coch (coch,LOC102779905)


Basic Information

Item Value
gene id coch
gene name coch,LOC102779905
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 33594068 ~ 33623644 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785129.1
TCAGCAGCTTAGCGCCGGCTGTTTCCAGGGAGTAAAGTCTGAAAAGTTTTCCTGAGAGAGACGACTGCTGAACAAACGGTGCAGAGATGTCTCAGCTGTCTGTCCTGCTGCGGCTGACAGgCCTGTTCTTCATGATCTGCTCCACGTCTGGCTCAGAATCCAGCGTGCCTTACCCGGTGACCTGTGTGACCCGCGGAGCCGACCTGGGGGAGGACGGCGAGGTGGTTCTGTGTCCTCCAGACTGCACACAGAGGAGTGTGTCGGTGTTCGGGACCGGGATCTATGCCTCCGTCTCTTCTGTCTGTGGAGCGGCCATCCACGGGGGGGTTCTGGGTCCGTCCGGCGGCCCCGTCAGAGTTCAAAAGATGCAGGGACGACACAACTACATGGGCTCCTACTCCCACGGGATCCAATCACAGGCGCTGTCCCGCTGGAGCGCCTCCTTCAGCCTCATCAagcCTGTTAATGTCCCTCTGGAGTTGACCAGTGATACCAGTACCACAGCTCTGCCTGCAGCCGCACAACCAGcaaagAAACCCCTGAAGAAACCGTCAGTGAAGAAAGCTCTGACAGGTGGAAATAAAGACTGTCAGATGGATATCGCCATGGTGATcgacagcagcaacaacatcgGACAGCGGAGGTTCAACCTGCAGAAGAACTTTGTCGTCAAACTGGCCGCCATGTTGAGAGTCGGATCAACGGGACCGCATATAGGACTGATCCAGGCCAgTGATTCTCCGAGGACCGAGTTCTTACTGACTAACTACACTCAGCCTAAAGAGCTGCTGTTTGCCATCAAGGAGCTGGCCTACTTGGGCGGAGACACCAACACAGGTAAAGCCATCATGCACACAGCGGAGACCTTCTTCAGCCAGGAGAAAGGCGGGCGGCGAGGTCACCCGCGGGTGATGATGGTGCTGATTGACGGCTGGCCGTCTGACGACCTGGAGCAGGCGGCCATGTTGGCCAGAGAGTCAGGCATCAACGTCTTTCTGGTGTCTGTGGCCAAACCGGCGCCTGAGGAGCTCGCCATGGTGCGAGACAAGGACTTTGTGAAGAAGGCGGTGTGTAAGGACAACGGTTTCTTCAGTTATTTGATCCCCAGCTGGTTCAGCACCACCAAACATGTCAAACCTCTGGCTCAGAAGCTGTGCTCGCTGGACGCCCTGCTCTGCAGTAAAACCTGCTACAACTCTGTCAACATCGGGTTCCTCATCGACGGTTCTTCCAGCGTCGGAGAAGGAAACTTCCAGCTGGTCCTGGAGTTCCTGGCGGGAATCGCCAGAAGCTTTGACATCTCAGACATCGGCGCTCACATCGGTGCGGTGCAGTTCACCTATGATCAGAAGCTGGAGTTCGGCCTGTTTGAACACTCGAACAAAGAGGACTCCGTCAACGCCGTGAGAAGAATCTCCTACATGAGCGGAGGAACCGCTACCGGAGCCGCCATCACCTACACCACCCAAAACCTGTTCAGGCGGACGGGACCGGGCCGCAACTTCCTCATTGTGGTGACAGACGGCCAATCATACGATGACGTCAGAGGCCCGGCGATGGCTGCACAGAAACAAGGCATCACCATGTACTCGGTGGGCGTGGCCTGGGCACCTATGGACGACCTCAGAGCGATGTCATCGGAGCCGAAAGACAGCCACACCTTCTTCACCCGAGAGTTCACCGGCCTCGCCGAGTTCATCCCTGTGCTGGTCCGAGGCATCTGCCGAGACTTCACAGAGAacaactaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcaccacgtTTGTACTTCTATACTTGTGATGACAACCTTAAAGCTGCGGTAGGTGATTTATTTTTGCCGCCAttgggcaaaaatgtccataATAACcattcagcatattgtaattcaagtgttcTGAGAGAAATCTACATCCCCGCTTGGCTCTgttgttttcaggctttagaaaatctagttGAGGGGTTCTCCAATTTATTAGTTACTCAAAGGTTTTTTTATGCAATGTCTTTGGCTTTTAAGCAACATACATTCAAGTTGAGTTCTCTGTTTTCCCTGTCGACTTTTGAAGCTGAACCGGTAAAAATGTGTCCATCCGTACAGATCAGGGATCAGCTACAGTCTGCGTAAAAACCACTACTGTGTATTCAACAACACTGacccttaaagtgcccatattatgaaaaaaacactttttctggtgatttggggtgttcttttgtgtctctggtgcttc

