LOC120548836


Basic Information

Item Value
gene id LOC120548836
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24186796 ~ 24197384 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637286.1
GCTTCTTAAGCATCATTTTGCTTTTGCCCCACCAGAAAGGGACAAGTCCAAATGATCTCAATATGACACAATGCTGAAAGGGAGCGGCAATAGGGATCCAACCTTGAATATGATGTGGCCAAGGCAGTCAGTGGGAGCGGGATAAACGGACGCGCCAAGGAGCTGTGAAGAAGGCCCGGCAAAGTGGTTCTTCCTCTCTGGAAGGATGTCAGTTCTCTGTGCCTGGCCATCCCTGAGGACGCTTGATGTCATCTTGTCTACCTGATCATTACACTACCTGCTCTCCTCTACAATGCTGGCCTCTCTCTGCTCCGCCACTTGAAATGCTTGGCTGGCCTCTTCTCTGAAACCATCATGAAATTGTGTGCTAAAACGCTGCAGActgttcctcctctctcctccctccagccAAGTGTGCAGGAGCCAGAAAAAGATTCCTCCACTTGGACGACTGCTGCCCAGTCAAAGGGAAAATGCTCAAAACATCCTTCAGCCACCTGCCACCGCTCACAGCTTTTATTTGAGTTATTGATTTTGGTAGCGTACGACATTGTACAGCAATATTATTAGATTCGATGGACATCTACcaagttgtttaaaaaaagaggtCCTTTTGGTagtgtcacagtaggaaaagcgcatgtgaaaataataaaatgaatgatggctgaattgcATTTGGCTGCTTCGGTTTCAGGGTGCTGGTCATTGTTAACAGTATTAGTAACAGATGTGCCTGTCCTCCTATGACAAGTGAAATGGTCTGCTATGAAATGTACAATAGACTGCAGTGTATAATGTCAATATTGAAAGCAGAAGTCACTGCAAAAATGCACCAAGAACACTGATAATGCAATCAAAATATTGCGTCCATCATCATTCATGAAAATACTGATGTATAAACATTTTCCTCAACTTTAACACACTGCGAGGGACTGCTTTCATCTCATCAAGTGTCTCTTTTATTTGGTTTAAGCTATGTGTGAATGATCCAGATAATAAAGGAATAAAcaacaaatgtaaaaatgatgTACTCTGCATATTGAAAGATAGGTTAATATAAGCTTCACATAAAATTTGGAATACATTTAGTTTCATGTAAGGAGGGTTTTGTCTCCCATCACTTCCATTGAAAGCGAATAAGGAGAGGATCTGTTACTGGCCAATATGAACAGAATCAGAATTAGAATCAGAATATGATTTATTGCCAAACAAGTGACACAAGGAAACAGAAGGAATGATCACAGCAAGCAAAACCTGTTTCAATGTTCATATGCACCTGACTATTGTTTTAAGACAGACTTAAAAAAATTGGAAACTATGCTTTAATGTGTACAATATAAggtcctatttttttttttacacttttactagCAATTATCGTATCTCAGTAAGATTAATAAATAAACTGCATTGTCAGTGAAccttttaaaatatgttcaaacATTTCAATACATTAATGTTAGATTGTCTGAACACGCTGCAGAGTCTCAGCATGGATCTGGTTCACACAGAGTGGAGaggtaacacacacagtaaagaGTGCAGTGCTCTGCTGCTGGACATTAAGCAGTGGAGGGGGAAGTGTCTTGCTCGTGAGCATCTCAGTAGCATTTGCAGAGGAAGGGGGCTCCTTTAATCACAGTATTTCTTTTCCCAGGGGTTCCAAGCTCATCCGGGGATTTGAACCGTTCACAGATGCACTTCTGTTAGAGATGGCTGGCCCAGTTCCAATGCATGCTTAACAATAAAAGTCCTAAAATAACTCTGCTTTTACAGTAATATGCCTGTTGTATTTACTGAAATAGTTTGACAGGGATTATGTACTTCatgtattacatttaaaaaaacacaaatgcattgTGTTTATCTGTTACACTTACAACTATTCTTCATCTCCTAAAGTAACTAACTTACCCTATCTATGTTTCCAATATAGTGACATGCTCTGTAACTCCTACATATATTAATCATCCTGACATCAGATGTTTACTGAATTGAAGTATTAAACTTGAGCAtgagttgtttgtttttgaaatgtatGTACGCCAGGTAATTTAAATGAATACATATCTGATGTATCATAATGAACCAGCATACTGTTGGGTGGAAGGCACACGGCTCAACACAAATTCCACCATTTAATTAGAGTTGGATTTAAACACTGTACTTGGGTAAAGGCAgtaataccacaatgtaaaatgACTTCAaatactatatacagtataacatgtTTGAATTCATTTAAGTGTCACAGGTAAAGGCATTCATTCTGAATTCAATTTCAGAGTGTATCAATGCGCTGCAGCTGTAGGTGTTCCTTTCACCTGTAGGCTTGCTACTGCATTTACTGTGGTTTCAACTACAGTGATTTGTATGTTACATCTTATTCTGCAATAAGTAACTATTAACAACTGCTGATAAATAAAGTGGAATCAAGGAGTGTGCAGTATTTCCCTCTGAAGTGTAGAGAAGTAAAAGCAAGTATCGTACAATTAGCAAGTACATATGTAAATATACTTATTTACAGTTTATTATGCATAggtttttatgtaaataaacctGGAAGTTCTGTTATTTGTGTTACATTATGTAACATTTTGTTGTATTAATTCTTCCTAATGAATTTGTCATCAAGTTGTGATTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637286.1 True 2649 lncRNA 0.38 3 24186796 24197384

