LOC120548880


Basic Information

Item Value
gene id LOC120548880
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 3143326 ~ 3147322 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785394.1
ATGGATCCAGAAAATAAATTCAAGTTAAAGAAAATCCAAGAGTCTGAGGGCGATGTGGAGGCTCAGATCCACTCACTGATTCAGAGAGCTGAGTGCCGGCTGTGGAACATCAGGAAGAGACCAAACCATTCAACAACGTCGAAAGTTGCTTACTTCAAGAGGAAATATGCGGAGGAGGAGGATTTACACGGAGGCCTACGTGGATATTTTCAAAAACACCTGATACTGCAGGAGGACCGCAGCTGCATCCTGAAGCTGTCCCTGGAGAAGCTGAGGTTCCTGGAGGACCCCGAGGCCTACCTCCGGCGCTCCGTCCTCATCAACAACCTGCTGAGGAAGATCCACcatgaggaggaggagctggaggccgaagaggaggaggaggaggaggaggaagaagatgaggtagaagaagaggaagaagaagtagGAGAAGAAGAGGCGGTGATTGGCGAGAGGGGGCAGCGGAAGCTGTTGTACCCGGACAGGAAGAGGTTGAAGGTGCTGGTGATGGACTGCTGCTCACCGGCGTTTGgcctggaggagctgcagcattaCCGGCTGGTGCCCTGTTACCCATCAGCCCTGTACAGCCTGGGTACCTGCCCGGGCCTCGCGCCCAACCACCAGGTCCTTCTCTACAACCTGGACGACAACGGCTGACTGTCCACACCCCGCTGCctcttttcaaagtttttagaAATGCAGGGTAAGTTCATGATACGGGCATGTGGACATGTACTGTTTGTTCATAATCGGCAGGAGGAAAGCTGGTGTCGTTTTCCCCACGTACAACCTTTAAAAGGAAAATGTACCGTGGGGGTTTGTTTTGTTCGTATGCCAGGATGTCACCTCCTCTCTTCAATTTGCTAAGAGGCAGCAGTggatttgagaaaaaaaaaactcttttctcCTTCTGCTTCGGGATCAACGTGGGTCGGTCTCTGATTGTTGATGTCAAACTCTGTCGCAGCATCACTGCCATTTTATCATACGTGCAAATGTGAGAGACTCGAAGCAGGCTGTTGATGTTGTGTAACTGATTCTTATTGTTATCGTTGCTCATGTGAACCGTGAGCCTATTCAGGGATTTACAGACTGCAGGCTACGTTTTTGATGCACCTTGGCTTGCGTGGAGAATATGAATACGGGCTGTTATGCTTCTGTTATCTTTTTATGCTACTGTGTGATTTATGAAATATTCTGTGTGTAACATTCCCTGGACTGTGTGAATCGTCATGCTATCTCATGGTACTCCCTTCTCTGAGAGATGCATTTACTGCCTGTAGGGGAAGACAGTTGTTTTCTCTGTATTTGATGTCCTGTGTTTTGCATTACTTTGCCGCCCTCTGCTGGTGAAATAATTCATCTTGAAGCCCTTTATAGGGGCTGATGTGTTCAGATCTTACAATGCAAgtggatgaaaagaaaagatggTAACGTTTTACTTTAAGTCCCCTTGTTTAGCATTTATAAGCAGTACATGAATGGTTTGTAACACATTATAATTCAGTTGTATGCAGATATTTGTTTATTAACCTAACTCCTCCTGTAGGCACCCATAAATGGAGGCTGATGTATTCAAATGATTgacaatatttttaaaatacagataTAATACTATAAGATGTCTTCATAGGAGAAGTTACAATTGTCAACAAATACTATACATTAAGAAATACTTAAAGTGCCCGTATATCTGCGTACAACAGTGTTTTAACCCATTTATTAAAGGTTTATAAAGTGCTTGTAATACTAAATAGGAGGGGGTTAAAGTTAAGTGTTACAGAAAAGGGGAATAATCTTTCTTATTTGTTTTCCCTTTTTAGCTGATAGAAGTCatgttttgtgtttaaaaaaaaaggaaactggCATCTCTTCTCATTCTCTTGAGCTCTAAGAagtaaaaaacaacttttttgtCTGCTACCAAATAATTTGTACGTGATCGATTTTCAGCCCCATGGTGTTTTGAAGCTGAATTTCAGAGCGCAGAATGTCTTTAGATTGATATTATATTCCATATTTTTTACTATCAGTCCTTGGGCCCGtctcaggaaggaggtttaccaaactctgagtctaacccaggggcccgtttcaggaagaAGGTTTAAAAAACTCTGAGTTTAACccaggggcccgtttcaggaaggaggtttaccAAACTTTGAGTCTAACccaggggcccgtttcaggaagaACGTTTaccaaactctgagtctaacccagGGGCccatttcaggaaggaggtttaccaaactctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785394.1 True 2268 mRNA 0.44 4 3143326 3147322

