tmem39b (tmem39b)


Basic Information

Item Value
gene id tmem39b
gene name tmem39b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22772888 ~ 22776944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786088.1
AATATCGGCGGAATGTCCCTTTAAATGACTCTCCTCCCACAGGTCGTTAACATATCCGCGCCCCCGTCCACCCAGCGGCTAGTTGCACATCAACAATGACTGTCTTCGCTGATTTCATTGGAAAACACGTCAATATTTCAATAAATATTCTGAAAATGTATTGCGTTTAACTTGTTATCTATGCAACAGAGCAGCGTCTAACACAGACAACAGAGACTGCCACTGGTACAAATCAAGGAGAGAAATCATAAAACTAGACACATAGCTGGGAGAAGTGAGccgtgggtgtgtctgtgatggCTGGTGGAAGGAGAGGGGCGAACCGTACCACATACTGCAGACCTCCACTAAGCAGTGAACCAGGCTCCGTCAGCAATGGCAACCACTCGGCCAGCTCCCCGGTCACAGGGGTGCGATCTCGTACAAGGAATGGTTCGGGAACATGCATGTCCAGCCCCCCGCTGGCTGCACAGACGGTGGTCCCTCTGAAGCACTGTAAGATCCCCGAGTTATCTGTGGATCGTAACGTGCTGTTCGAGCTCCATCTGTTCTTCTGCCACCTCATCGCCCTCTTTGTCCATTACGTCAACATCTACAAGACTGTGTGGTGGTACCCCCCATCACACCCTCCCTCCCACACTTCACTGAACTTTCACCTTATTGATTATAACATGCTGGTGTTCACAATCATCATACTGGCAAGGAGGTTAATTGCAGCAATTGTAAAAGAGgcATCACAGAGCGGGAAACTATCCTTCCCTCATTCGATATTTCTAGTGATGGCTCGGTTTGCCGTGCTGACGCTGACAGGCTGGAGCCTGTGCCGCTCCCTCATTTACCTCTTCAGAACCTACTCTGTCCTCAGCCTGCTCTTCCTCTGCTACCCATTCGGGATGTATATTCCATTCTTCCGGCTGAGCTGTGACTTCCGGCGGGCCGGTCCACTTTCCCCCATTGCCAGCATCGGCTCCAAGGAGGTGGGCAGTGTGGGCCGGGGCAGGGACTACTTGACTGTGCTGAAAGAGACGTGGAAGCAGCACACCAGCCAGCTGTACGGCGTCCAGGCCATGCCGACGCACGCCTGCTGCCTCTCCCCGGATCTCATCCGCAAGGAAGTGGAGTACCTGAAGATGGACTTCAACTGGAGGATGAAGGAGGTGCTCGTCAGCTCGATGCTCAGTGCCTACTATGTGGCCTTTGTACCCGTCTGGTTTGTCAAGAGTACACAGTATGTGGACAAGCGTTGGTCTTGTGAGCTGTTCATCCTGGTGTCGGTCAGTACATCAGTGATCCTCATGAGGCACTTGTTGCCACCTCGATACTGTGACCTGCTCCACAAAGCTGCAGCTCACCTGGGCTGCTGGCAGAAAGTAGACCCCTCGCTCTGCTCCAATGTTCTTCAGCACATATGGACGGAAGAGTACATGTGGCCACAGGGAGTCCTGGTTAAACATAATAAGAACGTTTACAAGGCCATGGGTCACTACAATGTTGCAATTCCATCAGATGTGTCCCATTATCGCTTCTATTTCTTTTTCAACAAGCCTTTACGAATATTGAACATACTCATCATCCTGGAAGGTGCCATGATATTCTACCAGCTCTACTCGTTGATATGTTCAGAAAAGTGGCATCAGACGATATCACTGGCTCTGATTCTCTTCAGCAACTACTACGCCTTTTTCAAGCTTCTCAGAGACAGAATAGTCCTAGGAAAGGCATATTCGTACTCAAACAGCCCTTCAGACCAGAAAGTCAGTTAGACTTGAGTTATTATTGGTCGCATTCACTTTGGAACAACACAAACATGCCAgagctctgtattttttctacaaactgcattttgtgtcaCATTTTTTGTTCTGATCTgccataataaaataaatatttttgtattactttGAA

Function

symbol description
tmem39b Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM39B (transmembrane protein 39B).

NR:

description
PREDICTED: transmembrane protein 39B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786088.1 True 1905 mRNA 0.49 9 22772888 22776944

Neighbor

gene id symbol gene type direction distance location
ccdc28b ccdc28b,LOC103357048,LOC102303603,LOC100707625,LOC104924809 coding downstream 826 22764845 ~ 22772062 (-)
LOC120549277 klhl28,LOC102787432 coding downstream 25350 22737837 ~ 22747538 (-)
mthfd1b mthfd1 coding downstream 37861 22722780 ~ 22735027 (-)
LOC120549245 NA coding downstream 74656 22681322 ~ 22698232 (-)
plcb2 plcb2 coding downstream 106174 22648288 ~ 22666714 (-)
zbtb8os zbtb8os coding upstream 8541 22785485 ~ 22788583 (-)
LOC120548822 NA coding upstream 17657 22794601 ~ 22799993 (-)
LOC120548820 LOC102776559 coding upstream 55858 22832802 ~ 22835500 (-)
si:ch211-67f13.7 LOC102776559 coding upstream 65645 22842589 ~ 22846393 (-)
LOC120549695 LOC104963679,LOC104924644,LOC108232949,LOC106952285 coding upstream 71840 22848784 ~ 22862634 (-)
G205297 NA non-coding downstream 53476 22705717 ~ 22719412 (-)
G205242 NA non-coding downstream 137426 22635201 ~ 22635462 (-)
G205219 NA non-coding downstream 245802 22524966 ~ 22527086 (-)
G205212 cep170b non-coding downstream 261483 22508455 ~ 22511405 (-)
G205205 NA non-coding downstream 279253 22493283 ~ 22493635 (-)
LOC120548708 NA non-coding upstream 111700 22888644 ~ 22895642 (-)
LOC120549686 NA non-coding upstream 133028 22909972 ~ 22920458 (-)
LOC120549687 NA non-coding upstream 173283 22950227 ~ 22951060 (-)
LOC120548728 NA non-coding upstream 358641 23135585 ~ 23150231 (-)
LOC120548729 NA non-coding upstream 478934 23255878 ~ 23266654 (-)
zbtb42 zbtb42,LOC102793331 other downstream 324945 22440729 ~ 22447943 (-)
chrm5a LOC103374637,LOC108232519,LOC106520150 other downstream 841622 21920885 ~ 21931266 (-)
LOC120549141 max,LOC103363129,LOC100701192,LOC101485218,LOC108232653,LOC102777802 other downstream 1015293 21752386 ~ 21757595 (-)
LOC120549379 LOC100705232,LOC102305635,LOC102778868,LOC104921326,LOC101482755 other downstream 1069118 21656220 ~ 21703770 (-)
LOC120548683 NA other downstream 1780200 20990937 ~ 20992688 (-)
LOC120549283 khdrbs1 other upstream 1061 22778005 ~ 22783472 (-)
G205380 NA other upstream 133163 22910107 ~ 22937857 (-)
LOC120549684 NA other upstream 167993 22944937 ~ 22947810 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other upstream 247217 23024161 ~ 23234798 (-)
LOC120548654 LOC106573685,LOC106610772 other upstream 931045 23707989 ~ 23710861 (-)

Expression


Co-expression Network