trnas-gcu_19


Basic Information

Item Value
gene id trnas-gcu_19
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 25076783 ~ 25076864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1160
GACGaggtggccgagtggttaaggcgatggactGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccatcctcgtcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1160 True 82 tRNA 0.59 1 25076783 25076864

Neighbor

gene id symbol gene type direction distance location
marcksl1a marcksl1,LOC104961040,LOC102222432,LOC106610887,LOC105925978,LOC102786723 coding upstream 1719 25072108 ~ 25075064 (+)
bsdc1 bsdc1,LOC102787231 coding upstream 119736 24948100 ~ 24957047 (+)
olig4 LOC104932724,LOC100704423,LOC103365841,LOC101482078,LOC108245085,LOC102201143 coding upstream 133147 24942345 ~ 24943636 (+)
LOC120549086 NA coding upstream 234023 24835919 ~ 24842760 (+)
ldlrap1b ldlrap1 coding upstream 252850 24789534 ~ 24823933 (+)
LOC120549633 LOC104932647,LOC101063778,LOC103365838,LOC100691808 coding downstream 11426 25088290 ~ 25093995 (+)
syt14a syt14 coding downstream 86520 25163384 ~ 25212902 (+)
LOC120549785 sertad4 coding downstream 138225 25215089 ~ 25235741 (+)
LOC120549742 NA coding downstream 212928 25289792 ~ 25309867 (+)
LOC120549743 NA coding downstream 269299 25346163 ~ 25363785 (+)
G205851 NA non-coding upstream 40833 25035735 ~ 25035950 (+)
G205847 NA non-coding upstream 84816 24991619 ~ 24991967 (+)
LOC120549090 NA non-coding upstream 157581 24849979 ~ 24919202 (+)
G205786 NA non-coding upstream 310654 24757323 ~ 24766129 (+)
G205674 NA non-coding upstream 598408 24478020 ~ 24478375 (+)
G205911 NA non-coding downstream 189957 25266821 ~ 25267027 (+)
G205900 NA non-coding downstream 191341 25268205 ~ 25339320 (+)
LOC120549746 NA non-coding downstream 254944 25331808 ~ 25333018 (+)
G205986 NA non-coding downstream 324241 25401105 ~ 25413681 (+)
G206002 NA non-coding downstream 431836 25508700 ~ 25511131 (+)
mgst3b LOC106536548,LOC108237254,LOC107096417,LOC100690646 other upstream 317285 24754217 ~ 24759498 (+)
ralgapa2 ralgapa2 other upstream 629421 24329113 ~ 24447362 (+)
si:ch211-195o20.7 LOC102076813 other upstream 1524201 23530908 ~ 23552582 (+)
G205294 NA other upstream 2230375 22833987 ~ 22846408 (+)
srp14 srp14 other upstream 2548034 22525155 ~ 22528749 (+)
LOC120549173 LOC103365836,LOC101483368 other downstream 20302 25097166 ~ 25149128 (+)
LOC120549233 LOC103365834,LOC101066181,LOC100705758,LOC102786033,LOC101484046 other downstream 72587 25149451 ~ 25180207 (+)
LOC120549312 fbxo33,LOC102800092 other downstream 1738611 26815475 ~ 26832435 (+)
G206314 NA other downstream 1997743 27074607 ~ 27076498 (+)
mrpl33 NA other downstream 3455806 28532670 ~ 28535054 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnas-gcu-266 NA coding NC_048593.1 CM023247.2 34546304 ~ 34546385 (-)
striped catfish (Pangasianodon hypophthalmus) trnas-gcu_22 NA non-coding NC_047613.1 CM018559.1 14401394 ~ 14401475 (+)
striped catfish (Pangasianodon hypophthalmus) trnas-gcu_6 NA coding NC_047611.1 CM018557.1 1097798 ~ 1097879 (-)
tiger barb (Puntius tetrazona) trnas-gcu_111 NA coding NW_025048651.1 JAEQBD010000996.1 133530 ~ 133611 (-)
mexican tetra (Astyanax mexicanus) trnas-gcu_6 NA misc NC_035917.1 CM008320.1 14091509 ~ 14091590 (-)
mexican tetra (Astyanax mexicanus) trnas-gcu_22 NA coding NW_019172828.1 APWO02000046.1 2285079 ~ 2285159 (-)