ccdc28b (ccdc28b,LOC103357048,LOC102303603,LOC100707625,LOC104924809)


Basic Information

Item Value
gene id ccdc28b
gene name ccdc28b,LOC103357048,LOC102303603,LOC100707625,LOC104924809
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22764845 ~ 22772062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786086.1
GGGCCAATACCTGGCACACACAGCGGGGCGGACTGGCCCTTTAAGACGGATAAAGACAACAGCCCCGCACAAGCCGAGCGCATCGATCGCTGCCGCGCTTTACATCAGCGTTCACAGCACTGCTGCAGGAGGAATTCACCACCATTGAGCTATAAAGGTTCATTTATATGAAGTGTACGTAAACGTTTTTAAATGGCGGGAGGAGAAATGTGACACAGTGCTCAGCCGGTTTGCTCTCTGGTGCGTAATTGATTCGggGAGACTCTGGAGCTGCAGCACTCATTTTGGCACAGTCAGAATCCTCCAGAGAGTCCTCAGGGAGGGGAAGGCTGCTGCTTTTGAACTTCCTACCGTTGTTGTTTCATGAAGTCCAGTACACCAGCCAAACAGTGCACCCGCCTCCGTCTTACCCCAGAGAGgttcacttaaaaaaataaataatggaaGACAAACGCAAGAAGCGGAGCCCAAAGGTGTCTCTTCCccagccccctcctccccccatcAACCCCCGCAAACTCACCGTCCTGCCTGCCAGCAAAAGTGCCACCTTCTCTCTCGGCCTGCCACAGCCCCCCTCCCCCAAGAACAGAGGCAAGTACAAGAGATCTATAGGAGCGCCAGGACAGCCCAAAGAGGTGTTTACAGTCGTCGTACCTCCACCAAAGATCACCAGGCCCCACAAGGAGAAGCCCAGGGCCCCCCAGCCTGCAGGGCCCAGTAAAGTAGTCCAGTCTTCCCCCCTGCAGCACTCCTTTCTCACAGATGTCTCAGAcgtgagagagatggagggaggcctCCTCAATCTTCTTAACGACTTCCACTCAGGCAAACTACAGGCTTTTGGTAAGGTGTGCTCCTTTGAGCAACTGGAGCACGTGCGCGAGATGCAGGAGAAGTTGGCACGACTGCACTTTAGCCTCGACAGCCACGTGGAGGAACTTTCAGAGGACCAGAGGAAGTGTGCCTCCGACCACAACCTGGAGCACCTGCTCTGTAACCTGGAGGAGCTCAGCACCTCAATACAAAAGCTCCACTTGGCTGAGAACCAGGACCTGCCCAAGACATCTGGTCCCTGACAAAGCGAGGTGCGGAGGATGGCGACCAAACACTCATCTTCTCTCAACATCTAACCAGTCCAGGTTGCCATGGCATTGATCCCGCTGCCTTAGAAACAGAATGGAAAGAtctagaggaggaggagctatTTTTCCATTTGGTCATTGTAGCAGAGGGAGCATAGCGACTCAAAGCAGCAGAGCATTAAATGAACACTCAACCAAAACCATAAACCCCTCATTCATGGCACAAGAAATGATCAGATGGTTTACTGAACAGTTGTGTTAGATGAAATATGTTGTGTCGAAGTTATCAGCATGTTCTTGGCATCAACCAACTTGGCtccagttactagttacatcaTTGGGAACAAATAATTAAATCCAGGTGTAATCTTTGGTTCTCTATTTGTGTTCCAATTTTCATCGCAAAAAGCCAATTTCATGACATCTTAAGAAGTTGTGCTGATTTCATAATATGCCTCGTCTATTGCATCATTTCAGAAGGCATGTGTACCGGTTAGCAAATTTGAGCCATACTTAAGTAGCAAACATATTTGGCCCTTGTCGACAACACCACTGTGGTTAGCTCAGAACTTTAAAAGGGAGTTTTCACTTTTGCTATTATTGTGAATAAGCATTTTTATAGCTTTGCTTTTAAAGTTTAATACTGGGAAACAGACTGGATTTAGTAAAAGTTGGGTGAATCTTTGCTATAACTGTGCATTTTAAAAGGGACTATGTGAGAAGTTACACAATGTATGTTTGATGAACTTGAAAGTAGAATGGTTTATGTTTTTACCAATGTGTAGTCCAGCTACTGTATTTGTTGACACTGATGATGGGATAAATTGTGTCAGTGCTTTATCAGGGTTGCCTTTAGGCTTTGTTTTTGTGGATGATGGCTGGCCCAGTAGCAGCAGCCCTCCAAGCACAAGCTAGTCAACCTAACTACTGAAATGCTGTAAAATCAACTACTGTAACACGGAGGTCACGGGGCGTCTGACACGACAAGACATTCACTTGTCTCTCAtgatactgtacagtacaattTTAAAAGTGGCAGCTACTTTTATAGTTAAACATTTAGGGGGTAAGATTATGATGCGCATTGTATTTAATTCCAAACTTGGCAGCGAAGCCCAATCCATAATATTTTATCCCTGACAAGCAAGTTCAAGTGATAATGTTTTTCAATCTGAAACATATAAGCATGTCAAATCATtggtgtggtttttttttttaatactgctTTCTAAGCCTACCTCTTTTCTAAAGGCATGGTCTAGATAGCCTCTACAGTCACATATAACATTTCTAATTCTGGTTTCATAGAGATCCTTTTCGGTCAAcaattttctgttattttacacattaagaGGGATAATTCACCATTAGCTTTACATATAAAATGGGCGCAGTCAAAACAACATAAAACCTGTGAAGTGTGTATTCAGTACCTAGCCATTCATTATCATATATTCATAAATTATGTAACTTATTAGGCATAGACTGTGCGTTTCTTGGCTAGAATGTAACGGTCAAGATTAGACCTTAACAAATGTGGTCAAAGCCCCTCAATATCCCTTTTCCAATCCCATTAATATTTGAATGAAGCACCTGGAAGTTGGttttacagaaataaaacactttatttaaatatgAATCTGTCTTCGCTCTTGTTCACAAACAACTTCAATATAATTTAACAATAGATGCGTTAAAAGGCTACTTGAAGACTGGCACTATACTGAGACAGAATCAGATCTGGGCCTTTACGGTTTCTCAGGCAACGGCTGGAGCAAaactgagctccttttccttttcACGCTGTCCCCATCCAGAAGAATCGGTTCCAACCAAACCCTGATCTCGGCATCAGTGCACATATATATCTCcttaacaaaaatataaacaatttTGATCCTGCCAGTACATTTTggtcatgcaaaaaaaaaaaa
>XM_039786087.1
GGGCCAATACCTGGCACACACAGCGGGGCGGACTGGCCCTTTAAGACGGATAAAGACAACAGCCCCGCACAAGCCGAGCGCATCGATCGCTGCCGCGCTTTACATCAGCGTTCACAGCACTGCTGCAGGAGGAATTCACCACCATTGAGCTATAAAGGTTCATTTATATGAAGTGTACGTAAACGTTTTTAAATGGCGGGAGGAGAAATGTGACACAGTGCTCAGCCGGTTTGCTCTCTGggGAGACTCTGGAGCTGCAGCACTCATTTTGGCACAGTCAGAATCCTCCAGAGAGTCCTCAGGGAGGGGAAGGCTGCTGCTTTTGAACTTCCTACCGTTGTTGTTTCATGAAGTCCAGTACACCAGCCAAACAGTGCACCCGCCTCCGTCTTACCCCAGAGAGgttcacttaaaaaaataaataatggaaGACAAACGCAAGAAGCGGAGCCCAAAGGTGTCTCTTCCccagccccctcctccccccatcAACCCCCGCAAACTCACCGTCCTGCCTGCCAGCAAAAGTGCCACCTTCTCTCTCGGCCTGCCACAGCCCCCCTCCCCCAAGAACAGAGGCAAGTACAAGAGATCTATAGGAGCGCCAGGACAGCCCAAAGAGGTGTTTACAGTCGTCGTACCTCCACCAAAGATCACCAGGCCCCACAAGGAGAAGCCCAGGGCCCCCCAGCCTGCAGGGCCCAGTAAAGTAGTCCAGTCTTCCCCCCTGCAGCACTCCTTTCTCACAGATGTCTCAGAcgtgagagagatggagggaggcctCCTCAATCTTCTTAACGACTTCCACTCAGGCAAACTACAGGCTTTTGGTAAGGTGTGCTCCTTTGAGCAACTGGAGCACGTGCGCGAGATGCAGGAGAAGTTGGCACGACTGCACTTTAGCCTCGACAGCCACGTGGAGGAACTTTCAGAGGACCAGAGGAAGTGTGCCTCCGACCACAACCTGGAGCACCTGCTCTGTAACCTGGAGGAGCTCAGCACCTCAATACAAAAGCTCCACTTGGCTGAGAACCAGGACCTGCCCAAGACATCTGGTCCCTGACAAAGCGAGGTGCGGAGGATGGCGACCAAACACTCATCTTCTCTCAACATCTAACCAGTCCAGGTTGCCATGGCATTGATCCCGCTGCCTTAGAAACAGAATGGAAAGAtctagaggaggaggagctatTTTTCCATTTGGTCATTGTAGCAGAGGGAGCATAGCGACTCAAAGCAGCAGAGCATTAAATGAACACTCAACCAAAACCATAAACCCCTCATTCATGGCACAAGAAATGATCAGATGGTTTACTGAACAGTTGTGTTAGATGAAATATGTTGTGTCGAAGTTATCAGCATGTTCTTGGCATCAACCAACTTGGCtccagttactagttacatcaTTGGGAACAAATAATTAAATCCAGGTGTAATCTTTGGTTCTCTATTTGTGTTCCAATTTTCATCGCAAAAAGCCAATTTCATGACATCTTAAGAAGTTGTGCTGATTTCATAATATGCCTCGTCTATTGCATCATTTCAGAAGGCATGTGTACCGGTTAGCAAATTTGAGCCATACTTAAGTAGCAAACATATTTGGCCCTTGTCGACAACACCACTGTGGTTAGCTCAGAACTTTAAAAGGGAGTTTTCACTTTTGCTATTATTGTGAATAAGCATTTTTATAGCTTTGCTTTTAAAGTTTAATACTGGGAAACAGACTGGATTTAGTAAAAGTTGGGTGAATCTTTGCTATAACTGTGCATTTTAAAAGGGACTATGTGAGAAGTTACACAATGTATGTTTGATGAACTTGAAAGTAGAATGGTTTATGTTTTTACCAATGTGTAGTCCAGCTACTGTATTTGTTGACACTGATGATGGGATAAATTGTGTCAGTGCTTTATCAGGGTTGCCTTTAGGCTTTGTTTTTGTGGATGATGGCTGGCCCAGTAGCAGCAGCCCTCCAAGCACAAGCTAGTCAACCTAACTACTGAAATGCTGTAAAATCAACTACTGTAACACGGAGGTCACGGGGCGTCTGACACGACAAGACATTCACTTGTCTCTCAtgatactgtacagtacaattTTAAAAGTGGCAGCTACTTTTATAGTTAAACATTTAGGGGGTAAGATTATGATGCGCATTGTATTTAATTCCAAACTTGGCAGCGAAGCCCAATCCATAATATTTTATCCCTGACAAGCAAGTTCAAGTGATAATGTTTTTCAATCTGAAACATATAAGCATGTCAAATCATtggtgtggtttttttttttaatactgctTTCTAAGCCTACCTCTTTTCTAAAGGCATGGTCTAGATAGCCTCTACAGTCACATATAACATTTCTAATTCTGGTTTCATAGAGATCCTTTTCGGTCAAcaattttctgttattttacacattaagaGGGATAATTCACCATTAGCTTTACATATAAAATGGGCGCAGTCAAAACAACATAAAACCTGTGAAGTGTGTATTCAGTACCTAGCCATTCATTATCATATATTCATAAATTATGTAACTTATTAGGCATAGACTGTGCGTTTCTTGGCTAGAATGTAACGGTCAAGATTAGACCTTAACAAATGTGGTCAAAGCCCCTCAATATCCCTTTTCCAATCCCATTAATATTTGAATGAAGCACCTGGAAGTTGGttttacagaaataaaacactttatttaaatatgAATCTGTCTTCGCTCTTGTTCACAAACAACTTCAATATAATTTAACAATAGATGCGTTAAAAGGCTACTTGAAGACTGGCACTATACTGAGACAGAATCAGATCTGGGCCTTTACGGTTTCTCAGGCAACGGCTGGAGCAAaactgagctccttttccttttcACGCTGTCCCCATCCAGAAGAATCGGTTCCAACCAAACCCTGATCTCGGCATCAGTGCACATATATATCTCcttaacaaaaatataaacaatttTGATCCTGCCAGTACATTTTggtcatgcaaaaaaaaaaaa

