Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120549825 |
| gene name | afg3l2 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053131.1 |
| NCBI id | CM020928.1 |
| chromosome length | 36057207 |
| location | 32687730 ~ 32690913 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| afg3l2 | Predicted to enable ATP binding activity; peptidase activity; and zinc ion binding activity. Predicted to be involved in mitochondrial protein processing and protein-containing complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of m-AAA complex. Human ortholog(s) of this gene implicated in optic atrophy 12; spastic ataxia; spastic ataxia 5; and spinocerebellar ataxia type 28. Orthologous to human AFG3L2 (AFG3 like matrix AAA peptidase subunit 2). |
| description |
|---|
| PREDICTED: AFG3-like protein 2 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039786993.1 | True | 798 | mRNA | 0.56 | 2 | 32687730 | 32690913 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120549706 | NA | coding | downstream | 1710772 | 30971115 ~ 30976958 (-) |
| LOC120549705 | NA | coding | downstream | 1719650 | 30961020 ~ 30968080 (-) |
| ankrd6a | NA | coding | downstream | 1727437 | 30944479 ~ 30960293 (-) |
| LOC120549749 | LOC103370732,LOC104968329,LOC104928167 | coding | downstream | 1748327 | 30931136 ~ 30939403 (-) |
| LOC120548738 | jkamp | coding | downstream | 1899873 | 30777804 ~ 30787857 (-) |
| LOC120548945 | NA | coding | upstream | 270365 | 32961278 ~ 32964049 (-) |
| foxg1a | foxg1,LOC106934576,LOC103147766,LOC102223528 | coding | upstream | 612838 | 33303751 ~ 33305439 (-) |
| sptbn5 | NA | coding | upstream | 632694 | 33323607 ~ 33460847 (-) |
| LOC120549249 | LOC103353941,LOC101078900 | coding | upstream | 817695 | 33508608 ~ 33524752 (-) |
| coch | coch,LOC102779905 | coding | upstream | 903155 | 33594068 ~ 33623644 (-) |
| G207682 | NA | non-coding | downstream | 38090 | 32646697 ~ 32649640 (-) |
| G207680 | NA | non-coding | downstream | 56317 | 32622841 ~ 32631413 (-) |
| G207675 | NA | non-coding | downstream | 59362 | 32565757 ~ 32628368 (-) |
| G207677 | NA | non-coding | downstream | 78439 | 32590907 ~ 32609291 (-) |
| G207679 | NA | non-coding | downstream | 85718 | 32601227 ~ 32602012 (-) |
| G207688 | NA | non-coding | upstream | 16016 | 32706929 ~ 32707623 (-) |
| G207698 | NA | non-coding | upstream | 58217 | 32749130 ~ 32802824 (-) |
| G207691 | NA | non-coding | upstream | 61926 | 32752839 ~ 32753257 (-) |
| G207687 | NA | non-coding | upstream | 67284 | 32758197 ~ 32821281 (-) |
| G207684 | NA | non-coding | upstream | 99956 | 32790869 ~ 32817393 (-) |
| LOC120549602 | klhl18,LOC102789664 | other | downstream | 5828 | 32673953 ~ 32681902 (-) |
| G207327 | arhgap5 | other | downstream | 707970 | 31975818 ~ 31979760 (-) |
| G207202 | NA | other | downstream | 1504175 | 31183023 ~ 31183555 (-) |
| LOC120549387 | NA | other | downstream | 1984452 | 30681927 ~ 30703278 (-) |
| G206919 | ccdc88c | other | downstream | 2753164 | 29934262 ~ 29934566 (-) |
| LOC120548944 | npas3 | other | upstream | 168646 | 32859559 ~ 32932010 (-) |
| prkd1 | prkd1,LOC107391660 | other | upstream | 303445 | 32994358 ~ 33078319 (-) |
| G207741 | NA | other | upstream | 379348 | 33070261 ~ 33070727 (-) |
| G207742 | NA | other | upstream | 403272 | 33094185 ~ 33149293 (-) |
| G207802 | NA | other | upstream | 800660 | 33491573 ~ 33498532 (-) |
