LOC120549695 (LOC104963679,LOC104924644,LOC108232949,LOC106952285)


Basic Information

Item Value
gene id LOC120549695
gene name LOC104963679,LOC104924644,LOC108232949,LOC106952285
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22848784 ~ 22862634 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786779.1
GCGTAGTAGAATGAGTAGAATGAATGAGCGGAAAGGGCAGAGCAGCACGACCACGAGAGACTTGACTCAGAGCACTGAGCGGGGCAGTATGAAGCTGTGAAGCGGCTTTTTTCTTTTGACACTGACAAGTGTCAGTCTATgatatatacaaaaatatattaattaatgtatCGTCTTGATAGCACAATGGCACGAGGAGAGGGCGCCGAGCAGTACGCAGCGAGTTTATTGTCAGTCAAACCTATAAATACAGATATCAAGACAGCAAAGccAAATGACCAAAGAaaccgtctgtctgtgtggaaTAAATTGTGCTATGCTATTGGCGGGGCTCCCTACCAGATCACAGGCAGCGCTCTGGGCTTTTtcctccagatctacctgctggaTGTGGCTCAGCTGGATCCCTTCCATGCCTCCATCATCCTGTTTGTGGGCCGGGCCTGGGACGCTGTCACAGACCCCACAGTGGGTTTCCTGGTGAGCCGGAGTAGATGGACCCGCATCGGCCGCATGATGCCCTGGATCCTTTTCTCTACTCCTTTTGCCGTGCTGACTTACTTCCTCATCTGGTACGTGCCTCCTTTTGAGCAGGGGAAGGTCGTCTGGTACCTGATCTTTTACTGCCTCTTCCAGTCAATGCAGACGtGCTTCCACGTGCCATATTCAGCCCTCACCATGTTCATCAGCAACGACCAGAAAGAGAGGGACTCTGCCACTGCTTATCGTATGATGGTGGAGGTGCTGGGCACAGTTCTGGGCACAGCAATCCAGGGACAGATAGTAGGTGGCGACACAAGTTGTCCCACTGAGCCTGATGAACACGACAGCAGAAACTCAACCAACACGTCCATAGTTTCACTGAATGAGACGAAACGAGCTTACTTGATTTCTTCAGGGGTCATCAGCATCATCTACATCTTCTGTGCCACAGTCTTGTTTTTGGGTGTGAAGGAGAAAAAAGAGAGCGGGCGAAAGGTATCCCAGCTCACCTTCTGTCAGGGCCTGTGGCTGGTGATGGGTTACGGACCATACATCAAACTGGTCATCGGCTTCCTCTTCACCTCTCTGGCCTTCATGctaCTGGAGGGAAACTTTGCTCTTTTCATCACCTACGCTCTCGGCCATAGAAAGGACTACCAGAATATTCTCCTGGTCATCATGCTATCTGGGACTGTGACCATCCCGTTTTGGCAGTGGTTTCTGACTCGGTTTGGGAAGAAGAAGGCAGTTTACTTCGGCATCACGTGGGCAGTACCCTTCATGATCCTAATCGTCTGCATCAAGAGCAACCTGACCATTTCTTACTTGGTCTCAGTGGCAGCCGGTGTGAGCGTGGCGGCAGCTTTCCTCCTGCCTTGGTCGATGCTTCCCGATGTAGTGGATGACTTCAAGGTGAAAAACCCAGACATCCATGGTCACGAAGCCCTCTTCTACTCCTACTATGTGTTCTTTATCAAGTTTGCCTCTGGACTATCCCTGGGGGTCTCTACACTCAGTTTGAAatttgCCGGCTATGTGACTGGGAGCTGCTCACAACCCGAGGCGGTCAGTTTAACCCTGAAGGTGCTGGTCTCCCCTGTGCCTGTGGCTCTTATAGCTGTGGGACTGTTGATATTGTGGACCTACCCTATTGATGAAGAAAGGAGGCAGGGCAACCGAAAACTACTGCAGGAAATGCTGGACTCGGAGTCTGAAACTTCAGTGCTTGGGAGCAGCGTGTAGCGGCAGAGGACGAGCCAGCCACCACAGGTGCTTTAACGTGTTTGCACAGGCTGTCGAGGGACACGACCACCAGCAGAGGAGCGACCACAGACCACTGCTGCACAAACACAATCCGCATCAAGTAGCTCCCTACAGTGGATCACGCAAGTTTACGTCGCCCTCTATTGGCTGGCCAGTAGCATTGCGTGTGTGAAGTATTTTCTGTGTCCCAATTAAACTCTATCTGTTAAAACTAGAAAGCATACACAATTTACTAATCTACACAGTCCCGGGTTATTTTGGCAGAACCAAAGTCCCGGGTTCACTTACTGATATACTTTTTCCTCTTTTAGAGGTTTTCTTTCATTGCCTAGCTGGAACACAGCACTGGGATCTGTCCATTTTGGACCTAAATGGGTATCGGTTACTGTACTGGACAGTCAAATCTGACCACCTTATCATTTAAAATGAAGATAAAACCATGTTTGTGTTAACATTCAACAACTACAGCTCCTAGAAGTGTATGGCTCGTGGGAGCTCAGTCATGGAGTTTTACTCAACAAGGAAATccaaagtgattttttttttttttttttttttcaaagatgtGTGATTCATGATTCATTCAACTTGTATGTGGCTGTCTACAGTGTtattgcattgtgggacaaCAGTTTTCATCAACTCCATTTGTACACTACATCCTGAAGTACTAGGTTGGAATTGGGACACAGCTAGTGATTTGTGGTATTGTTTATGAAGTATTTATTTGCTGGTTGACGAGATCTGACTTTTACTCGTTCAGACTGGAGTGTAATGTTACCTTTTGATGTTTACTATGTCTTAGGTCACTTGTGTTTTACTTTCCATTCAGACAGTTCTCTGAAGGAAATAAACTGTATGAACCCTTATTTCGGGTATACCAGCACTATTTCACTAATTGGCGTTGTACGGAGCTGTGCTACAATTTCTGCGTTACATTTTCTGTGTTTCCTGTGGATTATTTCAGAAAGGCAAAAACTTAAAGTGTACTTGAATCTTCTGAAGGGGAAATGCACCTTGTGgtattatgtactgtatgtatgaaacACATCTTTACTAACTAGTTGCAATGAGATTTACTGTTGAACTTGTTACTTGTTTTCTAAAAGGGTTTCCCACCTTTTTGTGCTTTAACATTTCAGCCAATCTCCATCAGGTTTAATAGACATTTCTAAATGTCTTAAGTAATTTCATTTAGCATGTTTTCACTTCCCAAAGGGCAGAGTAACATGCTttatttaactatttatttaaacaaactatttaAGGGGTTATAGGTTTTTCTTATGAAAGCACATGGGTATAATTTATCAACAGTGAATGGTTATTGAGTCATCTGTGATTTTCAAGTCCTGTGAGAAAACATCAAtgatttttctgttttctaagaagaaatATCACAAGTTGCTATACTGTGACAAACATGTTGCTTTTAGTTTTGGGACTCTGAAAAACAGCTGCCAAAAACCTAGTTTTTCTGTTTTAGggagtcctcactttagatggcaTGATTTAACAACATGATCTTATTGGTTAATTTAAGAGAATGTATTTAATGCGTAGTTTATTTGTAATTGCTCTGAATGAACTGGCTGTGGCATATATCTCTTCTTGGTCTTCTTGGCGTTTATATGcagctgtatgtatgtatatatgtaaatacgtttttcttttcaaatttgACATTGAGGAGCAATATATAAATTAGCAAAGACAAATTAATGTGCTGTTAATTTGTCATTTTAAGTTTGTAAATAAAGTTTATCAAA

