LOC120549589 (hdac1,LOC104919311,LOC102207424,LOC103153388,LOC108237416)


Basic Information

Item Value
gene id LOC120549589
gene name hdac1,LOC104919311,LOC102207424,LOC103153388,LOC108237416
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24519641 ~ 24526632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786607.1
TATTACATCCCATTGATTAGACGCGATACAAACTATCCGCCTCTTGTCGCTGTTGTCTCCTGTGGTGTGCGCTAAAAGCCAGCCAAAAAAGCACTAAAATGGCGCTTACTTCCCAAGGAACAAAGAAAAAAGTTTGCTACTACTATGATGGTGATGTTGGAAATTACTACTATGGTCAGGGGCACCCAATGAAGCCCCACCGAATCCGCATGACTCACAACCTGTTGCTCAACTATGGACTCTACAGAAAAATGGAGATATATCGTCCACACAAAGCCAGCGGAGAAGAGATGACCAAGTATCACAGTGATGATTACATCAAATTCCTGCGTTCAATTCGACCAGACAACATGTCAGAGTACAGCAAACAAATGCAGAGATTTAATGTGGGGGAGGACTGTCCAGTGTTTGATGGTTTATTTGAGTTCTGCCAGCTCTCAGGAGGGGGCTCCGTTGCTGGTGCGGTGAAGTTGAACAAACAGCAGACTGACATTGCTATCAACTGGGCTGGAGGCCTGCATCACGCCAAGAAGTCTGAGGCTTCTGGCTTTTGCTATGTCAATGACATCGTACTGGCTATCCTGGAGTTACTGAAATACCACCAGAGAGTTCTGTACATAGATATTGACATCCATCATGGAGATGGTGTTGAAGAGGCCTTCTACACCACAGAccgtgtcatgacagtgtcctTCCACAAGTATGGAGAGTACTTCCCTGGGACAGGTGACCTGAGGGACATCGGTGCTGGTAAGGGTAAATATTATGCTGTGAATTACCCGCTGAGGGATGGGATTGACGATGAGTCATATGAAGCCATATTCAAACCTATCATGGCCAAGGTGATGGAGATGTACCAACCCAGCGCAGTGGTTCTGCAGTGTGGAGCTGATTCACTGTCAGGAGACAGGCTTGGTTGCTTCAACCTCACCATTAAAGGCCATGCCAAGTGTGTGGAGTACATGAAGAGTTTCAACCTGCCACTGCTAATGCTGGGTGGAGGAGGCTACACCATCCGTAATGTGGCACGCTGCTGGACATATGAGACTGCTGTAGCCCTTGATACCTCCATCCCCAACGAGCTCCCTTACAACGACTACTTTGAGTACTTCGGACCAGACTTCAAGCTTCACATCAGCCCCTCCAACATGACCAATCAGAACACCAATGACTACCTGGAGAAGATCAAGCAGCGCTTGTTTGAGAACTTGCGTATGCTGCCCCACGCCCCGGGAGTCCAGATGCAGGCCATCCCCGAGGATGCCGTACAGGAGGACAGTGGcgatgaggaggaggatgacCCCAACAAACGCATCTCCATCCGTGCTCATGACAAGAGGATAGCGTGTGAGGAGGAGTTCTCTGACTCTGAAGATGAAGGCGAGGGAGGCCGCAGAAACGCAGCCAGCTTCAAGAAAGCCAAGCGAGTCAAAactgaaggagagaaagaggtggaagaaaaggagaagaaaggTGAGGAAGAAACAAAAGAagcaaaagaagaagagaaggtgccagaggaggagaaaatggACACATCAAAGCCAAAAGAGGAGTCCAAGACACCTTGAGGTCCTCAGCAGCCAATGATGACATTGCAACTGATCAGAacgcatcttttttttttttttggatacaTCATCTTTCCAGGCTGCTGCTGTGGAAATCGGTGAAGAACTGTACCTTTTGTAATGAGACCCCACTCCATCAAAATGGGGGCGGGGGATCTAAATATTTTCTAGGACACCTTTTCAACCTTACCTGTTTATGGACTGAGGTCAGACTGAGTGTTTCGTTTTTTTGaatgctttttcattttttattaatctTTTTATTCTGTGACACTTGCTTTTCCCTTGTGATGCAACTCTGTAAAAATGATTTAGTACATGTATGCTTTTATATATCTGAcggatttaatttatttaaatcatAGATATTTTGGCTACTGTTGTCTTTCAATCCCACTTTAGTCATGTCTTTAAATATGTAGTTGAAGCATGTTTATACAATAGATCCTTTTCTGTAATACATTGTGTAACTGGTCTTGCCTGCTAAAGGTCCCCAAGCGTGGTTAAGAGGGTTGTGTATACCTGAATACCTTTTTACATGGCACAGTATTAATAAATTACAGTCCTGTATTGTAGGTTGTAATTTAGTATGTGTCCTTTACACATTGACATCTTCAAATTTCTGGGACTCCTTCCACACAATAGACCTTTTcgacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtattcaaaaccattaatgatggctgcattccacttaggagaggccctggtattgtgcatgctgactcactgaaacagcttactgggacacttgatggaattgagccattgttaaggttatcactttcagctgtgcttttcctactataacaagtcaacatgtctgctgtgaaaaaggtccatattGAAAATGTTTGAGTCCTGTAACGTCACTGCTGGTGTCAGGCTTTGATTCCAGAGTGTAGTGTTCTGTAAAATGGGAAGCAAGACAAACACCAGAATCCATttgttgtatatatttgtattctgAAAACATGAGTAAAAGTGTCATTTAAATCTGTCAGACCTCCAGTGTGCGTTGACCAcacttttaacaataaaaaaatgccccaaaaaa
