G208889 (acta2,LOC103382302)


Basic Information

Item Value
gene id G208889
gene name acta2,LOC103382302
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1335562 ~ 1341958 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU283067
GCTACGTACATGGCGGGAACATTAAAGGTCTCGAACATGATCTGGGTCATCTTCTCGCGGTTAGCTTTGGGGTTGAGCGGCGCCTCCGTGAGCAGCGTGGGATGTTCCTCCGGAGCCACTCGCAGCTCGTTGTAAAACGAGTGGTGCCAGATCTTCTCCATGTCATCCCAGTTGGTGATGATTCCGTGTTCGATGGGATATTTCAGCGTCAGGATTCCTCGTTTACTCTGAGCCTCGTCTCCTACGTAGCTGTCCTTCTGCCCCATGCCCACCATCACTCCctggtgGCGTGGTCGGCCCACTATGGAGGGGAAGACAGCTCGTGGGGCATCATCTCCAGCGAAGCCGGCTTTACACAGACCTGATCCGTTATCACAGACCAGAGCAGTGCTCTCCTCATCATCACACATGTCTGCAGGCAGGGGGGCGCTGTGGGCGAGCTACGACACGTGGCGGTGAGTCTGCAGGACAAGGGCGGGGCAGAAGTGAGAGTCTGAACTCTGTGAGACTGACTTTATCaactctccctccatccctccatccctccatcccaaACAAG

Function

symbol description
acta2 Acts upstream of or within heart contraction. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including cardiovascular system; gut; mesoderm; musculature system; and swim bladder. Human ortholog(s) of this gene implicated in Moyamoya disease; megacystis-microcolon-intestinal hypoperistalsis syndrome; and thoracic aortic aneurysm. Orthologous to several human genes including ACTA2 (actin alpha 2, smooth muscle).

NR:

description
actin, aortic smooth muscle

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283067 True 559 lncRNA 0.57 5 1335562 1341958

Neighbor

gene id symbol gene type direction distance location
LOC120551397 NA coding upstream 32479 1298027 ~ 1303083 (+)
ptenb pten coding upstream 142341 1181045 ~ 1193221 (+)
LOC120551414 NA coding upstream 246402 1043694 ~ 1089160 (+)
LOC120551421 NA coding upstream 285952 1043672 ~ 1049610 (+)
LOC120551430 atad1 coding upstream 316672 1015297 ~ 1018890 (+)
LOC120551407 NA coding downstream 36693 1378651 ~ 1380831 (+)
LOC120551423 NA coding downstream 43405 1385363 ~ 1398958 (+)
LOC120551406 NA coding downstream 71830 1413788 ~ 1427061 (+)
LOC120551410 NA coding downstream 88514 1430472 ~ 1437585 (+)
LOC120551412 NA coding downstream 119316 1461274 ~ 1464607 (+)
G208885 NA non-coding upstream 222 1312056 ~ 1335340 (+)
G208887 acta2,LOC107594158,LOC105896556,LOC101064889,LOC103374497 non-coding upstream 2012 1332746 ~ 1333550 (+)
G208864 NA non-coding upstream 108877 1209423 ~ 1226685 (+)
LOC120551437 NA non-coding upstream 135389 1198922 ~ 1200173 (+)
G208853 minpp1 non-coding upstream 234714 1099315 ~ 1100848 (+)
G208890 NA non-coding downstream 4847 1346805 ~ 1363691 (+)
G208891 NA non-coding downstream 14158 1356116 ~ 1389895 (+)
G208914 NA non-coding downstream 149732 1491690 ~ 1492031 (+)
LOC120550773 NA non-coding downstream 165383 1507341 ~ 1529819 (+)
G208916 NA non-coding downstream 186353 1528311 ~ 1614871 (+)
stambpl1 NA other upstream 7533 1313201 ~ 1328029 (+)
lipf lipa other upstream 79885 1192295 ~ 1255677 (+)
G208867 NA other upstream 130314 1204590 ~ 1205248 (+)
G208852 minpp1 other upstream 241965 1090547 ~ 1093597 (+)
G208851 minpp1,LOC102795090 other upstream 276122 1058842 ~ 1059440 (+)
G208777 NA other downstream 88551 1430509 ~ 1493181 (+)
G208911 NA other downstream 124060 1466018 ~ 1571837 (+)
LOC120550772 NA other downstream 156489 1498447 ~ 1577370 (+)
LOC120550774 NA other downstream 252523 1594481 ~ 1616080 (+)
noc3l noc3l other downstream 274764 1616722 ~ 1636135 (+)

Expression


Co-expression Network