Function

symbol description
coch Predicted to act upstream of or within defense response to bacterium and positive regulation of innate immune response. Predicted to be active in collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).

NR:

description
cochlin

GO: NA

KEGG:

id description
K23574 COCH; cochlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785129.1 True 2309 mRNA 0.53 15 33594068 33623644

Neighbor

gene id symbol gene type direction distance location
LOC120549249 LOC103353941,LOC101078900 coding downstream 69316 33508608 ~ 33524752 (-)
sptbn5 NA coding downstream 133221 33323607 ~ 33460847 (-)
foxg1a foxg1,LOC106934576,LOC103147766,LOC102223528 coding downstream 288629 33303751 ~ 33305439 (-)
LOC120548945 NA coding downstream 630019 32961278 ~ 32964049 (-)
LOC120549825 afg3l2 coding downstream 903155 32687730 ~ 32690913 (-)
LOC120549318 LOC104924818,LOC103353924,LOC102795936,LOC101485054 coding upstream 617182 34240826 ~ 34256495 (-)
LOC120549317 LOC103353926 coding upstream 638563 34262207 ~ 34273793 (-)
LOC120549319 NA coding upstream 746206 34369850 ~ 34370808 (-)
LOC120549830 NA coding upstream 768221 34391865 ~ 34392773 (-)
LOC120549861 NA coding upstream 1081057 34704701 ~ 34712707 (-)
G207809 NA non-coding downstream 22635 33549763 ~ 33571433 (-)
G207739 NA non-coding downstream 51167 33061979 ~ 33542901 (-)
G207794 NA non-coding downstream 105648 33478983 ~ 33488420 (-)
G207776 NA non-coding downstream 147109 33366397 ~ 33446959 (-)
G207788 NA non-coding downstream 158425 33435219 ~ 33435643 (-)
G207801 NA non-coding upstream 23057 33646701 ~ 33683064 (-)
G207817 NA non-coding upstream 61928 33685572 ~ 33686916 (-)
G207824 NA non-coding upstream 81336 33704980 ~ 33705588 (-)
G207826 NA non-coding upstream 83525 33707169 ~ 33709487 (-)
G207828 NA non-coding upstream 87348 33710992 ~ 33711616 (-)
G207802 NA other downstream 95536 33491573 ~ 33498532 (-)
G207742 NA other downstream 444775 33094185 ~ 33149293 (-)
prkd1 prkd1,LOC107391660 other downstream 515749 32994358 ~ 33078319 (-)
G207741 NA other downstream 523341 33070261 ~ 33070727 (-)
LOC120548944 npas3 other downstream 662058 32859559 ~ 32932010 (-)
scfd1 scfd1,LOC105419774,LOC105419155,LOC107719485 other upstream 9335 33632979 ~ 33702742 (-)
g2e3 g2e3,LOC102781532 other upstream 86219 33709863 ~ 33731941 (-)
strn3 strn3 other upstream 143292 33766936 ~ 33884726 (-)
G207842 NA other upstream 199990 33823634 ~ 33826433 (-)
hectd1 hectd1,LOC102302438 other upstream 207543 33831187 ~ 33904023 (-)

Expression


Co-expression Network