LOC120549330 (cldn20,LOC102228876)


Basic Information

Item Value
gene id LOC120549330
gene name cldn20,LOC102228876
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 23762334 ~ 23767849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786168.1
agagagagagagagagagagcgccagAGCGCTACGGTTATTTCTCCCAGGCTCCGGCCAAGCCTGTGTGGTCGATAGAGCAGGAATGTCCTCTCATAGACTGTTGCTAAGAAAATGGATGGCTTGAATGGACCCGTGATCCGGGCTGAATTCTCCCCCTCATCAGCCTACTGCCTTTcaatgtgtgactgtgtgtgtttacaggaaTCACTGTGAACAACGTGACGCGTCAGCGCCAGCTCTGCACCAGCCGGGTCCAGTGGAGCCGCAGCTGAAGAGCTGAGAAACTGGGGATTTGACTGGCAGCTGGTACACCActaagggaggagagagaggcggCTGGGCAGTGGGGTCGACGAGCCTAGCTGGCGCTGGATGAATGCTGCCTGGCGAGGACAAGGGTTGAGGCGGCAGCAGCATCAACTTGAAAAGGAGCATGGCATCCACAGGCATGCAGATATTTGGATTTGTTCTAGCGCTGTTGGGCATCATGGGTGCTATGGTGGCCACTCTGCTGCCTAACTGGAAGGTCAGCGCAGATGTGGGCTCCAACATCATCACAGCGATTTCCCAGATGCAGGGTCTGTGGATGGACTGCACATGGTACAGCACAGGTATGTTCAGTTGCACACTTAAGTATTCTGTGCTTTCACTACCTGCGTACTTGCAGACTGCCCGCACCACTATGGTGCTCTGCTGCGTAATGGCTGCCATGGGCCTCTGCCTTGCATCCCTTGGGCTAAAATGCACACGATGGGGAGGTGGACGGCGCTCCAAGCGGCATGCTGCAATTGCCAGTGGTGGCTGCTTTGTCGCTGCAGGCTTTCTGTGTCTGGTGCCTGCTTCCTGGTTTACCAACGAGGTCATCACCAACTTTCTGGACTCCAGTGTGCCCGAGAGCAATAAGTTTGAGCCTGGGGGTGCTGTGTACGTGGCCTTTGTTTCAGCAGGATTCCTGTTCGTGGGGGGGTCCATCTTCTGTATGTCCTGCTCGGGGAAAAGGCATGGCCCCCAGGATCTGGTCCTGCTCCCTCCCCCTGACAAATTGctgctccagcagcagcagcaacagctgcttcagcagcagcaggagctcCAGCACCAGTActgctctctctccccattAGACAATAAGACTGGCTACAGCCTGCAGGACTATGTGTAATAAAGCAGCGCTGTGTACGCTACGGCTTAAAGGGAGACGAGCCTGAGGGGAAACCATCACAGCTAATGCTACACACTTGGCTCCACTCcagatggagatggagaaaaAATGAGGAGAGCAATAACTTTGAATTCATTTTACCGTCTCCTCCTTCTTGCTCTTCTCCCTTTTTCTGTTTTGCAAGCACAAGCAGTGGAGGTATTCCCTAAGCAGCACCTTGGAACAAACAGTGTGAATGTGTAAGGACCCGGGATAAGGTGCTGCAGCATCGAAGGAAGCTGCTAACCAAATGCAGACATCCTTCATCAGTAAAATCACAGAATGAGTTCCCTGGGGAATGGATTAAGCAAATAAGGAAGCCTTCAgtgtagattttttttcctcGCCAAAGGTTTgacttgaaagaaaaaaaagcaatcatTTAGCTGCTATTTACAATCGTCTGGTACCCTTTTCAATTGACAAAATAGGCAATATAATGCCTTAGAAACCTTTTCATAGCAAGCCATTGTAGTTTTTCGTATACTTATCCACTAGAATGCTACAAAGAATTGATTGAAATGAATATTTTTGTTAGCTACTAGAATGATGTTGATATTTTGCCTCTCAAGCATGCTGTGGGGAGCCTGTCTGTGTATTAATACAGCGGCATGCCTGGTAGAAGACTGAGACATAGCCACAAAATGCCTGTGCCTGGAAAGCTGTAGAAACATTACCCTGCTGTAACTGTTTAAAGAGGACTGTCAGGAGGAGTAGATTTGGACTGCTGGGCTGGATTGAAGACAGAAAATGCAGACAAACAGTTGCCTgcttctctctctgcaggtggaaatatgagagagatggagagaaattgACAGAAAGAGATTCAATCCCTTAGCAGAATGGACTATGTGATGTGCTGTTTTTTAATATTTCTATCAAGACAAAAACATACTGCCTGTAAGAAGCGGCTACCCATTCTAATCCATCTACCGATTCCTTCACACCCTCAGACATGCACACCCGCATACTTACTCGTGCTCTCGTGCCTGTTTGTGTACACAGTAAACACTCAGACACGCCGGCTTTTTGCATGTGCTTTTCACTCCAGTCATCCTCCTCCGCACTGCCATGGAAACAGAATTCAGCATTCAAATATCTGTATTGTCTGGGGGTATGTGGATGTCAGTCAGCGATTTGAAGTTGTTTAGGGGGGCATTTTTGTCTCTAGGCATGGCGCTAAAGCTTTATTCAGGGCTTTTGCTAACACTACTTTTGCCAATCCCCTTTATTAGCAAGTGACATGAGGCAGCATCCCTGTTACATGGTTTTGGAGAATGCTCTTCTTTGCTGCCCACTGCTATGGTGTATATACCATGCGAGTAGTCTCACAGAGATAAATGGATGTTTAATGGTGCAGTGGCAGGGAGGCGAAGACGAGGCAGATAAGGAGAAGCTTCTTGAGTCATGGTCGACTGGGTAGCTGTGTGGCAGGCAGCTTAAAAAAGGTTTGAGTCATTCTCCATATGTGACTTGTTTTCCAAGTGCGTCAGCAGTGCGCATATGCTACCAGTCTGCACCTGCAGAAGGTCTCAGTGTCTTAAATTGCAGCCACTTGACTGTGCCAccattcctttttttcccccctcactctctctgtccggTTATTGTCACGTCACATGGATGTGATCGCTGACAAGAGAGAGCTTATGCATGTTGAAAGCATGGGCGCCccaacacacaagcacacatcgACAAAACTCCCACCTACTCATGTCAGCAGCACTGTTACGCTTTCAGACAGTAATGTTCCAGAGGGATAACCGATGTTTTCATTCTTAAGACGGGCCTTGGCAGTGATGTATAGAACTGCAcattctctccttctctctcataaACATGCAGCTTCCTGGGGGAGAGCAGATGGCTAAGCCCAGCTCACCACCTGCAGGCTGCTGTCGCCACGGGCATCTCTGTGGGCACCACTGCCGGCCCTGGCAGCCCTCTGGGACCAGGTTTCCATCCCACCCTGACTTAGCCATCTTGCTCAGCACAGACCATAGCCGACAGAACTGGCTTCCTGACAAAAACTGCCCAGGCACCATAACCAATGCAATAAACAAAGAAGAATGTGCCATGTCATCAACTAATACTGACACGTTATGTGTTTCGAGAATGTGCCAAATCGTTTCATGATGACATGTTTTAATACTTTCTGGAGTTctgtctgtttattttttattgcgtTGTTTGTACATGAATTATACATCAGCAAATGTTTTATGGATTTGTGATTTGTTCTGCCAGACTAAGTCTTAAGTCAACTAGATGCTTGTGTACAGTCCAGTGCAGCTTTTGAGGGTTATTTCAAATCCTCTTTATTCCTCATTTCCCAAAGCACAGCAAGACTTCACCGCGATGAGTTGTGATGTTTCACTGGAAAGACACGAGTGTGGTATTttctaaatgtatttgtttcagGAATTCTGGTTCACTCCAAGTCTGTGACAACTGTACACAAGTATCTAGGCTTTCAAGGTGTTTGTTTTCACTGAGGGATCAGGACTCCCTCAGattgtttatatataaaatacgaTATCATGTTCATACCATATCTTCTTTATAAGAAGACTACTCAATGCACCTTTGCTTGTGTTACTTTATTTGACAGCTGTTTGTTTCAAACGGCTGTGCATTCCAAGCTCCCTGGACCAGTACAAATACATAACACTATTGGCactctggaagaaaaaaaaaaaaaaaaagagaacaattTCTGTCTGATGGGATTCAGGAGGAAAATAGCAGCTAgagatttctctttttttgtggcTGTGCAGTTTGATCATCAGCACGCAATTTTAATTAGCTTATAAATGGCCAGAGTGCAAAGTGACTATGTCTTAAAAATGTAAAGAGTTACAACTCTCctgcatatactgtactgtaccaaTATATTGATTTATCATTTTGATAACTGCAGCTTATTTTTGTGGATGCTTTAGCACTTCTTACTTTGCCGGAGCATATTTGTGATGATTAACAGTTCACAAGTTCTGATACAGTTGTCTCAATGTGCTTGTGCAAGTAGTTCTATTTTTTACCAATAaactattttgtgaaagcaa
