LOC120549041


Basic Information

Item Value
gene id LOC120549041
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24429974 ~ 24433833 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005637307.1
GAGCTGAGATACGCTGGACTGGGTCGAGAGGCTCTGGTCTGGGTTAGGTAGATAGGATGAGACAGTGACTGGGCAGGGGGCCTGCTGTGGGCACATGCCGCCACAACAGGGGCCAAGGCAGCCATGACCAATGGTTTTGAGAGAACCATGGCAAAGCGGGGGTGACGGGCACCTGAGCCGGGAGGTACCAGAGGGTACGATGGCCAAGCTGCTCACAGGGACAGAGATGGACAGAGGGCAGACTGAGACAAAGGATAAGGGACCTGTCCTGAAAATGCCTGTCCACTGGGATCCATTTTGTGCTGTGTGTAACCCCACCCAGTGCATAGGGACACgtacacatgctcacacatagGCGTTTGTGCATAAGTAGGCACAACACACATTCATACCCTCCACCCACACACTGTTCCCCAAAAGAGCCTATGTTGACCTCTGaactggggtgtgtgtgtctctctctctctctctctctctctctctcagcaggaTCTTGATCATCCACCACTCCGTCCTTGTGTTCCTCAGTCCCTCTGCTGAAAAAAGGCCTCACGCCACCACTGGCCTCGGAAACACACAACATATTTTGAACACACACAGCCTTTAAACACACAGCCAGCAGGGACATTCACGGCTTCAGAAAGGACGCCTTAACCGAAAGGTACTCTGAATGTATGGATGCTGGAATGTTTATCGCTTCCCACGTGTGCTCGTGCTCATATATGTGCGTCCTTGTGCTTGTGGTAGCAGTGTATGAGATACAAAACAGAACAGCAAAACTCAATTCATATGGCAATAATGTTTTGAAGAAATACCTCATTTACTTAGGTTTGCTAAAGGACTACATCATGATTCCTTCATTGTGAAATGCAATATGTTTCAAACCATCAAGACTCTTTCTAGAGGTGTGGCCAATCTCAGTAAATGCCATAAGAAGCTTGGTCAGGAGAAGATAAACCCAATGACTTCAATGATTCTGAGAGCATGATGCGACAACAAAATAATTTGGTCTGAATGCCAAGTGAACATTGGTGCTATTGTGTACTATCAGTGCTATAAAGATAAGGAATACCATCCCCACAGTGAATCGCATTGGTTGCAGCATCATGCTGTAGGCACGGCTGTCAGCAGCAGGGACTGGGAGACTGGTCAAGACTAGAGTGGGAGCAGGCCAAGTGTCCTTGAGTAGCCCTGCCAAAATCCCAGTGTTGTGCTTTATTTgtacaaaacaataaaagattGTGTGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005637307.1 True 1250 lncRNA 0.48 2 24429974 24433833

Neighbor

gene id symbol gene type direction distance location
kiz kiz coding downstream 167449 24237019 ~ 24262525 (-)
pax1a pax1,LOC103359018,LOC101466677,LOC102791619,LOC100700371 coding downstream 298193 24127131 ~ 24131781 (-)
LOC120549070 qpct,LOC100700099 coding downstream 464214 23957775 ~ 23965760 (-)
LOC120549247 cnksr3 coding downstream 474690 23920191 ~ 23955284 (-)
ipcef1 cnksr3 coding downstream 515664 23904803 ~ 23914310 (-)
insm1b insm1,LOC103359023,LOC100710315 coding upstream 14607 24448440 ~ 24451277 (-)
gjb3 LOC104946721 coding upstream 49080 24482913 ~ 24485855 (-)
gjb10 LOC103359028,LOC104919306,LOC104946722,LOC101068359 coding upstream 55062 24488895 ~ 24491106 (-)
ppie ppie coding upstream 57792 24491625 ~ 24495581 (-)
pabpc4 pabpc4 coding upstream 64004 24497837 ~ 24505953 (-)
G205643 NA non-coding downstream 196865 24232642 ~ 24233109 (-)
LOC120548836 NA non-coding downstream 232590 24186796 ~ 24197384 (-)
G205493 NA non-coding downstream 855962 23536946 ~ 23574012 (-)
G205492 NA non-coding downstream 869782 23528223 ~ 23560192 (-)
G205494 LOC102076813 non-coding downstream 894411 23529490 ~ 23535563 (-)
G205701 NA non-coding upstream 9986 24443819 ~ 24446396 (-)
G205702 zbtb8a non-coding upstream 42102 24475935 ~ 24476893 (-)
LOC120549591 NA non-coding upstream 84179 24518012 ~ 24518764 (-)
G205761 LOC104967137 non-coding upstream 135553 24569386 ~ 24575939 (-)
G205781 NA non-coding upstream 164921 24598754 ~ 24600552 (-)
LOC120548654 LOC106573685,LOC106610772 other downstream 719113 23707989 ~ 23710861 (-)
arid1b LOC103368034,LOC102292653,LOC101481705,LOC102196556 other downstream 1195176 23024161 ~ 23234798 (-)
LOC120549684 NA other downstream 1482164 22944937 ~ 22947810 (-)
G205380 NA other downstream 1492117 22910107 ~ 22937857 (-)
LOC120549283 khdrbs1 other downstream 1646502 22778005 ~ 22783472 (-)
runx3 runx3 other upstream 182085 24615918 ~ 24664770 (-)
rsrp1 NA other upstream 318320 24752153 ~ 24755421 (-)
fndc5a fndc5,LOC108237574 other upstream 409888 24843721 ~ 24877345 (-)
G205845 bsdc1 other upstream 519373 24953206 ~ 24957041 (-)
G205866 marcksl1,LOC102222432,LOC104961040,LOC106610887,LOC105925978,LOC102786723 other upstream 638522 25072355 ~ 25074124 (-)

Expression


Co-expression Network