XLOC_004982 (fam53b)


Basic Information

Item Value
gene id XLOC_004982
gene name fam53b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46883785 ~ 46937956 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009745
CGCGCTCGTGCGGCGGCGGTAGCGGGAGATGAGCGGTGGACGCGCGCGGGGATGAGGATGATCTGAACGGTCGTGTTTACCGGAGACCCGCCGGCCGCTGTTCCgtgaagGGGTTCGGTGTGATGTCGGATCGGCTATGAGCTTCTCTACAACTGTCCTGCACTGGAATGGACCGTGGCAAAGATGTGTGTTGCCATGGTAATTATTCACACTAAAACACTGGAAAAGAAGGCGGTTGACGATGTAACATCCGAAGCGTCTCTGCAGCCGCAGGAGCCGCTGACCATGAGCCAGGGGACAGCTCTGTTCTCCTGTGGAATCATGGACTCTGGGCGCTGGGCAGATGTTGGGAGTGTGTGTGGCGTCCAGCAGCGGCCTGTGGGCTCCAGTCTGGAGAGCCTGTGGGACAGCATGCGTGAGGCGGGCGCCACTGGCGGCATCAGCGGGTTACTGCGGGATCTGAGTCTGAGCGAAGCGTCTCCTGCCAGTGCTGCGCCGCCCAGCAAACGCCAGTGCCGCTCGCTGTCCTGCTCGGATGAGCTGGGCTGCCGCTCATCCTGGCGTCCGCAGGGTTCGCGCGTCTGGACAACGGTGGAAAAGCGGCGCTGCCACAGTGGAGGGAGCGTCCAGAGAGGAGTCTTCAATCCATCAGGCTTTCCTGCAATGCAGCGCAGCTCCAGCTTCAGTCTGCCGGCGCACAGCAGTCATCTGGAGCCCTTCACTCACGGTTTCCCATTCCAGGCATTCTCCGAGTGTCCGCAGACGCCGCAGACGCTGTACCGTTCACATGAGCAGATCTGCCCGGCGGAGGCCAGCTCCCCTGAATCCACCCCAGAGCTCCAGCGCCGCAGCGGGCAGAGCGGACTCGCACGCAGCCGATCACAGCCCTGCGTACACAACCATCAGAAGATCGGCGTCAAGCGCAGGAGACCGGCCGACTCGCACAAACAGAGGCCCTCGCTGGACCTGCTCAAGATGACACAGAAGCTGCAGGATTTTCACAGTCTCAGCTGTCCAGGATTCAGCGGCGACGACAAAACTCTGCCGTCCAGCAGCCCGGCACTCCTCAACGACACATGTGAGCGTGCTCAGAATGACAGCTCAGCGGATGCCCccatccaccaatcagagagcagcTCAGAGGACGCCCTCATCCACCAATCAGATAGCAGCTCAGCGGACGCCCTCATCCACCAATCAGAAAGCAGCAGGCCCGCAGGAAAGGAGCGCGAATGCTTGTGGGCGGGGCTTTGTAGCAGAAGGGGCCGGGACTTATTCCAGCTGGGCGGAGAACTGGATATCGAGCAGATTGAGAGGAACTGAGAAGCATTTCTTGTTGGATTATTATGGGATGTACGCTTCAGTAAGTGATGCAGGACACATGTAATCGACTCAGGGTGAAGCACATGGAGGACGTGATCCGAGCTCCGTGTGGCGCAAGAGAACACGCACACATTTAGATTAGCAGAGCCATTTGACATTATAAAAAAAGAGATACGACTCTgacgttcacacacacagacatacacacacgttAAAGGGCTTCAGATGTGTAACAGTAGTAATATCAGGTAATTCAGTTCCTCACTGGTGAAAACAAAGCTATTAGatctatttttgtctttttacatTGAATAACTACAGAAGTAAATGTACTTATTTCTCTACAATAAACAGCATTGTAATGTGTTTGTAAGAGC
>TCONS_00009746
GATCTGAACGGTCGTGTTTACCGGAGACCCGCCGGCCGCTGTTCCgtgaagGGGTTCGGTGTGATGTCGGATCGGCTATGAGCTTCTCTACAACTGTCCTGCACTGGAATGGACCGTGGCAAAGATGTGTGTTGCCATGGTAATTATTCACACTAAAACACTGGAAAAGAAGGCGGTTGACGATGTAACATCCGAAGCGTCTCTGCAGCCGACTCTGGGCGCTGGGCAGATGTTGGGAGTGTGTGTGGCGTCCAGCAGCGGCCTGTGGGCTCCAGTCTGGAGAGCCTGTGGGACAGCATGCGTGAGGCGGGCGCCACTGGCGGCATCAGCGGGTTACTGCGGGATCTGAGTCTGAGCGAAGCGTCTCCTGCCAGTGCTGCGCCGCCCAGCAAACGCCAGTGCCGCTCGCTGTCCTGCTCGGATGAGCTGGGCTGCCGCTCATCCTGGCGTCCGCAGGGTTCGCGCGTCTGGACAACGGTGGAAAAGCGGCGCTGCCACAGTGGAGGGAGCGTCCAGAGAGGAGTCTTCAATCCATCAGGCTTTCCTGCAATGCAGCGCAGCTCCAGCTTCAGTCTGCCGGCGCACAGCAGTCATCTGGAGCCCTTCACTCACGGTTTCCCATTCCAGGCATTCTCCGAGTGTCCGCAGACGCCGCAGACGCTGTACCGTTCACATGAGCAGATCTGCCCGGCGGAGGCCAGCTCCCCTGAATCCACCCCAGAGCTCCAGCGCCGCAGCGGGCAGAGCGGACTCGCACGCAGCCGATCACAGCCCTGCGTACACAACCATCAGAAGATCGGCGTCAAGCGCAGGAGACCGGCCGACTCGCACAAACAGAGGCCCTCGCTGGACCTGCTCAAGATGACACAGAAGCTGCAGGATTTTCACAGTCTCAGCTGTCCAGGATTCAGCGGCGACGACAAAACTCTGCCGTCCAGCAGCCCGGCACTCCTCAACGACACATGTGAGCGTGCTCAGAATGACAGCTCAGCGGATGCCCccatccaccaatcagagagcagcTCAGAGGACGCCCTCATCCACCAATCAGATAGCAGCTCAGCGGACGCCCTCATCCACCAATCAGAAAGCAGCAGGCCCGCAGGAAAGGAGCGCGAATGCTTGTGGGCGGGGCTTTGTAGCAGAAGGGGCCGGGACTTATTCCAGCTGGGCGGAGAACTGGATATCGAGCAGATTGAGAGGAACTGAGAAGCATTTCTTGTTGGATTATTATGGGATGTACGCTTCAGTAAGTGATGCAGGACACATGTAATCGACTCAGGGTGAAGCACATGGAGGACGTGATCCGAGCTCCGTGTGGCGCAAGAGAACACGCACACATTTAGATTAGCAGAGCCATTTGACATTATAAAAAAAGAGATACGACTCTgacgttcacacacacagacatacacacacgttAAAGGGCTTCAGATGTGTAACAGTAGTAATATCAGGTAATTCAGTTCCTCACTGGTGAAAACAAAGCTATTAGatctatttttgtctttttacatTGAATAACTACAGAAGTAAATGTACTTATTTCTCTACAATAAACAGCATTGTAATGTGTTTGTAAGAG
>TCONS_00009747
TCCTGCACTGGAATGGACCGTGGCAAAGATGTGTGTTGCCATGGTAATTATTCACACTAAAACACTGGAAAAGAAGGCGCGCGAATGCTTGTGGGCGGGGCTTTGTAGCAGAAGGGGCCGGGACTTATTCCAGCTGGGCGGAGAACTGGATATCGAGCAGATTGAGAGGAACTGAGAAGCATTTCTTGTTGGATTATTATGGGATGTACGCTTCAGTAAGTGATGCAGGACACATGTAATCGACTCAGGGTGAAGCACATGGAGGACGTGATCCGAGCTCCGTGTGGCGCAAGAGAACACGCACACATTTAGATTAGCAGAGCCATTTGACATTATAAAAAAAGAGATACGACTCTgacgttcacacacacagacatacacacacgttAAAGGGCTTCAGATGTGTAACAGTAGTAATATCAGGTAATTCAGTTCCTCACTGGTGAAAACAAAGCTATTAGatctatttttgtctttttacatTGAATAACTACAGAAGTAAATGTACTTATTTCTCTACAATAAACAGCATTGTAATGTGT

