LOC120549287 (LOC101487772,LOC105939742,LOC102799341,LOC100702802,LOC107392602)


Basic Information

Item Value
gene id LOC120549287
gene name LOC101487772,LOC105939742,LOC102799341,LOC100702802,LOC107392602
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 25730440 ~ 25739581 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786098.1
ATCTTGAGGCCAGAGTCTCCTGTggtctcctcctccctcctgttcTGCAGCTGCACACCTCTCTTAACTCCTCTCTCGCTTGATTACTCCTATCTTCGCAGAAACAATGGCCACAGCTGGTAAGGTTATCAAGTGCAAGGCAGCAGTGGCGTGGGAGCCCAACAAGCCTTTGGTGATTGAGGAGATTGAGGTAGCCCCGCCCCAGGCCAACGAGGTCCGCATCAAGATTGTGGCGACTGCAGTGTGCCATACGGACCTGCACCACCTTTTGGAGAGTATGTGTAAAGACGGATTCCCTGTAGTCCTCGGGCATGAGGCAGCCGGCATCGTAGAGAGCGTCGGTTCTGGAGTTACTGAATTTCAGCCAGGAGACAAGGTTATCCCTCTATTCATCTCCCAGTGTAGAGAATGTCGCTTCTGTAAGAGTCCAAAGACCAACCAGTGTGAGAAAGGATGGGCTGCTACTGGTCATGATGTGATGGCATCATCAAACTACAGGTTTACCTGTAAGGGGAAGAAGATTCTGCAGTTTGTGGGTACCAGTACCTTCTCTGAGTACACCGTGGTTAACCAGATGGCTGTGGCGAAGATCGACCCCGCTGCTCCTCTGGACAAAGTCTGTCTCATTGgttgtggggtctgcacaggATATGGAGCCGCTGTTAATACTGCTAAGGTGGAACCGGGCTCCACATGTGCTGTGTTTGGCCTTGGAGCTGTGGGTTTGGCTGCAGTCATGGGCTGCAAGGCTGCAGGAGCCAAGAAGATTATTGCTGTTGACATCAATCCAGAGAAGTTTGAAAAGGCCAAAGTGTTTGGTGCGACCGACTTTGTGAACCCCAAAGATCACAGTAAACCCATCAGCCAAGTGCTGTCTGAGATGACTAACGGAGGAGTGGACTTCTCTCTGGAATGTGTCGGGAATGTCGGAGTCATGCGCAGTGCCTTGGAGTCCTGTGTTCAAGGTTGGGGTGTCAGCGTGATTGTTGGCTGGACGAACTTAGAAGACTTTTCTGCCCGACCCATTCAGCTCATCGCTGGACGCACATGGAAGGGCTCTGTGTTTGGAGGCTTTAAGGGTAAGTATGATGTTCCCCAGATGGTTAAAGCCTACCTGGACAAGAAGGTGAAGGTGGATGAGTTCATCACTCACAACATGACTTTGGACCAGGTCAATGATGCCATTGAACTGATGAAGCAAGGCAAATGCATCCGGACGGTCCTGCACGTTTCTCCACAATAAGAACATTATGGTCCAAAGTCCGTGGACTTACGTGGACCCCAGGAGGATTAGCTGTGCTCAAAGGCACAGTGAATGGGGATCATATAATAAACTAAAGTAATTAAATAGTTCAACAAATCTCAacataaaacaaattatacaatGCAAACAATAAAGAGGAATTTCAAATTATGCAAGCTATACATGCCTGAATTTTAATACTCAATTGTATTGCGTGGATTATGTGGGATCTGTAGTGTTCGTATAAGGAAAAAGCTAAACATGTGTTTatagagaaaaataaatggTCTAAACAAA

Function

NR:

description
alcohol dehydrogenase 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786098.1 True 1540 mRNA 0.48 9 25730440 25739581

Neighbor

gene id symbol gene type direction distance location
eif4eb eif4e,LOC103460523,LOC106937591,LOC102230854,LOC103354029 coding downstream 34297 25684204 ~ 25696143 (-)
lingo2b lingo2,LOC104953430 coding downstream 61840 25626389 ~ 25668600 (-)
c9orf72 LOC103354026,LOC101465392 coding downstream 123306 25591661 ~ 25607134 (-)
kiaa1109 kiaa1109 coding downstream 142623 25495225 ~ 25587817 (-)
sntg2 sntg2 coding downstream 247446 25402512 ~ 25482994 (-)
LOC120549286 LOC100702802,LOC101487772,LOC107392602,LOC102799341,LOC105939742,LOC101078894 coding upstream 124 25739705 ~ 25746709 (-)
LOC120549285 LOC101487772,LOC100702802,LOC102799341,LOC107392602,LOC105939742,LOC107085779,LOC101078894 coding upstream 8413 25747994 ~ 25755670 (-)
LOC120549112 LOC103354036,LOC102215713,LOC102292014 coding upstream 24237 25763818 ~ 25784558 (-)
LOC120549759 NA coding upstream 107213 25846794 ~ 25850389 (-)
lrfn5a lrfn5,LOC103376550,LOC102799810 coding upstream 368107 26107688 ~ 26236679 (-)
G205978 NA non-coding downstream 341051 25389151 ~ 25389389 (-)
G205941 NA non-coding downstream 463405 25266831 ~ 25267035 (-)
G205937 NA non-coding downstream 494719 25234296 ~ 25235721 (-)
G205887 NA non-coding downstream 581334 25116784 ~ 25149106 (-)
LOC120549113 LOC103354038 non-coding upstream 51976 25791557 ~ 25795395 (-)
G206111 NA non-coding upstream 157235 25896816 ~ 25897191 (-)
G206151 NA non-coding upstream 544794 26284375 ~ 26284746 (-)
G206182 NA non-coding upstream 883495 26623076 ~ 26653296 (-)
G206183 NA non-coding upstream 916306 26655887 ~ 26656097 (-)
LOC120549744 NA other downstream 362573 25332890 ~ 25367867 (-)
gnmt gnmt other downstream 385786 25268304 ~ 25344654 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other downstream 656316 25072355 ~ 25074124 (-)
G205845 bsdc1 other downstream 773399 24953206 ~ 24957041 (-)
fndc5a fndc5,LOC108237574 other downstream 853095 24843721 ~ 24877345 (-)
G206198 fbxo33,LOC102800092 other upstream 1082107 26821688 ~ 26825064 (-)
LOC120549840 NA other upstream 2272458 28012039 ~ 28034752 (-)
LOC120549715 lrfn2,LOC103357516,LOC102785515 other upstream 2306624 28046205 ~ 28204448 (-)
G206919 ccdc88c other upstream 4194681 29934262 ~ 29934566 (-)
LOC120549387 NA other upstream 4942346 30681927 ~ 30703278 (-)

Expression


Co-expression Network