lrit3b (lrit3,LOC102193314,LOC102307793,LOC101466384,LOC105919025)


Basic Information

Item Value
gene id lrit3b
gene name lrit3,LOC102193314,LOC102307793,LOC101466384,LOC105919025
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 30750231 ~ 30760842 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785178.1
CAGTGTAATCCCAGCTAATCTGGGATTCCGTTTCACGCTGCACTGTGGACACAACCTCAGACTGGAGAGGACTGGGAATATGGAGAAACAAAGTGCCCGTCTAAGTATGCGGTTTCTCTGATGAAGGATGTATCTGCTGGTCCTCGTTCACATCCTGCAGTCCACTCTGTTGGCGGTCCAATCCTGTCCATCTTTATGCGCCTGCACATACGGGTACagtggaatagcagagatcagGTTGGTGCAGTGCAGCGACCCTGGCATCTCGGCTGTTCCCATCAACGTCCCAGCTGACACAGTCAAACTGCGTCTAGAGAAGACCTTGATCTCCAGGGTGCCCCGGGCAGCCTTCTACAACCTGTCCGAGCTGCGTTTTTTGTGGCTGACCTACAACTCCGTCACGTCCATCCACCCCAGCAGCTTTGTCAACCTGAAGGCCCTGCGAGAGTTGCGTCTGGATGGCAACCTCCTGACCTCCTTCCCCTGGGAGGGGCTCAGGGACATGCCCCGCCTCCAGACTCTGGGTCTCCATAACAACCGCCTGTCCAGCCTTCCTGCCCACGCTGCTCTCTTTCTTCCCAACATCACCTACCTCGACCTGTCCAGCAACAGgCTCACTATATTACCTGCTGAGCTGTTGGACCTTTGGTTTCCTCTCCCAGGACAACAGGAAAGACCAGAACAAAGAAGAGTTTTGGGTCTCCATGACAACCCCTGGCTGTGTGACTGCCAGATCTCCATGGTGATGTCCCTGTCCACGTCCCTGGCGAGTCCTGTGGTTCTCATGGACCAGCTGCTGGTATGCCGCAGGTCTCTGGGTCAGTCAGGGTTGCCGATGACCCAGGCTGAGCTGTCCCGCTGTATGAGGCCTTCGGTCCAGCCCGCAGCCACCAGAGTCATCTCTCCACTGGGCAGCAACGTAATCCTCCGCTGCGACGCCACCGGCTACCCAACACCAACCCTGACCTGGATCAAAACGTCAGCCAACACTGATTGTTGCCAACAAGACATCCTTGAGAACTCTTACCAGCTACCCAGGAATTTGGAAAGTTTTATGCAGGAATCTCCTCGAGTTGGAGTTCGCTGGTCGATAATCAGCCTGAATGGGTTATCATACAAGGACGCTGGTGAATATCGCTGCCAGGCACGGAACATGGCAGGAACATCTGAAGCCCCAATTAAACTGAAGGTGGTGGGAATCTCAAGACTATCCCCTCTGCCAAAAAAGAAGTCCAAAAAGCCTCGACCCAAATCATCAACGAAACACATGAAGCCAAACAAGACTCCAGCTCCCACTAACACCCCCCCAGTAAAGGATAATCAGATACACCAAAACATTCCACCACCTTCCATTAACAAGACCCAGACGGCTCCTAATCTTTCGCCCAAAGTGTTCCCCAAAGACAAGTACATTAAAAGGCGCAAAATGAACTTAACAAATGCAAAGGCCCCAACATCCATCAGGTCTACACCTGAGCCCCCAGGAAACTCTACAACTGCTCCATTGTCAGAAAAACTTGTATAAGATACGCTCAAGTTGGTCTGCATCAGTAACTTGGTTGATTTTAAAAAGGTTATTGGAAAGCAAATCAATCATAACTGTTTGGGAACCTCTAGTTTTAGTGTTCCAGGCTTTTTTGGGGTCATTCTGCACTGCAAAATAAAATTGTTGATAAGCTGTCCTGTAAATTGAACTTGTTTGTATGAATAAAATGTTTGACACAGGa
>XM_039785179.1
CAGTGTAATCCCAGCTAATCTGGGATTCCGTTTCACGCTGCACTGTGGACACAACCTCAGACTGGAGAGGACTGGGAATATGGAGAAACAAAGTGCCCGTCTAAGTATGCGGTTTCTCTGATGAAGGATGTATCTGCTGGTCCTCGTTCACATCCTGCAGTCCACTCTGTTGGCGGTCCAATCCTGTCCATCTTTATGCGCCTGCACATACGGGTTGGTGCAGTGCAGCGACCCTGGCATCTCGGCTGTTCCCATCAACGTCCCAGCTGACACAGTCAAACTGCGTCTAGAGAAGACCTTGATCTCCAGGGTGCCCCGGGCAGCCTTCTACAACCTGTCCGAGCTGCGTTTTTTGTGGCTGACCTACAACTCCGTCACGTCCATCCACCCCAGCAGCTTTGTCAACCTGAAGGCCCTGCGAGAGTTGCGTCTGGATGGCAACCTCCTGACCTCCTTCCCCTGGGAGGGGCTCAGGGACATGCCCCGCCTCCAGACTCTGGGTCTCCATAACAACCGCCTGTCCAGCCTTCCTGCCCACGCTGCTCTCTTTCTTCCCAACATCACCTACCTCGACCTGTCCAGCAACAGgCTCACTATATTACCTGCTGAGCTGTTGGACCTTTGGTTTCCTCTCCCAGGACAACAGGAAAGACCAGAACAAAGAAGAGTTTTGGGTCTCCATGACAACCCCTGGCTGTGTGACTGCCAGATCTCCATGGTGATGTCCCTGTCCACGTCCCTGGCGAGTCCTGTGGTTCTCATGGACCAGCTGCTGGTATGCCGCAGGTCTCTGGGTCAGTCAGGGTTGCCGATGACCCAGGCTGAGCTGTCCCGCTGTATGAGGCCTTCGGTCCAGCCCGCAGCCACCAGAGTCATCTCTCCACTGGGCAGCAACGTAATCCTCCGCTGCGACGCCACCGGCTACCCAACACCAACCCTGACCTGGATCAAAACGTCAGCCAACACTGATTGTTGCCAACAAGACATCCTTGAGAACTCTTACCAGCTACCCAGGAATTTGGAAAGTTTTATGCAGGAATCTCCTCGAGTTGGAGTTCGCTGGTCGATAATCAGCCTGAATGGGTTATCATACAAGGACGCTGGTGAATATCGCTGCCAGGCACGGAACATGGCAGGAACATCTGAAGCCCCAATTAAACTGAAGGTGGTGGGAATCTCAAGACTATCCCCTCTGCCAAAAAAGAAGTCCAAAAAGCCTCGACCCAAATCATCAACGAAACACATGAAGCCAAACAAGACTCCAGCTCCCACTAACACCCCCCCAGTAAAGGATAATCAGATACACCAAAACATTCCACCACCTTCCATTAACAAGACCCAGACGGCTCCTAATCTTTCGCCCAAAGTGTTCCCCAAAGACAAGTACATTAAAAGGCGCAAAATGAACTTAACAAATGCAAAGGCCCCAACATCCATCAGGTCTACACCTGAGCCCCCAGGAAACTCTACAACTGCTCCATTGTCAGAAAAACTTGTATAAGATACGCTCAAGTTGGTCTGCATCAGTAACTTGGTTGATTTTAAAAAGGTTATTGGAAAGCAAATCAATCATAACTGTTTGGGAACCTCTAGTTTTAGTGTTCCAGGCTTTTTTGGGGTCATTCTGCACTGCAAAATAAAATTGTTGATAAGCTGTCCTGTAAATTGAACTTGTTTGTATGAATAAAATGTTTGACACAGGa

