foxg1a (foxg1,LOC106934576,LOC103147766,LOC102223528)


Basic Information

Item Value
gene id foxg1a
gene name foxg1,LOC106934576,LOC103147766,LOC102223528
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 33303751 ~ 33305439 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785015.1
ACTGAAAAGGTCCAACCAATGTTTTTTTACTTGCTTTAGTGGCTGTGGCTCCCTAATTAATTGCAGCTATCTGTCTCCTatcgatgtgtgtgtgtacatgtgtgttgtgtgtgtgtgtttcctcttttctccccAAACCGAACATGAAATAGTTTGTTGGGCTATAGTTTCTTTCTTCCTATCGTccccccttccttccttccttccttcccgtCCGGGCTCGCAGGCAGAGACAGGACAGATTGAAACCCAGCTGTGTGCGTTGCCATTTTCCCCCCTCTCTGCTCGGTGATGTTGGATATGGGAGAGCGCAAAGAGGTGAAAATGATTCCTAAATCGTCGTTCAGTATAAACAGTTTGGTGCCCGAGGCCGTGCAaagcgacaacaacaacaacagcaacagcagcagccaccagaaccaccaccaccaccaccaccagaaCCACCACATCCAGAGCCACATCCAGAACCACCGGGCCGTCGGCGCCGAGGAAGCCGAGCGCAAAGCTCCTCTCCCGGTCGCGCAGCAGCCGCAGAGTGAGGCCAAAGCGGATTCTAAAAGTGAGTCCGCGAGCCTGCAGGAGGAGAGCTGCGCGGACGAGAAAGACAAaccggaggagaagaaggacgGGAAAGACGGGGACGGAGGAAAGGACGGAGAGAAGAAGAGCGGCAAGTACGAAAAACCTCCTTTTAGCTACAACGCGCTGATCATGATGGCCATCCGGCAGAGCCCGGAGAAACGGCTCACACTCAACGGCATCTACGAGTTCATCATGAAAAACTTCCCGTACTACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGGCACAACCTCAGCTTGAATAAATGCTTCGTGAAGGTGCCCCGGCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGAGCAGCGACGACGTCTTCATCGGAGGCACCACCGGGAAGCTGCGGCGGCGCTCCACCACGTCCCGGGCCAAGCTGGCCTTCAAGCGGGGCGCGCGCCTCACCTCCGGGCTCACCTTCATGGACCGCGCCGGCTCCCTGTACTGGCCTATGTCGCCCTTCCTGTCGCTGCATCACCCGCGAGCCAGCGGCGCCCTGGGCTACAACGGGACCTCCTCCGGCTACCCGGCGCACCCCATGTCCTACAGCACCATGCTGACGCAGAACATGGGCAGCAACCACTCGTCGTTCCCGGGCTCCAACGGGCTGAGCATGGATCGGCTGGTCGGCGGGGATCTGCCCTACGCCACGCACCACCTGACGGCGGCGGCCCTGGCGGCCTCCGCGGTGCCCTGTGGCCTCTCCGTGCCGTGCTCCGGGGCCACTTACTCCCTGAACCCGTGCTCTGTGAACCTGCTGGCCGGGCAGACCAGTTACTTTTTCCCTCACGTCCCACACCCCTCCATGAGCACGCAGTCCGGCGGCGGATCCTTGCAGGCAGCCCGGGCTTCGGCCTCCAATTCCCCGCAGGCTCCGTCCTCGTCCTCGCTGCCCTGTGACTCTCTGAGGCCGGCTCTGTCCGGCTCTCTGCCGGCCTTCTCCTCGGGACTTTCCGGGGGTTTGTCTGACTATTTTACGCATCAAAACCAGGGCTCGACCTCCAACCCGCTTATACACTAACCTCACCCTCACCTATTCATTCATCCCTCCATCTATCCATGCTCCCCTTTA

Function

symbol description
foxg1 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription, DNA-templated. Predicted to be located in nucleoplasm. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
forkhead box protein G1-like

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785015.1 True 1689 mRNA 0.59 1 33303751 33305439

Neighbor

gene id symbol gene type direction distance location
LOC120548945 NA coding downstream 339702 32961278 ~ 32964049 (-)
LOC120549825 afg3l2 coding downstream 612838 32687730 ~ 32690913 (-)
LOC120549706 NA coding downstream 2326793 30971115 ~ 30976958 (-)
LOC120549705 NA coding downstream 2335671 30961020 ~ 30968080 (-)
ankrd6a NA coding downstream 2343458 30944479 ~ 30960293 (-)
sptbn5 NA coding upstream 18168 33323607 ~ 33460847 (-)
LOC120549249 LOC103353941,LOC101078900 coding upstream 203169 33508608 ~ 33524752 (-)
coch coch,LOC102779905 coding upstream 288629 33594068 ~ 33623644 (-)
LOC120549318 LOC104924818,LOC103353924,LOC102795936,LOC101485054 coding upstream 935387 34240826 ~ 34256495 (-)
LOC120549317 LOC103353926 coding upstream 956768 34262207 ~ 34273793 (-)
G207755 NA non-coding downstream 19004 33196434 ~ 33284747 (-)
G207747 NA non-coding downstream 49088 33150281 ~ 33254663 (-)
G207756 NA non-coding downstream 49545 33208295 ~ 33254206 (-)
G207750 NA non-coding downstream 126024 33177395 ~ 33177727 (-)
G207749 NA non-coding downstream 131188 33172130 ~ 33172563 (-)
G207766 NA non-coding upstream 8163 33313602 ~ 33314976 (-)
G207767 NA non-coding upstream 13513 33318952 ~ 33362302 (-)
G207768 NA non-coding upstream 15345 33320784 ~ 33323023 (-)
G207776 NA non-coding upstream 60958 33366397 ~ 33446959 (-)
G207778 NA non-coding upstream 61619 33367058 ~ 33375800 (-)
G207742 NA other downstream 154458 33094185 ~ 33149293 (-)
prkd1 prkd1,LOC107391660 other downstream 225432 32994358 ~ 33078319 (-)
G207741 NA other downstream 233024 33070261 ~ 33070727 (-)
LOC120548944 npas3 other downstream 371741 32859559 ~ 32932010 (-)
G207670 NA other downstream 611866 32609535 ~ 32691885 (-)
G207802 NA other upstream 186134 33491573 ~ 33498532 (-)
ehd4 LOC107391916,LOC105938093,LOC106527300,LOC102223325,LOC103156172,LOC103382107,LOC101073507 other upstream 227048 33532487 ~ 33647324 (-)
G207808 NA other upstream 228038 33533477 ~ 33611751 (-)
scfd1 scfd1,LOC105419774,LOC105419155,LOC107719485 other upstream 327540 33632979 ~ 33702742 (-)
g2e3 g2e3,LOC102781532 other upstream 404424 33709863 ~ 33731941 (-)

Expression


Co-expression Network