LOC120551576 (lrch1,LOC106582244)


Basic Information

Item Value
gene id LOC120551576
gene name lrch1,LOC106582244
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 2344281 ~ 2362359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU283630
GGTGTAATGAAATGCATGTGGCCTCTGTGATGGTGAGCTGTGTCGTCGTCCTTCTCTCGCTGCAGGACATCAGCTGTAACGAGATCACGGCTCTCCCTCGCCACATCGGACGACTCAAAGCGCTGCGGGAACTCAACGTCCGCAGAAACCTTCTCTGCGTCCTGCCCGAAGACCTGGCTGCCCTTCCTCTGGTGAAGTTTGACTTCTCCTGTAACAAGGTGTCGACCATCCCGGTGAGCTACAGGAAGATGAAACAGCTCCAGTCCCTCCAGTTAGAAAACAACCCACTGCAGAGTCCACctgcacagaTCTGTATAAAAGGGAAAGTTCACATATTCAAGTATCTGAGCATCGAGGCGTGTCGCAGTGACAAGATGCCCGACTCTCTGTACCTGCCTGTCATGGAGCGGCTCAGCCTATCGCG
>XM_039789064.1
GACATCAGCTGTAACGAGATCACGGCTCTCCCTCGCCACATCGGACGACTCAAAGCGCTGCGGGAACTCAACGTCCGCAGAAACCTTCTCTGCGTCCTGCCCGAAGACCTGGCTGCCCTTCCTCTGGTGAAGTTTGACTTCTCCTGTAACAAGGTGTCGACCATCCCGGTGAGCTACAGGAAGATGAAACAGCTCCAGTCCCTCCAGTTAGAAAACAACCCACTGCAGAGTCCACctgcacagaTCTGTATAAAAGGGAAAGTTCACATATTCAAGTATCTGAGCATCGAGGCGTGTCGCAGTGACAAGATGCCCGACTCTCTGTACCTGCCTGTCATGGAGCGGCTCAGCCTATCGCGGCCCAccaccggcaggtcagtctctTCTGGGTCAGCATCGTGGGAAACCTCTCTCGCCTCCTTCATCTCCGCGGCGCTCCAGCGCGGCGGCCGCCAGGAGCCCGTTACCACGCCACCGGAGCGGTTAGTCCGGTTGGGTTGTGATGTGGAGCGATGCTGA

Function

symbol description
lrch1 Predicted to be involved in cellular response to chemokine and negative regulation of T cell migration. Predicted to be active in cytoplasm. Orthologous to human LRCH1 (leucine rich repeats and calponin homology domain containing 1).

NR:

description
PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283630 False 424 TUCP 0.54 3 2344281 2360302
XM_039789064.1 True 519 mRNA 0.58 4 2344346 2362359

Neighbor

gene id symbol gene type direction distance location
LOC120551177 LOC100692392,LOC106609700,LOC107593142,LOC107585968 coding upstream 31832 2302291 ~ 2312449 (+)
LOC120551574 idh3a,LOC103375458,LOC106534100 coding upstream 45477 2277900 ~ 2298804 (+)
LOC120551573 NA coding upstream 337736 1992977 ~ 2006545 (+)
rpp30 rpp30,LOC102790171 coding upstream 680817 1648435 ~ 1663464 (+)
LOC120550771 LOC103374694 coding upstream 751537 1553857 ~ 1592744 (+)
LOC120551356 LOC107387424,LOC101064220 coding downstream 164303 2526662 ~ 2533463 (+)
LOC120551583 NA coding downstream 1224720 3587079 ~ 3621179 (+)
LOC120551587 NA coding downstream 1308231 3670590 ~ 3687777 (+)
LOC120550572 NA coding downstream 1466956 3829315 ~ 3832201 (+)
atoh1c NA coding downstream 1580022 3942381 ~ 3943422 (+)
G209276 NA non-coding upstream 10184 2332735 ~ 2334097 (+)
G209283 NA non-coding upstream 20202 2323524 ~ 2324079 (+)
G209281 NA non-coding upstream 42881 2300442 ~ 2301400 (+)
G209275 NA non-coding upstream 74853 2251690 ~ 2269428 (+)
G209234 NA non-coding upstream 249563 2047861 ~ 2094718 (+)
G209289 NA non-coding downstream 9517 2371876 ~ 2372148 (+)
G209290 NA non-coding downstream 44138 2406497 ~ 2456284 (+)
G209292 NA non-coding downstream 62114 2424473 ~ 2424767 (+)
G209295 NA non-coding downstream 67871 2430230 ~ 2438182 (+)
G209300 NA non-coding downstream 97059 2459418 ~ 2498270 (+)
G209284 LOC108247036,LOC103364826,LOC106530008 other upstream 9996 2332178 ~ 2334285 (+)
noc3l noc3l other upstream 708146 1616722 ~ 1636135 (+)
LOC120550774 NA other upstream 728201 1594481 ~ 1616080 (+)
LOC120550772 NA other upstream 766911 1498447 ~ 1577370 (+)
G208911 NA other upstream 772444 1466018 ~ 1571837 (+)
G209344 NA other downstream 308916 2671275 ~ 2833674 (+)
G209514 NA other downstream 1283650 3646009 ~ 3646997 (+)
LOC120550571 NA other downstream 1456494 3818853 ~ 3823251 (+)
LOC120551345 plekha1,LOC106957628 other downstream 1636014 3998373 ~ 4028282 (+)
map2k6 LOC103367941,LOC105926483,LOC102221885,LOC100697345,LOC103150707 other downstream 2311878 4674237 ~ 4716583 (+)

Expression


Co-expression Network