lck (lck)


Basic Information

Item Value
gene id lck
gene name lck
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24527287 ~ 24540160 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786996.1
CATCAGCACTTCTATCGAGTTAGTTATAATAAGAGAAGCGGATGATTTCATTTTCACACCCGGGCTCCAGGGGTGAAAAACTCACTCATTGCTAAGtagctcttttaaaaaaaagataacaaTTTAACAAAGACTATCCCTATGGCGGCACGTGAAATCTGATATTGTTGGACGCTTGAAGAGACATATATTTCAAGAGAAAAGATGGGATGTAACTGTAGTTCGGACTATTCAGACAGCGAGTGGATTGAGAACCTGGATGAAATCTGCGAACACTGCAACTGCCCCATACCTCCCCAGTCATGCAATCCATACACAGACCAGCTGATTCCATACAATTACCCATCACAGCATTCACCCCCTACATCTCCTTTACCAGACAACCTTGTGGTGGCCATATACAGTTATGAACCCAACCATGATGGTGACCTGGGATTTGAGAAGGGAGACAAACTCAAGATCATCAGCAAGGATGATCCAGAGTGGTATTTGGCGGAGTCTCTCACCACAGGCCAGCAGGGCTACATCCCGCACAACTTTGTTGCAATGACCACAGTGGAGACTGAACCGTGGTTCTTCAAGAACATTTCTAGAAACGAAGCCATGAGGCTCCTGCTCGCTCCTGGGAATACACTGGGCTCCTTCTTGATTCGAGAGAGTGAGACAACCCAAGGGTCATTCGCCCTTTCAATCAGGGACTTGGACCACAACACTGGTGAAGGAGTCAAGCACTACAGAATCCGCAACATGGACAGCGGTGGCTTCTACATCACAGCCAAGATATCCTTCAACTCGCTGAAGGAGCTCGTCCAGCATCACTCACGTGATGCAGATGGGTTGTGCGCAAAGCTGGGGAAGCCGTGCCAGTCGAGGGCACCACAGAAGCCCTGGTGGCAGGATGAGTGGGAGATTCCGCGAGAGTCCCTGAAGCTGCAGCGCAGGCTTGGAGCAGGACAGTTTGGAGAAGTCTGGATGGGTGTCTACAATAATGAAAGAACGGTGGCAATTAAGAACCTGAAGATGGGAACAATGTCGGTGGAAGCCTTCCTGGCAGAAGCCAACATGATGAAGAACTTGCAACATCCACGCCTCGTCCGCCTCTTCGCTGTTGTTACCCAGGAGCCAATCTATATTGTCACAGAGTACATGGAAAATGGTAGCCTAGTGGAGTACCTGAAAACGACAGAGGGAAGCAGTTTGCCCATGAACACTCTGATAGACATGGCGTCTCAGGTGACTGATGGCATGGCTTTCATTGAGGAGAAAAATTACATCCATCGAGACCTGAGAGCAGCCAACATTCTGGTGTCTAACGAACTCATCTGTAAGATTGCCGACTTTGGATTGGCAAGGCTGATTGAAGACAACGAATACACAGCAAGAGAGGGTGCAAAGTTCCCCATCAAATGGACAGCCCCAGAGGCTATTAACTATGGCACATTTTCCATAAAATCCGATGTTTGGTCATTTGGGATCCTCTTGACAGAAATAGTGACATATGGACGCATACCTTACCCTGGTATGTCCAACCCAGAGGTAATCCAGAACCTGGAGCTGGGCTACAGAATGCCGAAGCCAGAAAACTGTCCAGATGGGCTGTATGACGTCATGTGTACGTGTTGGACGGAAAACCCGGAGGACAGGCCCACCTTCGAGTACCTGACGAGCGTTCTGGAGGATTTCTTCACTGCCACAGAGAGGCAGTACCAGGAATAGCCCTGATGGGGCTGAACAACATACAGACTTACAATGAATATACTCAAACTAAAGGCACAGCCTGTGCAGATGGATGctggattttgttttgtttgtttttgaagaGTACACGCCTTGATATTGATAGGGTAGAATTTGAAGTTTTATCAAATAAGAGTACTTTGTTGCTTCAAAATTATTCTGAAGTTGCCTCTTAGATATGATACAATCACATGTGGAACTGTAAACCCAGAAACTCTTGCAACAGCTGGACCACTGCAGAGCCAACAACAGAATGGAGAGTGACTGATCACCATGCTGCTTGAATAGACTGGGAACTGTCTGCTAGCTGAATAAGTAGCTGCTCTCCTGGTGCTCATTATTAAGATGTAAATACTGTCAAAGGGCTTTAGCTGTGTTTTACCTCAGcagtttaataaatgttttatattgttttacttACAGTAAAAAGCTTTACATAGCCTATTTTCTTTGTTGTTACATTGAATAAAGCAGAACCCAT