Function

symbol description
fam53b Acts upstream of or within several processes, including axon extension; fin regeneration; and protein import into nucleus. Located in nucleus. Is expressed in Rohon-Beard neurons; head; regenerating fin; trigeminal sensory neurons; and trunk. Orthologous to human FAM53B (family with sequence similarity 53 member B).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0031101 fin regeneration biological_process
GO:0048675 axon extension biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2495 Acts upstream of or within several processes, including axon extension; fin regeneration; and protein import into nucleus. Located in nucleus. Is expressed in Rohon-Beard neurons; head; regenerating fin; trigeminal sensory neurons; and trunk. Orthologous to human FAM53B (family with sequence similarity 53 member B).

Ensembl:

ensembl_id ENSDARG00000016156

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009745 False 1700 mRNA 0.56 5 46883785 46937956
TCONS_00009746 False 1585 nonsense_mediated_decay 0.55 4 46883844 46937955
TCONS_00009747 True 542 processed_transcript 0.43 2 46915371 46937946

Neighbor

gene id symbol gene type direction distance location
XLOC_004981 hpdl coding upstream 2783 46869271 ~ 46881002 (+)
XLOC_004980 adkb coding upstream 15151 46841918 ~ 46868634 (+)
XLOC_004979 vclb coding upstream 47845 46791907 ~ 46835940 (+)
XLOC_004978 plaub coding upstream 117485 46740584 ~ 46766300 (+)
XLOC_004977 exoc7 coding upstream 144676 46696867 ~ 46739109 (+)
XLOC_004983 oat coding downstream 22623 46960579 ~ 47042081 (+)
XLOC_004984 NA coding downstream 97765 47035721 ~ 47036420 (+)
XLOC_004985 zranb1a coding downstream 106751 47044707 ~ 47072007 (+)
XLOC_004986 mtr coding downstream 143827 47081783 ~ 47115440 (+)
XLOC_004987 CABZ01088982.1 coding downstream 184148 47122104 ~ 47123266 (+)
XLOC_004973 CABZ01111725.1 non-coding upstream 280230 46603441 ~ 46603555 (+)
XLOC_004970 NA non-coding upstream 340596 46542671 ~ 46543189 (+)
XLOC_004963 NA non-coding upstream 651914 46188296 ~ 46231871 (+)
XLOC_004962 NA non-coding upstream 781365 46078647 ~ 46102420 (+)
XLOC_004961 FO904966.2 non-coding upstream 820022 46046268 ~ 46063763 (+)
XLOC_004991 NA non-coding downstream 642066 47580022 ~ 47580566 (+)
XLOC_004992 NA non-coding downstream 668915 47606871 ~ 47610330 (+)
XLOC_005002 NA non-coding downstream 1390910 48328866 ~ 48330894 (+)
XLOC_005005 NA non-coding downstream 1476571 48414527 ~ 48419991 (+)

Expression


Co-expression Network