
LOC120548642 NA other upstream 531710 35415400 ~ 35474404 (-)

Expression


Co-expression Network