>XM_039786608.1
TATTACATCCCATTGATTAGACGCGATACAAACTATCCGCCTCTTGTCGCTGTTGTCTCCTGTGGTGTGCGCTAAAAGCCAGCCAAAAAAGCACTAAAATGGCGCTTACTTCCCAAGGAACAAAGAAAAAAGTTTGCTACTACTATGATGGTGATGTTGGAAATTACTACTATGGTCAGGGGCACCCAATGAAGCCCCACCGAATCCGCATGACTCACAACCTGTTGCTCAACTATGGACTCTACAGAAAAATGGAGATATATCGTCCACACAAAGCCAGCGGAGAAGAGATGACCAAGTATCACAGTGATGATTACATCAAATTCCTGCGTTCAATTCGACCAGACAACATGTCAGAGTACAGCAAACAAATGCAGAGATTTAATGTGGGGGAGGACTGTCCAGTGTTTGATGGTTTATTTGAGTTCTGCCAGCTCTCAGGAGGGGGCTCCGTTGCTGGTGCGGTGAAGTTGAACAAACAGCAGACTGACATTGCTATCAACTGGGCTGGAGGCCTGCATCACGCCAAGAAGTCTGAGGCTTCTGGCTTTTGCTATGTCAATGACATCGTACTGGCTATCCTGGAGTTACTGAAATACCACCAGAGAGTTCTGTACATAGATATTGACATCCATCATGGAGATGGTGTTGAAGAGGCCTTCTACACCACAGAccgtgtcatgacagtgtcctTCCACAAGTATGGAGAGTACTTCCCTGGGACAGGTGACCTGAGGGACATCGGTGCTGGTAAGGGTAAATATTATGCTGTGAATTACCCGCTGAGGGATGGGATTGACGATGAGTCATATGAAGCCATATTCAAACCTATCATGGCCAAGGTGATGGAGATGTACCAACCCAGCGCAGTGGTTCTGCAGTGTGGAGCTGATTCACTGTCAGGAGACAGGCTTGGTTGCTTCAACCTCACCATTAAAGGCCATGCCAAGTGTGTGGAGTACATGAAGAGTTTCAACCTGCCACTGCTAATGCTGGGTGGAGGAGGCTACACCATCCGTAATGTGGCACGCTGCTGGACATATGAGACTGCTGTAGCCCTTGATACCTCCATCCCCAACGAGCTCCCTTACAACGACTACTTTGAGTACTTCGGACCAGACTTCAAGCTTCACATCAGCCCCTCCAACATGACCAATCAGAACACCAATGACTACCTGGAGAAGATCAAGCAGCGCTTGTTTGAGAACTTGCGTATGCTGCCCCACGCCCCGGGAGTCCAGATGCAGGCCATCCCCGAGGATGCCGTACAGGAGGACAGTGGcgatgaggaggaggatgacCCCAACAAACGCATCTCCATCCGTGCTCATGACAAGAGGATAGCGTGTGAGGAGGAGTTCTCTGACTCTGAAGATGAAGGCGAGGGAGGCCGCAGAAACGCAGCCAGCTTCAAGAAAGCCAAGCGAGTCAAAactgaaggagagaaagaggtggaagaaaaggagaagaaagAagcaaaagaagaagagaaggtgccagaggaggagaaaatggACACATCAAAGCCAAAAGAGGAGTCCAAGACACCTTGAGGTCCTCAGCAGCCAATGATGACATTGCAACTGATCAGAacgcatcttttttttttttttggatacaTCATCTTTCCAGGCTGCTGCTGTGGAAATCGGTGAAGAACTGTACCTTTTGTAATGAGACCCCACTCCATCAAAATGGGGGCGGGGGATCTAAATATTTTCTAGGACACCTTTTCAACCTTACCTGTTTATGGACTGAGGTCAGACTGAGTGTTTCGTTTTTTTGaatgctttttcattttttattaatctTTTTATTCTGTGACACTTGCTTTTCCCTTGTGATGCAACTCTGTAAAAATGATTTAGTACATGTATGCTTTTATATATCTGAcggatttaatttatttaaatcatAGATATTTTGGCTACTGTTGTCTTTCAATCCCACTTTAGTCATGTCTTTAAATATGTAGTTGAAGCATGTTTATACAATAGATCCTTTTCTGTAATACATTGTGTAACTGGTCTTGCCTGCTAAAGGTCCCCAAGCGTGGTTAAGAGGGTTGTGTATACCTGAATACCTTTTTACATGGCACAGTATTAATAAATTACAGTCCTGTATTGTAGGTTGTAATTTAGTATGTGTCCTTTACACATTGACATCTTCAAATTTCTGGGACTCCTTCCACACAATAGACCTTTTcgacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtattcaaaaccattaatgatggctgcattccacttaggagaggccctggtattgtgcatgctgactcactgaaacagcttactgggacacttgatggaattgagccattgttaaggttatcactttcagctgtgcttttcctactataacaagtcaacatgtctgctgtgaaaaaggtccatattGAAAATGTTTGAGTCCTGTAACGTCACTGCTGGTGTCAGGCTTTGATTCCAGAGTGTAGTGTTCTGTAAAATGGGAAGCAAGACAAACACCAGAATCCATttgttgtatatatttgtattctgAAAACATGAGTAAAAGTGTCATTTAAATCTGTCAGACCTCCAGTGTGCGTTGACCAcacttttaacaataaaaaaatgccccaaaaaa

