G208887 (acta2,LOC107594158,LOC105896556,LOC101064889,LOC103374497)


Basic Information

Item Value
gene id G208887
gene name acta2,LOC107594158,LOC105896556,LOC101064889,LOC103374497
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1332746 ~ 1333550 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU283064
CTTCATGGTGCTGGGCGCCAGCGCGGTGATCTCCTTCTGCATGCGGTCGGCGATGCCGGGGTACATGGTGGTCCCCCCAGACAGCACGTTGTTGGCGTACAGGTCTTTACGGATGTCGATGTCACACTTCATGATGCTGTTGTAGGTCGTCTCGTGGATCCCTGCTGACTCCATGCcgatgAAGGACGGCTGGAACAGCGTCTCTGGGCAGCGAAACCTCTCGTTGCCGATGGTGATGACCTGTCCGTCCGGCAGCTCGTAGCTCTTCTCCAGCGATGATGAGGTCGCCGCGGTCGCCATCTCGTTCTCAAAGTCCAGAGCTACGTAGCACAGCTTCTCCTTG

Function

symbol description
acta2 Acts upstream of or within heart contraction. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including cardiovascular system; gut; mesoderm; musculature system; and swim bladder. Human ortholog(s) of this gene implicated in Moyamoya disease; megacystis-microcolon-intestinal hypoperistalsis syndrome; and thoracic aortic aneurysm. Orthologous to several human genes including ACTA2 (actin alpha 2, smooth muscle).

NR:

description
PREDICTED: actin, aortic smooth muscle

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283064 True 343 lncRNA 0.59 2 1332746 1333550

Neighbor

gene id symbol gene type direction distance location
LOC120551397 NA coding upstream 29663 1298027 ~ 1303083 (+)
ptenb pten coding upstream 139525 1181045 ~ 1193221 (+)
LOC120551414 NA coding upstream 243586 1043694 ~ 1089160 (+)
LOC120551421 NA coding upstream 283136 1043672 ~ 1049610 (+)
LOC120551430 atad1 coding upstream 313856 1015297 ~ 1018890 (+)
LOC120551407 NA coding downstream 45101 1378651 ~ 1380831 (+)
LOC120551423 NA coding downstream 51813 1385363 ~ 1398958 (+)
LOC120551406 NA coding downstream 80238 1413788 ~ 1427061 (+)
LOC120551410 NA coding downstream 96922 1430472 ~ 1437585 (+)
LOC120551412 NA coding downstream 127724 1461274 ~ 1464607 (+)
G208864 NA non-coding upstream 106061 1209423 ~ 1226685 (+)
LOC120551437 NA non-coding upstream 132573 1198922 ~ 1200173 (+)
G208853 minpp1 non-coding upstream 231898 1099315 ~ 1100848 (+)
LOC120551440 NA non-coding upstream 249312 1071580 ~ 1083434 (+)
G208850 NA non-coding upstream 274318 1056886 ~ 1058428 (+)
G208888 NA non-coding downstream 1432 1334982 ~ 1367880 (+)
G208889 acta2,LOC103382302 non-coding downstream 2012 1335562 ~ 1341958 (+)
G208890 NA non-coding downstream 13255 1346805 ~ 1363691 (+)
G208891 NA non-coding downstream 22566 1356116 ~ 1389895 (+)
G208914 NA non-coding downstream 158140 1491690 ~ 1492031 (+)
stambpl1 NA other upstream 4717 1313201 ~ 1328029 (+)
lipf lipa other upstream 77069 1192295 ~ 1255677 (+)
G208867 NA other upstream 127498 1204590 ~ 1205248 (+)
G208852 minpp1 other upstream 239149 1090547 ~ 1093597 (+)
G208851 minpp1,LOC102795090 other upstream 273306 1058842 ~ 1059440 (+)
G208777 NA other downstream 96959 1430509 ~ 1493181 (+)
G208911 NA other downstream 132468 1466018 ~ 1571837 (+)
LOC120550772 NA other downstream 164897 1498447 ~ 1577370 (+)
LOC120550774 NA other downstream 260931 1594481 ~ 1616080 (+)
noc3l noc3l other downstream 283172 1616722 ~ 1636135 (+)

Expression


Co-expression Network