Function

symbol description
ccdc28b Acts upstream of or within cilium assembly. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 1. Orthologous to human CCDC28B (coiled-coil domain containing 28B).

NR:

description
PREDICTED: coiled-coil domain-containing protein 28B-like

GO:      GO:0042384

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786086.1 True 3019 mRNA 0.44 6 22764845 22772062
XM_039786087.1 False 3003 mRNA 0.44 6 22764845 22772062

Neighbor

gene id symbol gene type direction distance location
LOC120549277 klhl28,LOC102787432 coding downstream 17307 22737837 ~ 22747538 (-)
mthfd1b mthfd1 coding downstream 29818 22722780 ~ 22735027 (-)
LOC120549245 NA coding downstream 66613 22681322 ~ 22698232 (-)
plcb2 plcb2 coding downstream 98131 22648288 ~ 22666714 (-)
LOC120548817 ankrd63 coding downstream 134490 22628336 ~ 22630355 (-)
tmem39b tmem39b coding upstream 826 22772888 ~ 22776944 (-)
zbtb8os zbtb8os coding upstream 13423 22785485 ~ 22788583 (-)
LOC120548822 NA coding upstream 22539 22794601 ~ 22799993 (-)
LOC120548820 LOC102776559 coding upstream 60740 22832802 ~ 22835500 (-)
si:ch211-67f13.7 LOC102776559 coding upstream 70527 22842589 ~ 22846393 (-)
G205297 NA non-coding downstream 45433 22705717 ~ 22719412 (-)
G205242 NA non-coding downstream 129383 22635201 ~ 22635462 (-)
G205219 NA non-coding downstream 237759 22524966 ~ 22527086 (-)
G205212 cep170b non-coding downstream 253440 22508455 ~ 22511405 (-)
G205205 NA non-coding downstream 271210 22493283 ~ 22493635 (-)
LOC120548708 NA non-coding upstream 116582 22888644 ~ 22895642 (-)
LOC120549686 NA non-coding upstream 137910 22909972 ~ 22920458 (-)
LOC120549687 NA non-coding upstream 178165 22950227 ~ 22951060 (-)
LOC120548728 NA non-coding upstream 363523 23135585 ~ 23150231 (-)
LOC120548729 NA non-coding upstream 483816 23255878 ~ 23266654 (-)
zbtb42 zbtb42,LOC102793331 other downstream 316902 22440729 ~ 22447943 (-)
chrm5a LOC103374637,LOC108232519,LOC106520150 other downstream 833579 21920885 ~ 21931266 (-)
LOC120549141 max,LOC103363129,LOC100701192,LOC101485218,LOC108232653,LOC102777802 other downstream 1007250 21752386 ~ 21757595 (-)
LOC120549379 LOC100705232,LOC102305635,LOC102778868,LOC104921326,LOC101482755 other downstream 1061075 21656220 ~ 21703770 (-)
LOC120548683 NA other downstream 1772157 20990937 ~ 20992688 (-)
LOC120549283 khdrbs1 other upstream 5943 22778005 ~ 22783472 (-)
G205380 NA other upstream 138045 22910107 ~ 22937857 (-)
LOC120549684 NA other upstream 172875 22944937 ~ 22947810 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other upstream 252099 23024161 ~ 23234798 (-)
LOC120548654 LOC106573685,LOC106610772 other upstream 935927 23707989 ~ 23710861 (-)

Expression


Co-expression Network