Function

symbol description
hdac1 Enables transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within with a positive effect on secondary heart field specification. Acts upstream of or within several processes, including animal organ development; determination of dorsal identity; and nervous system development. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Is expressed in immature eye; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human HDAC1 (histone deacetylase 1).

NR:

description
PREDICTED: probable histone deacetylase 1-B

GO: NA

KEGG:

id description
K06067 HDAC1_2; histone deacetylase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786607.1 True 2664 mRNA 0.44 14 24519641 24526632
XM_039786608.1 False 2646 mRNA 0.44 14 24519641 24526632

Neighbor

gene id symbol gene type direction distance location
zpcx NA coding downstream 4983 24512063 ~ 24514658 (-)
pabpc4 pabpc4 coding downstream 13688 24497837 ~ 24505953 (-)
ppie ppie coding downstream 24060 24491625 ~ 24495581 (-)
gjb10 LOC103359028,LOC104919306,LOC104946722,LOC101068359 coding downstream 28535 24488895 ~ 24491106 (-)
gjb3 LOC104946721 coding downstream 33786 24482913 ~ 24485855 (-)
lck lck coding upstream 655 24527287 ~ 24540160 (-)
fam167b fam167b,LOC105925981 coding upstream 16368 24543000 ~ 24544882 (-)
rhd LOC103370138,LOC104956406,LOC108237237 coding upstream 238492 24765124 ~ 24769680 (-)
LOC120549632 LOC103365837,LOC101071868 coding upstream 553401 25080033 ~ 25085851 (-)
LOC120549779 NA coding upstream 755890 25282522 ~ 25284535 (-)
LOC120549591 NA non-coding downstream 877 24518012 ~ 24518764 (-)
G205702 zbtb8a non-coding downstream 42748 24475935 ~ 24476893 (-)
G205701 NA non-coding downstream 73245 24443819 ~ 24446396 (-)
LOC120549041 NA non-coding downstream 85808 24429974 ~ 24433833 (-)
G205643 NA non-coding downstream 286532 24232642 ~ 24233109 (-)
G205761 LOC104967137 non-coding upstream 42754 24569386 ~ 24575939 (-)
G205781 NA non-coding upstream 72122 24598754 ~ 24600552 (-)
G205818 NA non-coding upstream 256745 24783377 ~ 24785779 (-)
G205853 NA non-coding upstream 542830 25069462 ~ 25069677 (-)
G205854 NA non-coding upstream 543383 25070015 ~ 25070336 (-)
LOC120548654 LOC106573685,LOC106610772 other downstream 808780 23707989 ~ 23710861 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other downstream 1284843 23024161 ~ 23234798 (-)
LOC120549684 NA other downstream 1571831 22944937 ~ 22947810 (-)
G205380 NA other downstream 1581784 22910107 ~ 22937857 (-)
LOC120549283 khdrbs1 other downstream 1736169 22778005 ~ 22783472 (-)
runx3 runx3 other upstream 89286 24615918 ~ 24664770 (-)
rsrp1 NA other upstream 225521 24752153 ~ 24755421 (-)
fndc5a fndc5,LOC108237574 other upstream 317089 24843721 ~ 24877345 (-)
G205845 bsdc1 other upstream 426574 24953206 ~ 24957041 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other upstream 545723 25072355 ~ 25074124 (-)

Expression


Co-expression Network