LOC120551434 (LOC101484734,LOC101161619,LOC103361136)


Basic Information

Item Value
gene id LOC120551434
gene name LOC101484734,LOC101161619,LOC103361136
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 584120 ~ 647222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU282850
CACAACGGAATGAAGTTCTCCACCTTTGACAAAGACCAGGACACCTGGCATGGGAACTGTGCCAGATCATTCCTGGGGGCGTTCTGGTACAACGGCTGTCACTATGCAAATCCAAACGGTGTTTATCATTGGGGAGCTGACAGCACTCTCTTTGCTGTTGGAGTGAATTGGTTTCATTGGAAAGGTCATAACTACTCCCTGAAGACCATCAGCATGAAGGTCCGTCCTGTGCTGTAGTTCTCCAGGACCAACGTCCAGCAGAATATCAGCTCATCTCTTGtgatttatttctctttctctcattaaGCATTTCATCTTACAACAGGTCTTATTTTCCTGAAACTGGGCACCAGCACAAGAAAACCAACTGACGTTTGTAAGTCTTGTTACCGTCTGTGGTGGTGTAAAGTAGAGCtgcacaaaatgagaaaaatatgcgATAAGTTGTTGACTATGGCGATAACAATATCccttgcaataaataaacagatattcaagtgttctcagttctacTGCTCAGTACTctactaaaatacaacaaacaataatttccaacattcttttattgaacaaattgaacattgaaattAATATAAACGGCAGCAAAATAATGAAAGttacattttactttacttttaacaTGATGCAGCCTTTAGCGACGTGTTTATTGCGCAAGCGatagcgatttaaaaaaaaaaatattgtgcagccctagtttaaggCTGTCGCAGCTCGCTGCAACGTGGAAGAAAAGTCAGATGTGTCTCCAGTTGGGCGGCTGCAGCAGGAAAGTAGGGCCCATAATCTTTAAATGGAAACACATACATAGTCTGATCGGGTGTTAATCACTGCATGAACGGCTAACACAAGTCTAAAAGAGGAAAAAGGTTATAAAATGAAACCATCTTTGTAGTTCAGGACAGTCAGTTGATGTTTGGTGGAGGTTTGAAACTCTAATGTGAATCTTTATCTGCTGTACGGTGACAATAAATAAGAAGCTGAGCATTAA
>XM_039788865.1
ATGACATCTTTTCTGTTCCAGCTGGTTTCAGTCTTTCTCCTCCTGGCTCCACTGTTGGCCAGCTGCCAGCAGCTTCTACAACCGGTAGACTGTAGTGCCATCTATCAGCAAGACAAAAGCAAACCCAGTGGAGTGTACACCATCTATCCCGCCGGAGAGAGGTCTGCTGTCGAGgtgtacTGTGACATGGCTTCAGAAGGAGGACGGTGGACGgTGTTCCAGAGGAGGATGGATGGCACAGTGAACTTCTACAGGGGCTGGGATCAATACAAGATCGGCTTTGGTAATGCTGCTGGAGAGTACTGGCTCGGTGAGAACCACATCCACTATCTGACAAATAACAAGAAGAGTGAGCTGCTGGTCGACATGGAGGACTTTGAGGGGAAAAAAGTGTTCGCTCGGTACTCTTCGTTCTCCGTCGGTGCAGAATGTGACGGATTCGTGCTGAATGTGTCTGGATTCATTAATGGAGGGGCAGGAGACTCCCTGACTGGTCACAACGGAATGAAGTTCACCACCTTTGACAAAGACCAGGACACCTGGCATGGGAACTGTGCCAGATCATTCCTGGGGGCGTTCTGGTACAACGGCTGTCACTATGCAAATCCAAACGGTGTTTATCATTGGGGAGCTGACAGCACTCTCTTTGCTGTTGGAGTGAATTGGTTTCATTGGAAAGGTCATAACTACTCCCTGAAGACCATCAGCATGAAGGTCCGTCCTGTGCTGTAGTTCTCCAGGACCAACGTCCAGCAGAATATCAGCTCATCTCTTGtgatttatttctctttctctcattaaGCATTTCATCTTACAACAGGTCTTATTTTCCTGAAACTGGGCACCAGCACAAGAAAACCAACTGACGTTTGTAAGTCTTGTTACCGTCTGTGGTGGTGTAAAGTAGAGCtgcacaaaatgagaaaaatatgcgATAAGTTGTTGACTATGGCGATAACAATATCccttgcaataaataaacagatattcaagtgttctcagttctacTGCTCAGTACTctactaaaatacaacaaacaataatttccaacattcttttattgaacaaattgaacattgaaattAATATAAACGGCAGCAAAATAATGAAAGttacattttactttacttttaacaTGATGCAGCCTTTAGCGACGTGTTTATTGCGCAAGCGatagcgatttaaaaaaaaaaatattgtgcagccctagtttaaggCTGTCGCAGCTCGCTGCAACGTGGAAGAAAAGTCAGATGTGTCTCCAGTTGGGCGGCTGCAGCAGGAAAGTAGGGCCCATAATCTTTAAATGGAAACACATACATAGTCTGATCGGGTGTTAATCACTGCATGAACGGCTAACACAAGTCTAAAAGAGGAAAAAGGTTATAAAATGAAACCATCTTTGTAGTTCAGGACAGTCAGTTGATGTTTGGTGGAGGTTTGAAACTCTAATGTGAATCTTTATCTGCTGTACGGTGACAATAAATAAGAAGCTGAGCATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU282850 False 1009 lncRNA 0.40 2 584120 647222
XM_039788865.1 True 1504 mRNA 0.44 5 644399 647222

