LOC120550571


Basic Information

Item Value
gene id LOC120550571
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 3818853 ~ 3823251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU283994
CAGCTTTCTTCGTAGCGCGGTGAAGTTGGCTGGACGTTTGATATTCACTTGATATTCGATTTTAACTTCCTGTTCTGTTGTTAGGTTCTGTCTaaggggccgtctacaaattaccgTTTTGGTAGATTGCAAAGAATTTTCTCAGAcatatattcaccaaaaatcaatgaaagggACTTTTCTCATTCCGATCTGCGTCCGCCCTCCGCGCCAGAGCCGTGAATAGTAGGGCTTAATTCTCTTAACTTTTACCATTCATTCTCTATGTGACAGCCTTcacatcatcagcagcagcagcagtagagaATATAATCCACGGAGGTTTTATATCGGTATGTACGGCGTTTTAATCACTGTTCTGTCGTCTAAGAAGCTGGTAAACTTATCAAAAGATCCAACTTCTTTCCAGGAAAGATTACGGTGTCTTTAGCGAAGGCTCCATCAGCACACAGGACAGAGCCAACAGCGGACCGCTTCCAGACCTGCCGAGCCTGATGACTCCTCTGGGATTGTTGCTTCTGTGAAAGCCAGGCTGAAGGCCCCGCTGCCAGCCCCTTCTAGCTCCTCAGCTCAGATGATATGTGGACTTCAGCATGTGGAGCCAGGCTGTCGTCATGTTGTGTTAAATTGTGACAAGCACAGGGTACAACCCAACATCCCAGCTGCTGTAGCTATGGAGACCGAGGATCACTGCCCTGCTGCTGTGGTGGCCACAGACTCTCAGgagaccagtgaagatccAGTTGGAGTGGTGCTGATCACACAGCTGGAGTGGTCTTTCAGCAGGGCTCTGAAGCAGTTTCCCGGTCCCAGCGGTCCCAGCGGTCCCAGCACACAGCTGCTACCAGAGGCAGTCTTTCATGGATACAGGAGGAGTCTCTGAGCCGGTCTACAGTGGAGCGGATTGGGTCAGACATCCtggttcaacaacaacaacaacaacatcatcatcatcatcatcatcatcatcatcatcatcagcagcagcagccgcatcagcagctgcagcagaaaaaGATGACCAGGAACTGTTTAGCCTACAGTCAGCTGAAGTCGTAGATGGAGTCAGAGGAGAGGGCGAACAGGAAGTCAGCAGTGCAGCTTCCAACAGGTCGCCTGTGCAGGTTCTGTCATCAACCCCTAAAGCAGGGCCCTGACAGccctcacatactgtacatgacaGCTTCCCCGGGGTACTAGGGAAATACATCTACTGCCCCTCCAGAGTGTTCTTCCCCTACAAGGCACAGGGCATGGGGAAGGAGATGACCTGGGGGTTCAAACTGTTGGACTTCTATGAGGCTGAGAGACACAAAAATTCAAAGAGAAGACAGACAAATGGACTGCTAACCCACCAAACGACAAATATATCCTCTCGCAcgtacacgcacgcacgcactcacgcaCACAAGACACACCACTGTGCATTGTCAGGACTGTTTCTTCTGTTTTCATAGCCAAGCAATTGTGATCTTTAGTTTAATTTAACTGTATTCACCTTTACTGGACATCTGGTCtgattcatcatcatcatcatcatcatcctcacaTAGTCTCTCAGCACCTTTACATGCACTCTAGTGTTCCCTCTacgtgtgtaaatgtgtaatattttaataaattattcCGTAAATGTATACCCATATTtagttgttaatttgttttatatataacaTTTGAATTATATAAATAAGCAATGTGTCAATGTCagtttttattgtgtgtttacaAATGA
>TU283997