>XM_039786169.1
CAGCTTAATGGGCGTGTCAGGTTTAATACAATCAAAGATTCTCTAGCTAAAGCGCTCTGCGTATAGCTGGTTTGgaaTCACTGTGAACAACGTGACGCGTCAGCGCCAGCTCTGCACCAGCCGGGTCCAGTGGAGCCGCAGCTGAAGAGCTGAGAAACTGGGGATTTGACTGGCAGCTGGTACACCActaagggaggagagagaggcggCTGGGCAGTGGGGTCGACGAGCCTAGCTGGCGCTGGATGAATGCTGCCTGGCGAGGACAAGGGTTGAGGCGGCAGCAGCATCAACTTGAAAAGGAGCATGGCATCCACAGGCATGCAGATATTTGGATTTGTTCTAGCGCTGTTGGGCATCATGGGTGCTATGGTGGCCACTCTGCTGCCTAACTGGAAGGTCAGCGCAGATGTGGGCTCCAACATCATCACAGCGATTTCCCAGATGCAGGGTCTGTGGATGGACTGCACATGGTACAGCACAGGTATGTTCAGTTGCACACTTAAGTATTCTGTGCTTTCACTACCTGCGTACTTGCAGACTGCCCGCACCACTATGGTGCTCTGCTGCGTAATGGCTGCCATGGGCCTCTGCCTTGCATCCCTTGGGCTAAAATGCACACGATGGGGAGGTGGACGGCGCTCCAAGCGGCATGCTGCAATTGCCAGTGGTGGCTGCTTTGTCGCTGCAGGCTTTCTGTGTCTGGTGCCTGCTTCCTGGTTTACCAACGAGGTCATCACCAACTTTCTGGACTCCAGTGTGCCCGAGAGCAATAAGTTTGAGCCTGGGGGTGCTGTGTACGTGGCCTTTGTTTCAGCAGGATTCCTGTTCGTGGGGGGGTCCATCTTCTGTATGTCCTGCTCGGGGAAAAGGCATGGCCCCCAGGATCTGGTCCTGCTCCCTCCCCCTGACAAATTGctgctccagcagcagcagcaacagctgcttcagcagcagcaggagctcCAGCACCAGTActgctctctctccccattAGACAATAAGACTGGCTACAGCCTGCAGGACTATGTGTAATAAAGCAGCGCTGTGTACGCTACGGCTTAAAGGGAGACGAGCCTGAGGGGAAACCATCACAGCTAATGCTACACACTTGGCTCCACTCcagatggagatggagaaaaAATGAGGAGAGCAATAACTTTGAATTCATTTTACCGTCTCCTCCTTCTTGCTCTTCTCCCTTTTTCTGTTTTGCAAGCACAAGCAGTGGAGGTATTCCCTAAGCAGCACCTTGGAACAAACAGTGTGAATGTGTAAGGACCCGGGATAAGGTGCTGCAGCATCGAAGGAAGCTGCTAACCAAATGCAGACATCCTTCATCAGTAAAATCACAGAATGAGTTCCCTGGGGAATGGATTAAGCAAATAAGGAAGCCTTCAgtgtagattttttttcctcGCCAAAGGTTTgacttgaaagaaaaaaaagcaatcatTTAGCTGCTATTTACAATCGTCTGGTACCCTTTTCAATTGACAAAATAGGCAATATAATGCCTTAGAAACCTTTTCATAGCAAGCCATTGTAGTTTTTCGTATACTTATCCACTAGAATGCTACAAAGAATTGATTGAAATGAATATTTTTGTTAGCTACTAGAATGATGTTGATATTTTGCCTCTCAAGCATGCTGTGGGGAGCCTGTCTGTGTATTAATACAGCGGCATGCCTGGTAGAAGACTGAGACATAGCCACAAAATGCCTGTGCCTGGAAAGCTGTAGAAACATTACCCTGCTGTAACTGTTTAAAGAGGACTGTCAGGAGGAGTAGATTTGGACTGCTGGGCTGGATTGAAGACAGAAAATGCAGACAAACAGTTGCCTgcttctctctctgcaggtggaaatatgagagagatggagagaaattgACAGAAAGAGATTCAATCCCTTAGCAGAATGGACTATGTGATGTGCTGTTTTTTAATATTTCTATCAAGACAAAAACATACTGCCTGTAAGAAGCGGCTACCCATTCTAATCCATCTACCGATTCCTTCACACCCTCAGACATGCACACCCGCATACTTACTCGTGCTCTCGTGCCTGTTTGTGTACACAGTAAACACTCAGACACGCCGGCTTTTTGCATGTGCTTTTCACTCCAGTCATCCTCCTCCGCACTGCCATGGAAACAGAATTCAGCATTCAAATATCTGTATTGTCTGGGGGTATGTGGATGTCAGTCAGCGATTTGAAGTTGTTTAGGGGGGCATTTTTGTCTCTAGGCATGGCGCTAAAGCTTTATTCAGGGCTTTTGCTAACACTACTTTTGCCAATCCCCTTTATTAGCAAGTGACATGAGGCAGCATCCCTGTTACATGGTTTTGGAGAATGCTCTTCTTTGCTGCCCACTGCTATGGTGTATATACCATGCGAGTAGTCTCACAGAGATAAATGGATGTTTAATGGTGCAGTGGCAGGGAGGCGAAGACGAGGCAGATAAGGAGAAGCTTCTTGAGTCATGGTCGACTGGGTAGCTGTGTGGCAGGCAGCTTAAAAAAGGTTTGAGTCATTCTCCATATGTGACTTGTTTTCCAAGTGCGTCAGCAGTGCGCATATGCTACCAGTCTGCACCTGCAGAAGGTCTCAGTGTCTTAAATTGCAGCCACTTGACTGTGCCAccattcctttttttcccccctcactctctctgtccggTTATTGTCACGTCACATGGATGTGATCGCTGACAAGAGAGAGCTTATGCATGTTGAAAGCATGGGCGCCccaacacacaagcacacatcgACAAAACTCCCACCTACTCATGTCAGCAGCACTGTTACGCTTTCAGACAGTAATGTTCCAGAGGGATAACCGATGTTTTCATTCTTAAGACGGGCCTTGGCAGTGATGTATAGAACTGCAcattctctccttctctctcataaACATGCAGCTTCCTGGGGGAGAGCAGATGGCTAAGCCCAGCTCACCACCTGCAGGCTGCTGTCGCCACGGGCATCTCTGTGGGCACCACTGCCGGCCCTGGCAGCCCTCTGGGACCAGGTTTCCATCCCACCCTGACTTAGCCATCTTGCTCAGCACAGACCATAGCCGACAGAACTGGCTTCCTGACAAAAACTGCCCAGGCACCATAACCAATGCAATAAACAAAGAAGAATGTGCCATGTCATCAACTAATACTGACACGTTATGTGTTTCGAGAATGTGCCAAATCGTTTCATGATGACATGTTTTAATACTTTCTGGAGTTctgtctgtttattttttattgcgtTGTTTGTACATGAATTATACATCAGCAAATGTTTTATGGATTTGTGATTTGTTCTGCCAGACTAAGTCTTAAGTCAACTAGATGCTTGTGTACAGTCCAGTGCAGCTTTTGAGGGTTATTTCAAATCCTCTTTATTCCTCATTTCCCAAAGCACAGCAAGACTTCACCGCGATGAGTTGTGATGTTTCACTGGAAAGACACGAGTGTGGTATTttctaaatgtatttgtttcagGAATTCTGGTTCACTCCAAGTCTGTGACAACTGTACACAAGTATCTAGGCTTTCAAGGTGTTTGTTTTCACTGAGGGATCAGGACTCCCTCAGattgtttatatataaaatacgaTATCATGTTCATACCATATCTTCTTTATAAGAAGACTACTCAATGCACCTTTGCTTGTGTTACTTTATTTGACAGCTGTTTGTTTCAAACGGCTGTGCATTCCAAGCTCCCTGGACCAGTACAAATACATAACACTATTGGCactctggaagaaaaaaaaaaaaaaaaagagaacaattTCTGTCTGATGGGATTCAGGAGGAAAATAGCAGCTAgagatttctctttttttgtggcTGTGCAGTTTGATCATCAGCACGCAATTTTAATTAGCTTATAAATGGCCAGAGTGCAAAGTGACTATGTCTTAAAAATGTAAAGAGTTACAACTCTCctgcatatactgtactgtaccaaTATATTGATTTATCATTTTGATAACTGCAGCTTATTTTTGTGGATGCTTTAGCACTTCTTACTTTGCCGGAGCATATTTGTGATGATTAACAGTTCACAAGTTCTGATACAGTTGTCTCAATGTGCTTGTGCAAGTAGTTCTATTTTTTACCAATAaactattttgtgaaagcaa

