G209875


Basic Information

Item Value
gene id G209875
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 4718593 ~ 4720876 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU284413
AGATAAAAGTCTTTCAGCTTTCTCAAAACCTGCATCAagaaacttttttgttttttgttgtcacAGCTTCTCTACCATGTCAGGCTTTGTGTGCGCATTCATATATATCTGCTTGCATATGGGAAATCCCGTCTGCGAGTGGCTCGTGTTCACCTGCTGAGTAAACCTCTGCCACCGGGGGGTTGACGGGGGCAGGACGTCCGAGTGGAAACTGTCTTTCTCGGGCGATTATTGTCACATCCCATCatgaatccccccccccctcttaaCCTCTGAGTTAATTTAAGTGCCCAACAACAGGCATGTATTTCAGGATGATGCGTTGGGAATATCCAGTAGGCGAGCGGCTTTTCCTGGAACAAGAGGCCGCTTTTTTTCAAGTGTTTGAAGGTCTGATAGAGATTGAAAGCTTGGATAGAATCGGAGGAAATTTTGCTCACCTTCTTCCTCATCCTCAAAATGTGTCAGCGGAtgcatcaacaaaaaaaaaatcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgtttaactatatttgtggggtccaaaaaccgggagtccagtatatttgtggggtcccaacagctttgtggggctaaaatgctggaccccacaagtttaaagggctgtttgagggttacgacttggttgtaggattagggatagaattgaCCATTCGcaaaagccacgccccctagttATTGTTACTACGCCCGTCAAACAATTGAGAACCAGACACATAGCCATGGCTGGGTTGAGCTCCATACCTATTGGTATAAGTGATTGGTTTTGGAGTAATGCAGCAGACGTATCCTCCAGGGCACGACAGAAAGGGCTGCAAtatgcagtggagggatatGTTCAATGACCGTCAACCTCTTGCTAAATTATCTGTGTCAATAGCAACATGTGCTTGACAGGCTAACAGCTATCAGGCTGCCTGAATTTCCTACGGAATAATAAAGTATCTAATGTTCTAACTTTACTACTTTCGATAATAATGCTATATAGAACTATAATATATAACTGAAGTCCAGTTTTACAGATTGTAACTGTTATGTACTTAGCTACTTAAACTACTTACTGATAATTGATATAAGTTAGCTCACTAGCTTTACTTACCTTGGAGCAGACATATGTAGCTATGCTTATTAATCTTCGAGGCATTTAGCTGTGTGAGGTCTCCCACACTGCTTAATCCATTGTCGGCATCGTTCCGCTTgggtcttgggctttggaaaggcGAAAAAAACGACCCCTCCCTCTAGACTTTTGGGGTACCTGGTGTCAGACTTGCAGGTGCCATAGGTGCATCGTTTCACCATCTTGCTGAAATCGCAATGTTTGACGGGGCTCCTTCTccttagttacagttgctgagctAGGATTGGATGAGGACCGTTCGAGGGCGGGGTTTTGTGAACGGtcaattaggttatggttagggtgagggtaagggttaaggttaaggttaggcatttagttgtgatggttaaggttaaggtaagtggctagggaatgcattatgtcaatgacaggtccctacaaagatagtgccacaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgaaccGTGCTGAGGTTTTCGTGAACGCTTTGTTTTACTCATCTATTGCACAACACTTTGAGGGTTCTCCAGGTCGAGTACTACGCCATGACTTGTGACCCGTGgagctttctgtctctctgttgcaGGTGGTAAACTGCTGGTACACGTAGCTGTATGTGACTTCTGATGTTGCGGTGTTGTGTTCTTTTATCCGGGGTGAGGGTTTTTCAGATCAAGACGTATCCAGAGATGCTACTGTATGTGGAAGAGGGTCTTTCGTTGCTGTTGGGGTGGGTTTCGGGGGAGGGTTACCGTGGCTACTGCTCTTTGCCCCAATGGAAAGTGAAGTTCTCAGTATATGTACACATCTCTAAAAGCCTCTGACTGATGACTGTTCATTTAGAGCTCAATGAATTTCTATACATATTTTAGATTGCTCAAACTGATTGTGTGCAATTGTAATGATggaaattcaataaaaaaaaga

Function

NR:

description
PREDICTED: chromo domain-containing protein cec-1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU284413 True 2128 lncRNA 0.44 2 4718593 4720876

Neighbor

gene id symbol gene type direction distance location
LOC120551185 LOC104948324,LOC106922417,LOC103150698 coding upstream 48076 4656317 ~ 4670517 (+)
LOC120551740 NA coding upstream 306820 4408832 ~ 4411773 (+)
baiap2b baiap2,LOC101465701,LOC102783223 coding upstream 411146 4195773 ~ 4307447 (+)
chmp6b chmp6,LOC103374447,LOC100705156,LOC101486168 coding upstream 535476 4171678 ~ 4183117 (+)
abca5 LOC103361128 coding upstream 558295 4118852 ~ 4160298 (+)
LOC120551365 LOC104929210,LOC103367387 coding downstream 168210 4889086 ~ 4891504 (+)
LOC120550670 NA coding downstream 196073 4916949 ~ 4919967 (+)
plaub NA coding downstream 203807 4924683 ~ 4939821 (+)
hid1b hid1 coding downstream 226094 4946970 ~ 4981418 (+)
LOC120551198 LOC104952591,LOC103376278 coding downstream 287349 5008225 ~ 5021094 (+)
G209848 NA non-coding upstream 85660 4632699 ~ 4632933 (+)
G209847 NA non-coding upstream 88982 4629175 ~ 4629611 (+)
G209839 NA non-coding upstream 126316 4591991 ~ 4592277 (+)
G209838 NA non-coding upstream 127579 4590228 ~ 4591014 (+)
G209831 pde6g,LOC102781464,LOC102221623,LOC103367935 non-coding upstream 129302 4582850 ~ 4589291 (+)
G209879 NA non-coding downstream 18454 4739330 ~ 4739619 (+)
LOC120551570 NA non-coding downstream 22562 4743438 ~ 4855411 (+)
G209905 NA non-coding downstream 179894 4900770 ~ 4900997 (+)
G209906 NA non-coding downstream 183222 4904098 ~ 4904306 (+)
G209931 NA non-coding downstream 255053 4975929 ~ 5030024 (+)
map2k6 LOC103367941,LOC105926483,LOC102221885,LOC100697345,LOC103150707 other upstream 2010 4674237 ~ 4716583 (+)
LOC120551345 plekha1,LOC106957628 other upstream 690311 3998373 ~ 4028282 (+)
LOC120550571 NA other upstream 895342 3818853 ~ 3823251 (+)
G209514 NA other upstream 1071596 3646009 ~ 3646997 (+)
G209344 NA other upstream 1884919 2671275 ~ 2833674 (+)
LOC120550763 LOC100696279,LOC101467831,LOC107093968 other downstream 870459 5591335 ~ 5687896 (+)
LOC120551158 NA other downstream 1094360 5815236 ~ 6259659 (+)
kctd2 kctd2,LOC102796578,LOC107089511,LOC103371831,LOC103398851,LOC106521991 other downstream 1362226 6083102 ~ 6092738 (+)
LOC120551157 NA other downstream 1498993 6219869 ~ 6270445 (+)
stx4 stx4 other downstream 1657260 6378136 ~ 6392578 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1692428 NA non-coding NC_048584.1 CM023238.2 38643523 ~ 38645620 (+)