Function

symbol description
lck Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in T cell differentiation; cell surface receptor signaling pathway; and innate immune response. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytosol. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in T cell; head kidney; lymphocyte; pro-T cell; and thymus. Human ortholog(s) of this gene implicated in immunodeficiency 22. Orthologous to human LCK (LCK proto-oncogene, Src family tyrosine kinase).

NR:

description
tyrosine-protein kinase Lck

GO: NA

KEGG:

id description
K05856 LCK; lymphocyte cell-specific protein tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786996.1 True 2218 mRNA 0.46 13 24527287 24540160

Neighbor

gene id symbol gene type direction distance location
LOC120549589 hdac1,LOC104919311,LOC102207424,LOC103153388,LOC108237416 coding downstream 655 24519641 ~ 24526632 (-)
zpcx NA coding downstream 12629 24512063 ~ 24514658 (-)
pabpc4 pabpc4 coding downstream 21334 24497837 ~ 24505953 (-)
ppie ppie coding downstream 31706 24491625 ~ 24495581 (-)
gjb10 LOC103359028,LOC104919306,LOC104946722,LOC101068359 coding downstream 36181 24488895 ~ 24491106 (-)
fam167b fam167b,LOC105925981 coding upstream 2840 24543000 ~ 24544882 (-)
rhd LOC103370138,LOC104956406,LOC108237237 coding upstream 224964 24765124 ~ 24769680 (-)
LOC120549632 LOC103365837,LOC101071868 coding upstream 539873 25080033 ~ 25085851 (-)
LOC120549779 NA coding upstream 742362 25282522 ~ 25284535 (-)
LOC120549778 NA coding upstream 744431 25284591 ~ 25287060 (-)
LOC120549591 NA non-coding downstream 8523 24518012 ~ 24518764 (-)
G205702 zbtb8a non-coding downstream 50394 24475935 ~ 24476893 (-)
G205701 NA non-coding downstream 80891 24443819 ~ 24446396 (-)
LOC120549041 NA non-coding downstream 93454 24429974 ~ 24433833 (-)
G205643 NA non-coding downstream 294178 24232642 ~ 24233109 (-)
G205761 LOC104967137 non-coding upstream 29226 24569386 ~ 24575939 (-)
G205781 NA non-coding upstream 58594 24598754 ~ 24600552 (-)
G205818 NA non-coding upstream 243217 24783377 ~ 24785779 (-)
G205853 NA non-coding upstream 529302 25069462 ~ 25069677 (-)
G205854 NA non-coding upstream 529855 25070015 ~ 25070336 (-)
LOC120548654 LOC106573685,LOC106610772 other downstream 816426 23707989 ~ 23710861 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other downstream 1292489 23024161 ~ 23234798 (-)
LOC120549684 NA other downstream 1579477 22944937 ~ 22947810 (-)
G205380 NA other downstream 1589430 22910107 ~ 22937857 (-)
LOC120549283 khdrbs1 other downstream 1743815 22778005 ~ 22783472 (-)
runx3 runx3 other upstream 75758 24615918 ~ 24664770 (-)
rsrp1 NA other upstream 211993 24752153 ~ 24755421 (-)
fndc5a fndc5,LOC108237574 other upstream 303561 24843721 ~ 24877345 (-)
G205845 bsdc1 other upstream 413046 24953206 ~ 24957041 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other upstream 532195 25072355 ~ 25074124 (-)

Expression


Co-expression Network