XLOC_004981 (hpdl)


Basic Information

Item Value
gene id XLOC_004981
gene name hpdl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46869271 ~ 46881002 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009744
CTGAATGACGTCATCCCAAACATGGCGGCCTACTTGAGCCGGTTGCACCACATTTCCCTGCAGGTTTCAAACGTGGATAAAGTCGCTCACGAGCTCGTGTCGCGGTTCCAGTTTAACGTGTTCGCGGCGCGACGGACAGACCGGGCGAAGCAGCTCGCGCTCCGCAGAGGATCCGCGGTGTTCGTGGTGAACGAGAGACCGAGTCCGAGTGACTGCGGCGCTGTCAGAGATCACCGGGACGCGGGTTGTGTGTTCGGGACTCATGAGCACTACCCGGTGGACACCGTTAGTAACGTGTGCTTCGAGGTGACCGATGTACCGAGCGCGAGCCGGGCGCTCCGGGATCAGGATGGGTGTGAGTTCCTCCAGCCGCCCGCGGAGCTTCAGGATGATTGTGGCCGGGTCACCTTCTCCATCGTGCGCTCCCCGGTGGGTAACGTGTGCCACACACTCATCGACAGCTCCCGGTACCAGGGCCCCTTCCTGCCCGGTTTCCGTGAGGTGAGCTCAGGCTGTCAGGGTGCAGACCGCTCCCGCTGTCCCATCACTCACTTCGACCACATCACTTACGCCTGTCCGCGGAGCAGTACTGTACACATCACCAACTGGTATCGGAGGAACTTTGGCTTCCAGAGGTTCTTCATTGACAGAAATGAGGATGTGGACGAGGGATACGTGTTGAACCATGATGGGATCGGCCTGCGTTTGACAGCTATGGAATACTGGAAATGCAGTGAGTCTGGAATAAAACTGCCCTTTAAGGATGAAAAGGAGCCGGACTGCAAGTTTGTGATCGCAGAGTCTCTCCCTGAGCAAGgCAGGAATCAGGTGGACACGTTTCTGGATGAGCACCGAGGAGCAGGAATCCAGCACATCGGCCTGTACACCGAGGACATCGTGAAAACTGCTCAAACTCTGAGTCAGGCTGGAGTTCAGTTCTTCTCTCCTCCTCCGGCGTACTACACTGAGGTGGGAAAGCAGCAAGAGATGTTGGATGCAGGTTATGATCCTCAGACACTGAGTCGATATGGGATTCTGCTGGACACTGACATCCAGAcggacacagacagacagaccacaGACGGCCAACGGCACCTCCTGCAGGTCTTCACCAAGCCGGTGTTTGCAGAGGACACGTTTTTCCTGGAGCTGATCGAGCGCAGAGGAGCAACAGGCTTCGGCGAGGGGAACATCCGAGCGCTCTGGAGATCCGTTCAGGCCTATATGGAGAACGGAGAACATCAGGAGAGGCAGAGCAACAACCAGCAGAGCAAACAGTGCTGACTGAGCATCTGCaccacacgcacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacacacacacacacacttatagagAATACACTGTAGGAAACAACTGTTAATGAACAGCGTCCGTATTTAGTGATTCaccagtgttttctgtttatttacagttgagaattgcattatgggatgttgatctctgctctgtccacttttgatgtcggaaattcagctctacagtttaacaaagtgactattATTGACagtttattagttttatataatataatttatcagAAATATAGAGTAATAAGTCTAAAAAATAACAGAATATGTGCTGCATTTTgttacaaggtgtttgtagtgtaatatacaacaccaacacagatgatatagcactttaaactattaaaaatgtaaacaaaagtcactttttccaacttttcaaggtttAAAATTATTGGagaaaagatcaagatcccataatgctcttcaaaagcagaaatacagAATCCCAAAATACAGACATCTACTAATGTATGGATTACTTTCTTACAGACACTAGGataagatctacctgagctttaGATTTACTGACTGCAGCACCTTTGGGAACATTTGTGTGAATAGAAAGTGATTTTGTCCTCTGTTCAGGACTTTTAGCATATTTGACTGTAACAGTCTTCAGTTCAGGCACTTCTAAAATCATCGGCTTTATATtgaatgtgatttatttattcaataaccATGATAATAATGATATTCCCTAACTGTGATGGACTGTAATTTCATGTAAACCCATTTGATGTGACGTTTACAGTGAAATACATGCaggttttgttaaaataaatggaaacctCTAAACAACA

Function

symbol description
hpdl Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within aromatic amino acid family metabolic process. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human HPDL (4-hydroxyphenylpyruvate dioxygenase like).

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-50 Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within aromatic amino acid family metabolic process. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human HPDL (4-hydroxyphenylpyruvate dioxygenase like).

Ensembl:

ensembl_id ENSDARG00000101010

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009744 True 2182 mRNA 0.48 6 46869271 46881002

Neighbor

gene id symbol gene type direction distance location
XLOC_004980 adkb coding upstream 637 46841918 ~ 46868634 (+)
XLOC_004979 vclb coding upstream 33331 46791907 ~ 46835940 (+)
XLOC_004978 plaub coding upstream 102971 46740584 ~ 46766300 (+)
XLOC_004977 exoc7 coding upstream 130162 46696867 ~ 46739109 (+)
XLOC_004976 tvp23b coding upstream 173432 46683114 ~ 46695839 (+)
XLOC_004982 fam53b coding downstream 2783 46883785 ~ 46937956 (+)
XLOC_004983 oat coding downstream 79577 46960579 ~ 47042081 (+)
XLOC_004984 NA coding downstream 154719 47035721 ~ 47036420 (+)
XLOC_004985 zranb1a coding downstream 163705 47044707 ~ 47072007 (+)
XLOC_004986 mtr coding downstream 200781 47081783 ~ 47115440 (+)
XLOC_004973 CABZ01111725.1 non-coding upstream 265716 46603441 ~ 46603555 (+)
XLOC_004970 NA non-coding upstream 326082 46542671 ~ 46543189 (+)
XLOC_004963 NA non-coding upstream 637400 46188296 ~ 46231871 (+)
XLOC_004962 NA non-coding upstream 766851 46078647 ~ 46102420 (+)
XLOC_004961 FO904966.2 non-coding upstream 805508 46046268 ~ 46063763 (+)
XLOC_004991 NA non-coding downstream 699020 47580022 ~ 47580566 (+)
XLOC_004992 NA non-coding downstream 725869 47606871 ~ 47610330 (+)
XLOC_005002 NA non-coding downstream 1447864 48328866 ~ 48330894 (+)
XLOC_005005 NA non-coding downstream 1533525 48414527 ~ 48419991 (+)

Expression


Co-expression Network