pax1a (pax1,LOC103359018,LOC101466677,LOC102791619,LOC100700371)


Basic Information

Item Value
gene id pax1a
gene name pax1,LOC103359018,LOC101466677,LOC102791619,LOC100700371
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24127131 ~ 24131781 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785331.1
TTAATTCCAGCAGACGCCGGACTCTGCAGGATAACTCCAATTTGCTTTTATCGGATGAAGATCACTTTGGTGCCATTGTACCTTGCAGTCACTTGTTTCCAAAAAGAGAAAGGGGCGCGCTACACTCGGTGGAGATTTTAAGAGGTCTATCTTTCCTTTTCTGGGGCTCATTCCTCCCGTTCCCCTTCCTTCGCTGCCTTCGCTCGGACACATTCAGCCGTTTGAAGGGGCACCTATATTTCCCGGCATCTCGAAACATATAGGCAAATGGAGCAAAACTATGGAGAGGTGAACCAGTTAGGCGGCGTGTTCGTCAATGGGCGACCCCTGCCCAATGCCATACGGTTAAGAATAGTGGAGCTGGCTCAGCTCGGCATCAGACCCTGCGATATAAGCCGGCAACTCCGAGTCTCCCACGGCTGCGTGAGCAAGATTTTGGCGAGGTACAACGAGACGGGCTCCATCTTACCCGGTGCCATCGGTGGAAGCAAACCACGGGTCACGACGCCTAACGTGGTGAAAAATATCAGGGAATACAAACAAGGCGACCCCGGGATATTTGCCTGGGAGATCCGGGACAGGCTTTTGGCAGATGGAGTTTGTGACAAGTACAATGTGCCGTCGGTTAGCTCGATCAGCAGGATTTTACGCAACAAGATTGGAAATCTCTCCCAGCCCAACCAGTATGAGAGCAGTAAGCAAGCCTCCGCGCAGGTCGGGCTCTCCTACAACCACATATACCCATATTCCTACCCCAACACCATGTCGCCCACTGGCACTAAAATGGGCAGCCCTCCTGGAGTACCGATGACGGCTGGACATATGAGCATATCCAGGGGCTGGCCTTCTGCACACACCGTCAGCAACATCCTCGGTATACGAGCCTTCATGGATCCTGCAGCCATTGCTGGGGCAGAGGGATATCCACCAAAAATGGAGGACTGGAGTAGCGTCAACAGAGCAGCTTTCCCCGCTGCTCACACGGTCAACGGGATTGACAAGTCAGCCATAGACGCCGACATAAAATACGCTCAGCCCTCCTCGACACTGTCCAGTTATGTCTCGGCGTGTGCGTACTCTCCCACCAACCAGTACGGGGTGTACAGTGGAGCAGCAGGCGGATACGTGGCCCCGGGTCACCACCACTGGCAGCCGCAGAGCCCGACCCTGTCCCACCCAGGCGGCGGGATGAGCATGCATGCAGGGGAGATCCACTCGCCGATGAACTTCAAGCATCAGGCCCGAGAAGGAGACAGAAAACCGCCCACTCCCCTgagcaagcagcagcagcaacatgaAGACTTGAACAGTGTGCATGGACTCAGTCTCCCTACCTCATCATCATAACCGGGACTTACACCACCTTAATTACCAGACCCATTTAACTGAACTCTTTTCAACAACTCCAACAGTAAGTCTGAACAGTAACGGCTCGTTTCTCCGAGTGTTTGCAGCTTACAGTCAAACACAGGCCTATTCACATTCGTTATGAATACAGTATAGCTTTATCGGCCTTATGGCCATATGAATGTAAGTTTGCATGGATACATCGGTGTTTTCCCTCCCaattttttttgaaatacttCATGttgctatactgtatattctcgTATGGAGACtgcagttttaattttttttaaatacactttTGTCAGTCCACTCTGTCATTGatgtttaattataaaaaacCAAAGGGCTACTCTGTAATCCGccatatattatattatcataatttgtggCCATGATCTCGATTCTACAGTGACTCAACTATGTGAACAAAGAGGTAAATTgtctaaatgtaaaatatttgccaaagctttaattatatatttttataatttcattgtaaatatataaaaaaataaa

Function

symbol description
pax1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; positive regulation of transcription by RNA polymerase II; and somitogenesis. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in branchiootorenal syndrome.

NR:

description
paired box protein Pax-1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09382 PAX1_9; paired box protein 1/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785331.1 True 1866 mRNA 0.49 5 24127131 24131781

Neighbor

gene id symbol gene type direction distance location
LOC120549070 qpct,LOC100700099 coding downstream 161371 23957775 ~ 23965760 (-)
LOC120549247 cnksr3 coding downstream 171847 23920191 ~ 23955284 (-)
ipcef1 cnksr3 coding downstream 212821 23904803 ~ 23914310 (-)
LOC120549331 tiam2,scaf8 coding downstream 222483 23782980 ~ 23904648 (-)
LOC120549330 cldn20,LOC102228876 coding downstream 359282 23762334 ~ 23767849 (-)
kiz kiz coding upstream 105238 24237019 ~ 24262525 (-)
insm1b insm1,LOC103359023,LOC100710315 coding upstream 316659 24448440 ~ 24451277 (-)
gjb3 LOC104946721 coding upstream 351132 24482913 ~ 24485855 (-)
gjb10 LOC103359028,LOC104919306,LOC104946722,LOC101068359 coding upstream 357114 24488895 ~ 24491106 (-)
ppie ppie coding upstream 359844 24491625 ~ 24495581 (-)
G205493 NA non-coding downstream 553119 23536946 ~ 23574012 (-)
G205492 NA non-coding downstream 566939 23528223 ~ 23560192 (-)
G205494 LOC102076813 non-coding downstream 591568 23529490 ~ 23535563 (-)
G205489 NA non-coding downstream 602817 23518903 ~ 23524314 (-)
LOC120548729 NA non-coding downstream 860477 23255878 ~ 23266654 (-)
LOC120548836 NA non-coding upstream 55015 24186796 ~ 24197384 (-)
G205643 NA non-coding upstream 100861 24232642 ~ 24233109 (-)
LOC120549041 NA non-coding upstream 298193 24429974 ~ 24433833 (-)
G205701 NA non-coding upstream 312038 24443819 ~ 24446396 (-)
G205702 zbtb8a non-coding upstream 344154 24475935 ~ 24476893 (-)
LOC120548654 LOC106573685,LOC106610772 other downstream 416270 23707989 ~ 23710861 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other downstream 892333 23024161 ~ 23234798 (-)
LOC120549684 NA other downstream 1179321 22944937 ~ 22947810 (-)
G205380 NA other downstream 1189274 22910107 ~ 22937857 (-)
LOC120549283 khdrbs1 other downstream 1343659 22778005 ~ 22783472 (-)
runx3 runx3 other upstream 484137 24615918 ~ 24664770 (-)
rsrp1 NA other upstream 620372 24752153 ~ 24755421 (-)
fndc5a fndc5,LOC108237574 other upstream 711940 24843721 ~ 24877345 (-)
G205845 bsdc1 other upstream 821425 24953206 ~ 24957041 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other upstream 940574 25072355 ~ 25074124 (-)

Expression


Co-expression Network