Function

NR:

description
PREDICTED: sodium-dependent lysophosphatidylcholine symporter 1-B-like

GO: NA

KEGG:

id description
K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786779.1 True 3515 mRNA 0.44 14 22848784 22862634

Neighbor

gene id symbol gene type direction distance location
si:ch211-67f13.7 LOC102776559 coding downstream 2391 22842589 ~ 22846393 (-)
LOC120548820 LOC102776559 coding downstream 13284 22832802 ~ 22835500 (-)
LOC120548822 NA coding downstream 48791 22794601 ~ 22799993 (-)
zbtb8os zbtb8os coding downstream 60201 22785485 ~ 22788583 (-)
tmem39b tmem39b coding downstream 71840 22772888 ~ 22776944 (-)
LOC120549682 NA coding upstream 62243 22924877 ~ 22935375 (-)
LOC120549683 NA coding upstream 65324 22927958 ~ 22933497 (-)
LOC120549679 zdhhc14,LOC104924637 coding upstream 93864 22956498 ~ 23019246 (-)
LOC120549624 kbtbd11 coding upstream 409451 23272085 ~ 23277308 (-)
arhgef10 arhgef10 coding upstream 416832 23279466 ~ 23337117 (-)
G205297 NA non-coding downstream 129372 22705717 ~ 22719412 (-)
G205242 NA non-coding downstream 213322 22635201 ~ 22635462 (-)
G205219 NA non-coding downstream 321698 22524966 ~ 22527086 (-)
G205212 cep170b non-coding downstream 337379 22508455 ~ 22511405 (-)
G205205 NA non-coding downstream 355149 22493283 ~ 22493635 (-)
LOC120548708 NA non-coding upstream 26010 22888644 ~ 22895642 (-)
LOC120549686 NA non-coding upstream 47338 22909972 ~ 22920458 (-)
LOC120549687 NA non-coding upstream 87593 22950227 ~ 22951060 (-)
LOC120548728 NA non-coding upstream 272951 23135585 ~ 23150231 (-)
LOC120548729 NA non-coding upstream 393244 23255878 ~ 23266654 (-)
LOC120549283 khdrbs1 other downstream 65312 22778005 ~ 22783472 (-)
zbtb42 zbtb42,LOC102793331 other downstream 400841 22440729 ~ 22447943 (-)
chrm5a LOC103374637,LOC108232519,LOC106520150 other downstream 917518 21920885 ~ 21931266 (-)
LOC120549141 max,LOC103363129,LOC100701192,LOC101485218,LOC108232653,LOC102777802 other downstream 1091189 21752386 ~ 21757595 (-)
LOC120549379 LOC100705232,LOC102305635,LOC102778868,LOC104921326,LOC101482755 other downstream 1145014 21656220 ~ 21703770 (-)
G205380 NA other upstream 47473 22910107 ~ 22937857 (-)
LOC120549684 NA other upstream 82303 22944937 ~ 22947810 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other upstream 161527 23024161 ~ 23234798 (-)
LOC120548654 LOC106573685,LOC106610772 other upstream 845355 23707989 ~ 23710861 (-)
runx3 runx3 other upstream 1753284 24615918 ~ 24664770 (-)

Expression


Co-expression Network