CTTAGACTGACTAAATCACTATATGTGATGCTGTATTGcaggagaccagtgaagatccAGTTGGAGTGGTGCTGATCACACAGCTGGAGTGGTCTTTCAGCAGGGCTCTGAAGCAGTTTCCCGGTCCCAGCGGTCCCAGCGGTCCCAGCACACAGCTGCTACCAGAGGCAGTCTTTCATGGATACAGGAGGAGTCTCTGAGCCGGTCTACAGTGGAGCGGATTGGGTCAGACATCCtggttcaacaacaacaacaacaacatcatcatcatcatcatcatcatcatcatcatcatcagcagcagcagccgcatcagcagctgcagcagaaaaaGATGACCAGGAACTGTTTAGCCTACAGTCAGCTGAAGTCGTAGATGGAGTCAGAGGAGAGGGCGAACAGGAAGTCAGCAGTGCAGCTTCCAACAGGTCGCCTGTGCAGGTTCTGTCATCAACCCCTAAAGCAGGGCCCTGACAGccctcacatactgtacatgacaGCTTCCCCGGGGTACTAGGGAAATACATCTACTGCCCCTCCAGAGTGTTCTTCCCCTACAAGGCACAGGGCATGGGGAAGGAGATGACCTGGGGGTTCAAACTGTTGGACTTCTATGAGGCTGAGAGACACAAAAATTCAAAGAGAAGACAGACAAATGGACTGCTAACCCACCAAACGACAAATATATCCTCTCGCAcgtacacgcacgcacgcactcacgcaCACAAGACACACCACTGTGCATTGTCAGGACTGTTTCTTCTGTTTTCATAGCCAAGCAATTGTGATCTTTAGTTTAATTTAACTGTATTCACCTTTACTGGACATCTGGTCtgattcatcatcatcatcatcatcatcctcacaTAGTCTCTCAGCACCTTTACATGCACTCTAGTGTTCCCTCTacgtgtgtaaatgtgtaatattttaataaattattcCGTAAATGTATACCCATATTtagttgttaatttgttttatatataacaTTTGAATTATATAAATAAGCAATGTGTCAATGTCagtttttattgtgtgtttacaAATGA
>XR_005637752.1
TTACCATTCATTCTCTATGTGACAGCCTTcacatcatcagcagcagcagcagtagagaATATAATCCACGGAGGTTTTATATCGGTATGTACGGCGTTTTAATCACTGTTCTGTCGTCTAAGAAGCTGGTAAACTTATCAAAAGATCCAACTTCTTTCCAGGAAAGATTACGGTGTCTTTAGCGAAGGCTCCATCAGGTAAATACCTGACACACAATAAATGTTACCATTACAGTCGTCTCGTGGCGATGGAGAGGGGGATGCTTAATCTCTCTCAGTCTAAATTTGACACTGAACTAAGTAGGTGGATCTAGTTTAAtaaccagagtattttttaaactCTTACTCCTACTGGTCATGATAATAGTCtaatgtcagctgtgctttcagggccagcagcagcagtctaaAGAGCCACGGCTGTGTCTCCAccaacaggtttttttttctcaggctGTCATTCAAGGATTTGGCATTTTAAATTTATATATTCAATAGGCACAACAAACCACATCTTTGATTGTGTGCTTACTATATATTGATATTGTTTCTGTGCTTTACCTGTTTTCTTAAAagcattgtttttttcatgacaaataaataatgattCATAATTTAAggaaatatggtgttttcagTCTGTATTCACAGTTTGTTAGAGAGAAAACATATAAAGACACATTGTGAAGAATAAACTAACTTGACTGTGTGAGGAAAATGACTCTGAATTGTTTTTACAGCACACAGGACAGAGCCAAC
>XR_005637753.1
TTACCATTCATTCTCTATGTGACAGCCTTcacatcatcagcagcagcagcagtagagaATATAATCCACGGAGGTTTTATATCGGTATGTACGGCGTTTTAATCACTGTTCTGTCGTCTAAGAAGCTGGTAAACTTATCAAAAGATCCAACTTCTTTCCAGGAAAGATTACGGTGTCTTTAGCGAAGGCTCCATCAGGTAAATACCTGACACACAATAAATGTTACCATTACAGTCGTCTCGTGGCGATGGAGAGGGGGATGCTTAATCTCTCTCAGTCTAAATTTGACACTGAACTAAggccagcagcagcagtctaaAGAGCCACGGCTGTGTCTCCAccaacagCACACAGGACAGAGCCAACAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283994 True 1735 TUCP 0.47 7 3818853 3823251
TU283997 False 1052 TUCP 0.46 2 3821899 3823251
XR_005637752.1 False 758 lncRNA 0.37 3 3819101 3820616
XR_005637753.1 False 370 lncRNA 0.45 5 3819101 3820620

Neighbor

gene id symbol gene type direction distance location
LOC120551587 NA coding upstream 131076 3670590 ~ 3687777 (+)
LOC120551583 NA coding upstream 197674 3587079 ~ 3621179 (+)
LOC120551356 LOC107387424,LOC101064220 coding upstream 1285390 2526662 ~ 2533463 (+)
LOC120551177 LOC100692392,LOC106609700,LOC107593142,LOC107585968 coding upstream 1506404 2302291 ~ 2312449 (+)
LOC120551574 idh3a,LOC103375458,LOC106534100 coding upstream 1520049 2277900 ~ 2298804 (+)
LOC120550572 NA coding downstream 6064 3829315 ~ 3832201 (+)
atoh1c NA coding downstream 119130 3942381 ~ 3943422 (+)
LOC120551336 htra1 coding downstream 225998 4049249 ~ 4083502 (+)
asb3 LOC103361130,LOC104944901 coding downstream 283969 4107220 ~ 4118771 (+)
abca5 LOC103361128 coding downstream 295601 4118852 ~ 4160298 (+)
LOC120550570 NA non-coding upstream 28178 3787973 ~ 3790675 (+)
G209508 NA non-coding upstream 295087 3469012 ~ 3523766 (+)
G209501 NA non-coding upstream 470753 3347898 ~ 3348100 (+)
G209382 NA non-coding upstream 617719 3110699 ~ 3201134 (+)
G209375 NA non-coding upstream 808441 2943396 ~ 3010412 (+)
G209650 NA non-coding downstream 198410 4021661 ~ 4042686 (+)
LOC120551338 NA non-coding downstream 262073 4085324 ~ 4087838 (+)
G209684 NA non-coding downstream 360322 4183573 ~ 4186720 (+)
G209685 NA non-coding downstream 364842 4188093 ~ 4188482 (+)
G209686 NA non-coding downstream 368663 4191914 ~ 4192168 (+)
G209514 NA other upstream 171856 3646009 ~ 3646997 (+)
G209344 NA other upstream 985179 2671275 ~ 2833674 (+)
LOC120551576 lrch1,LOC106582244 other upstream 1456494 2344281 ~ 2362359 (+)
G209284 LOC108247036,LOC103364826,LOC106530008 other upstream 1484568 2332178 ~ 2334285 (+)
noc3l noc3l other upstream 2182718 1616722 ~ 1636135 (+)
LOC120551345 plekha1,LOC106957628 other downstream 175122 3998373 ~ 4028282 (+)
map2k6 LOC103367941,LOC105926483,LOC102221885,LOC100697345,LOC103150707 other downstream 850986 4674237 ~ 4716583 (+)
LOC120550763 LOC100696279,LOC101467831,LOC107093968 other downstream 1768084 5591335 ~ 5687896 (+)
LOC120551158 NA other downstream 1991985 5815236 ~ 6259659 (+)
kctd2 kctd2,LOC102796578,LOC107089511,LOC103371831,LOC103398851,LOC106521991 other downstream 2259851 6083102 ~ 6092738 (+)

Expression


Co-expression Network