Neighbor

gene id symbol gene type direction distance location
pax1a pax1,LOC103359018,LOC101466677,LOC102791619,LOC100700371 coding downstream 55015 24127131 ~ 24131781 (-)
LOC120549070 qpct,LOC100700099 coding downstream 221036 23957775 ~ 23965760 (-)
LOC120549247 cnksr3 coding downstream 231512 23920191 ~ 23955284 (-)
ipcef1 cnksr3 coding downstream 272486 23904803 ~ 23914310 (-)
LOC120549331 tiam2,scaf8 coding downstream 282148 23782980 ~ 23904648 (-)
kiz kiz coding upstream 39635 24237019 ~ 24262525 (-)
insm1b insm1,LOC103359023,LOC100710315 coding upstream 251056 24448440 ~ 24451277 (-)
gjb3 LOC104946721 coding upstream 285529 24482913 ~ 24485855 (-)
gjb10 LOC103359028,LOC104919306,LOC104946722,LOC101068359 coding upstream 291511 24488895 ~ 24491106 (-)
ppie ppie coding upstream 294241 24491625 ~ 24495581 (-)
G205493 NA non-coding downstream 612784 23536946 ~ 23574012 (-)
G205492 NA non-coding downstream 626604 23528223 ~ 23560192 (-)
G205494 LOC102076813 non-coding downstream 651233 23529490 ~ 23535563 (-)
G205489 NA non-coding downstream 662482 23518903 ~ 23524314 (-)
LOC120548729 NA non-coding downstream 920142 23255878 ~ 23266654 (-)
G205643 NA non-coding upstream 35258 24232642 ~ 24233109 (-)
LOC120549041 NA non-coding upstream 232590 24429974 ~ 24433833 (-)
G205701 NA non-coding upstream 246435 24443819 ~ 24446396 (-)
G205702 zbtb8a non-coding upstream 278551 24475935 ~ 24476893 (-)
LOC120549591 NA non-coding upstream 320628 24518012 ~ 24518764 (-)
LOC120548654 LOC106573685,LOC106610772 other downstream 475935 23707989 ~ 23710861 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other downstream 951998 23024161 ~ 23234798 (-)
LOC120549684 NA other downstream 1238986 22944937 ~ 22947810 (-)
G205380 NA other downstream 1248939 22910107 ~ 22937857 (-)
LOC120549283 khdrbs1 other downstream 1403324 22778005 ~ 22783472 (-)
runx3 runx3 other upstream 418534 24615918 ~ 24664770 (-)
rsrp1 NA other upstream 554769 24752153 ~ 24755421 (-)
fndc5a fndc5,LOC108237574 other upstream 646337 24843721 ~ 24877345 (-)
G205845 bsdc1 other upstream 755822 24953206 ~ 24957041 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other upstream 874971 25072355 ~ 25074124 (-)

Expression


Co-expression Network