Neighbor

gene id symbol gene type direction distance location
LOC120551393 LOC102215625,LOC102798344,LOC101468337,LOC100694161 coding upstream 80270 499350 ~ 503850 (+)
LOC120551392 LOC106561221,LOC106572279,LOC106560410,LOC106561082,LOC106564134 coding upstream 142940 435073 ~ 441180 (+)
si:ch73-256g18.2 NA coding upstream 213417 358845 ~ 370703 (+)
LOC120551387 NA coding upstream 253444 328144 ~ 330676 (+)
LOC120551385 NA coding upstream 271334 302567 ~ 312786 (+)
LOC120551427 slc16a12 coding downstream 86186 733408 ~ 735571 (+)
LOC120551413 NA coding downstream 241766 888988 ~ 897220 (+)
LOC120551416 NA coding downstream 254138 901360 ~ 911342 (+)
LOC120551418 NA coding downstream 305901 953123 ~ 957633 (+)
LOC120551425 NA coding downstream 330514 977736 ~ 982738 (+)
G208761 NA non-coding upstream 47234 515446 ~ 536886 (+)
G208797 NA non-coding upstream 85513 391049 ~ 498607 (+)
G208810 NA non-coding upstream 137891 444385 ~ 446229 (+)
G208794 NA non-coding upstream 198805 383842 ~ 385315 (+)
G208789 NA non-coding upstream 214919 367982 ~ 369201 (+)
G208765 NA non-coding downstream 6464 653686 ~ 654842 (+)
G208780 NA non-coding downstream 46772 693994 ~ 839360 (+)
G208830 NA non-coding downstream 120494 767716 ~ 772016 (+)
LOC120551436 NA non-coding downstream 141255 788477 ~ 794342 (+)
G208785 NA non-coding downstream 141286 788508 ~ 807103 (+)
LOC120551395 LOC100696016,LOC101071475 other upstream 26627 325913 ~ 557493 (+)
G208758 LOC104938904 other upstream 34043 536938 ~ 550077 (+)
LOC120551557 NA other upstream 485222 62619 ~ 98898 (+)
LOC120550628 mtx1,LOC103363672,LOC106533521 other upstream 529505 41891 ~ 54615 (+)
G208768 NA other downstream 7677 654899 ~ 655220 (+)
LOC120551422 NA other downstream 380079 1027301 ~ 1039369 (+)
G208851 minpp1,LOC102795090 other downstream 411620 1058842 ~ 1059440 (+)
G208852 minpp1 other downstream 443325 1090547 ~ 1093597 (+)
lipf lipa other downstream 545073 1192295 ~ 1255677 (+)

Expression


Co-expression Network