Neighbor

gene id symbol gene type direction distance location
sgpp1 NA coding downstream 4644 3088632 ~ 3138682 (-)
ppp2r5eb ppp2r5e,LOC105935514 coding downstream 74734 2998247 ~ 3068592 (-)
LOC120549188 NA coding downstream 677507 2461536 ~ 2465819 (-)
LOC120548877 NA coding downstream 681865 2454273 ~ 2461461 (-)
LOC120548872 NA coding downstream 951510 2190362 ~ 2191816 (-)
syt16 syt16 coding upstream 11903 3159225 ~ 3212732 (-)
LOC120549371 NA coding upstream 141583 3288905 ~ 3323757 (-)
dtd2 dtd2 coding upstream 176595 3323917 ~ 3327504 (-)
galcb galc coding upstream 205603 3352925 ~ 3369053 (-)
si:dkey-288a3.2 LOC103361043,LOC106519978 coding upstream 265759 3413081 ~ 3501636 (-)
G199772 NA non-coding downstream 59214 3080519 ~ 3084112 (-)
G199753 NA non-coding downstream 88668 3054400 ~ 3054658 (-)
G199751 NA non-coding downstream 147017 2996065 ~ 2996309 (-)
G199728 NA non-coding downstream 163816 2979232 ~ 2979510 (-)
G199727 NA non-coding downstream 170967 2971934 ~ 2972359 (-)
G199811 NA non-coding upstream 131435 3278757 ~ 3279467 (-)
G199838 NA non-coding upstream 137738 3285060 ~ 3285600 (-)
G199839 NA non-coding upstream 139517 3286839 ~ 3287216 (-)
G199848 NA non-coding upstream 173154 3320476 ~ 3321692 (-)
G199894 NA non-coding upstream 338010 3485332 ~ 3521481 (-)
wdr89 wdr89,LOC102785763 other downstream 64679 3070625 ~ 3078647 (-)
kcnh5b kcnh5,LOC102299992 other downstream 178415 2699527 ~ 2964911 (-)
gphb5 gphb5,LOC104954562,LOC102297584,LOC108250814 other downstream 1049729 2062495 ~ 2093597 (-)
G199358 LOC795194 other downstream 2052347 1089967 ~ 1090979 (-)
G199305 NA other downstream 2185078 954007 ~ 958248 (-)
snapc1b NA other upstream 68510 3215832 ~ 3238597 (-)
G199898 vrk1 other upstream 367948 3515270 ~ 3522927 (-)
adck1 adck1 other upstream 1664966 4812288 ~ 5018774 (-)
LOC120549016 slirp other upstream 1880824 5028146 ~ 5042734 (-)
G200170 LOC102215143,LOC103358119 other upstream 1951279 5098601 ~ 5100820 (-)

Expression


Co-expression Network