XLOC_004976 (tvp23b)


Basic Information

Item Value
gene id XLOC_004976
gene name tvp23b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46683114 ~ 46695839 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009728
GTGAGCGTATATGTGTATTGTGTAATAGATAAGATATATTAGTAATGATGTACTGTATGTTTTCTGCTCAGGCGCTATGCAGACAGCTTTAGCAAACCCGGAAGTGACGTGTCGCATATTATAAGCAGCAGCAAGAGCGCAGTAATAATGAGGCGGGAGTCAAACGATGATGACGACGTGTCTTTATTTGACGCTGAGGAGGATTCAGCCACCAGAAAGAACAAAATCAAgCATCCGGTGGCGTCCTTCTTCCATCTGTTTTTCCGGGTCAGTGCCATTCTGGTCTACCTGCTGTGTGGTTTAGTGGGCGGAAGCTTCATTGCCTGCATGGTGACCATCATCCTCCTGCTGTCATGTGACTTCTGGACTGTGAAGaACATCACTGGCCGTCTGATGGTGGGTTTGCGCTGGTGGAATCAGGTGGACGATGATGGAAAAAGTCACTGGGTGTTTGAGTCCAGAAAGGCCAGCGGGAATCAGTCTTCAGCATCTCGGAGCTCAAACTCAGAGTCTCGTATCTTCTGGCTGGGTCTGGTCATCTGTCCCATCATCTGGGTCATCTTTGCTTTCTCTACACTCATCTCCTTCAAGATTAAATGGCTgGCGGTGGTGATTTTGGGTGTGGTGTTACAGGGAGCTAATCTGTACGGATATGTGCGCTGTAAAGTAGGAGCCCGAACAAACCTGAAGAACATGGCAACAAATTACTTCGGAAGGCAGTTTCTGAAACAGGCTTTCACAAAACAAGAGGAGTCTTAAAAAGGAGCAGACCTTGAGAAATCACTCATCAGTgaacttttattatgttattttataaaacagaCTGATATTAAGTGAGCTAAAAGGGTCACTTGGCTGAAttgtggttttttttttccttgtagtGTAACAATCACAACCTGTTAACTAATTCTTTAACATTTATAGATATCTTTaactttata
>TCONS_00009729
CGGAAGTGACGTGTCGCATATTATAAGCAGCAGCAAGAGCGCAGTAATAATGAGGCGGGAGTCAAACGATGATGACGACGTGTCTTTATTTGACGCTGAGGAGGATTCAGCCACCAGAAAGAACAAAATCAAgCATCCGGTGGCGTCCTTCTTCCATCTGTTTTTCCGGGTCAGTGCCATTCTGGTCTACCTGCTGTGTGGTTTAGTGGGCGGAAGCTTCATTGCCTGCATGGTGACCATCATCCTCCTGCTGTCATGTGACTTCTGGACTGTGAAGaACATCACTGGCCGTCTGATGGTGGGTTTGCGCTGGTGGAATCAGGTGGACGATGATGGAAAAAGTCACTGGGTGTTTGAGTCCAGAAAGGCCAGCGGGAATCAGTCTTCAGCATCTCGGAGCTCAAACTCAGAGTCTCGTATCTTCTGGCTGGGTCTGGTCATCTGTCCCATCATCTGGGTCATCTTTGCTTTCTCTACACTCATCTCCTTCAAGATTAAATGGCTggtaagtaatttttttattgcaaactcCATCGTTTTTAAAGTTTCAGTCCCTCCCAATtcacatattaattaattattatgttAATTCACCTCAAGAGTTTTACCAGCAGTAATTATGGCTTCAGATACTTGCAAACTGGTGTTTATGATTCATGCTTTTAAAGATGAATCCTGACCAATCATATACAAAATAAACgttattttttatg

Function

symbol description
tvp23b Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in lens and solid lens vesicle. Orthologous to human TVP23B (trans-golgi network vesicle protein 23 homolog B).

GO:

id name namespace
GO:0009306 protein secretion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-404 Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in lens and solid lens vesicle. Orthologous to human TVP23B (trans-golgi network vesicle protein 23 homolog B).

Ensembl:

ensembl_id ENSDARG00000057060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009728 False 944 mRNA 0.44 7 46683114 46695839
TCONS_00009729 True 713 lncRNA 0.44 5 46683212 46693443

Neighbor

gene id symbol gene type direction distance location
XLOC_004975 trim16 coding upstream 3637 46634736 ~ 46679477 (+)
XLOC_004974 FADS6 coding upstream 51121 46605600 ~ 46631993 (+)
XLOC_004973 CABZ01111725.1 coding upstream 79559 46603441 ~ 46603555 (+)
XLOC_004972 ush1gb coding upstream 84891 46582168 ~ 46598223 (+)
XLOC_004971 hid1b coding upstream 103182 46543572 ~ 46579932 (+)
XLOC_004977 exoc7 coding downstream 1028 46696867 ~ 46739109 (+)
XLOC_004978 plaub coding downstream 44745 46740584 ~ 46766300 (+)
XLOC_004979 vclb coding downstream 96068 46791907 ~ 46835940 (+)
XLOC_004980 adkb coding downstream 146079 46841918 ~ 46868634 (+)
XLOC_004981 hpdl coding downstream 173432 46869271 ~ 46881002 (+)
XLOC_004970 NA non-coding upstream 139925 46542671 ~ 46543189 (+)
XLOC_004963 NA non-coding upstream 451243 46188296 ~ 46231871 (+)
XLOC_004962 NA non-coding upstream 580694 46078647 ~ 46102420 (+)
XLOC_004961 FO904966.2 non-coding upstream 619351 46046268 ~ 46063763 (+)
XLOC_004984 NA non-coding downstream 339882 47035721 ~ 47036420 (+)
XLOC_004991 NA non-coding downstream 884183 47580022 ~ 47580566 (+)
XLOC_004992 NA non-coding downstream 911032 47606871 ~ 47610330 (+)
XLOC_005002 NA non-coding downstream 1633027 48328866 ~ 48330894 (+)
XLOC_005005 NA non-coding downstream 1718688 48414527 ~ 48419991 (+)

Expression


Co-expression Network