Function

symbol description
cldn20 Is expressed in brain; gill; kidney; spleen; and testis.

NR:

description
claudin-20

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786168.1 True 4274 mRNA 0.46 2 23762334 23767274
XM_039786169.1 False 4145 mRNA 0.46 3 23762334 23767849

Neighbor

gene id symbol gene type direction distance location
LOC120549835 LOC103353749 coding downstream 19358 23717891 ~ 23742976 (-)
tmem30aa LOC103353750,LOC104952165 coding downstream 44945 23711892 ~ 23717389 (-)
col12a1a col12a1 coding downstream 54965 23650668 ~ 23707369 (-)
dlgap2a dlgap2 coding downstream 244339 23348792 ~ 23517995 (-)
cln8 cln8 coding downstream 420543 23337958 ~ 23341791 (-)
LOC120549331 tiam2,scaf8 coding upstream 15131 23782980 ~ 23904648 (-)
ipcef1 cnksr3 coding upstream 136954 23904803 ~ 23914310 (-)
LOC120549247 cnksr3 coding upstream 152342 23920191 ~ 23955284 (-)
LOC120549070 qpct,LOC100700099 coding upstream 189926 23957775 ~ 23965760 (-)
pax1a pax1,LOC103359018,LOC101466677,LOC102791619,LOC100700371 coding upstream 359282 24127131 ~ 24131781 (-)
G205493 NA non-coding downstream 188322 23536946 ~ 23574012 (-)
G205492 NA non-coding downstream 202142 23528223 ~ 23560192 (-)
G205494 LOC102076813 non-coding downstream 226771 23529490 ~ 23535563 (-)
G205489 NA non-coding downstream 238020 23518903 ~ 23524314 (-)
LOC120548729 NA non-coding downstream 495680 23255878 ~ 23266654 (-)
LOC120548836 NA non-coding upstream 418947 24186796 ~ 24197384 (-)
G205643 NA non-coding upstream 464793 24232642 ~ 24233109 (-)
LOC120549041 NA non-coding upstream 662125 24429974 ~ 24433833 (-)
G205701 NA non-coding upstream 675970 24443819 ~ 24446396 (-)
G205702 zbtb8a non-coding upstream 708086 24475935 ~ 24476893 (-)
LOC120548654 LOC106573685,LOC106610772 other downstream 51473 23707989 ~ 23710861 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other downstream 527536 23024161 ~ 23234798 (-)
LOC120549684 NA other downstream 814524 22944937 ~ 22947810 (-)
G205380 NA other downstream 824477 22910107 ~ 22937857 (-)
LOC120549283 khdrbs1 other downstream 978862 22778005 ~ 22783472 (-)
runx3 runx3 other upstream 848069 24615918 ~ 24664770 (-)
rsrp1 NA other upstream 984304 24752153 ~ 24755421 (-)
fndc5a fndc5,LOC108237574 other upstream 1075872 24843721 ~ 24877345 (-)
G205845 bsdc1 other upstream 1185357 24953206 ~ 24957041 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other upstream 1304506 25072355 ~ 25074124 (-)

Expression


Co-expression Network