Function

symbol description
lrit3 Involved in regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in dendrite; endoplasmic reticulum membrane; and perikaryon. Predicted to be integral component of membrane. Implicated in congenital stationary night blindness 1F.

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785178.1 True 1727 mRNA 0.51 6 30750231 30760842
XM_039785179.1 False 1703 mRNA 0.51 6 30750231 30760842

Neighbor

gene id symbol gene type direction distance location
LOC120549389 enpep coding downstream 6529 30714803 ~ 30743702 (-)
LOC120549895 gnpda2,LOC104934428 coding downstream 52985 30689978 ~ 30697246 (-)
gabrb1 gabrb1,LOC103364303,LOC108247011,LOC106600539,LOC106926079 coding downstream 178479 30500242 ~ 30571752 (-)
atp10d atp10d coding downstream 268467 30422939 ~ 30481764 (-)
dapp1 dapp1 coding downstream 328743 30396745 ~ 30421488 (-)
LOC120548738 jkamp coding upstream 16962 30777804 ~ 30787857 (-)
LOC120549749 LOC103370732,LOC104968329,LOC104928167 coding upstream 170294 30931136 ~ 30939403 (-)
ankrd6a NA coding upstream 183637 30944479 ~ 30960293 (-)
LOC120549705 NA coding upstream 200178 30961020 ~ 30968080 (-)
LOC120549706 NA coding upstream 210273 30971115 ~ 30976958 (-)
LOC120549477 NA non-coding downstream 251939 30496770 ~ 30498292 (-)
LOC120549085 NA non-coding downstream 262726 30484785 ~ 30487505 (-)
LOC120548652 NA non-coding downstream 404825 30332529 ~ 30345406 (-)
G206966 NA non-coding downstream 556521 30193173 ~ 30193710 (-)
G206958 NA non-coding downstream 651496 30097563 ~ 30098735 (-)
G207104 daam1,LOC103373422 non-coding upstream 71701 30832543 ~ 30833569 (-)
G207145 NA non-coding upstream 107802 30868644 ~ 30942703 (-)
G207175 NA non-coding upstream 273954 31034796 ~ 31035354 (-)
G207203 NA non-coding upstream 414470 31175312 ~ 31177564 (-)
G207204 NA non-coding upstream 426533 31187375 ~ 31187646 (-)
LOC120549387 NA other downstream 46953 30681927 ~ 30703278 (-)
G206919 ccdc88c other downstream 815665 29934262 ~ 29934566 (-)
LOC120549715 lrfn2,LOC103357516,LOC102785515 other downstream 2545783 28046205 ~ 28204448 (-)
LOC120549840 NA other downstream 2715479 28012039 ~ 28034752 (-)
G206198 fbxo33,LOC102800092 other downstream 3925167 26821688 ~ 26825064 (-)
G207202 NA other upstream 422181 31183023 ~ 31183555 (-)
G207327 arhgap5 other upstream 1214976 31975818 ~ 31979760 (-)
G207670 NA other upstream 1848693 32609535 ~ 32691885 (-)
LOC120549602 klhl18,LOC102789664 other upstream 1913111 32673953 ~ 32681902 (-)
LOC120548944 npas3 other upstream 2098717 32859559 ~ 32932010 (-)

Expression


Co-expression Network