psmd11b (LOC103367354,LOC102209997,LOC101470828,LOC100706559,LOC101174707)


Basic Information

Item Value
gene id psmd11b
gene name LOC103367354,LOC102209997,LOC101470828,LOC100706559,LOC101174707
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6951067 ~ 6960076 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU285265
TACTCGCTGATTGATCTACACTCTAAATAAAGAAGAtgttttggaaaaaaagtgacattaatcttttttttgtcGTCATCCATCCAGACAGATGCACTGAAATGTGTTGCCCAAGCCTGCAAGAACAGATCATTAGCAGACTTTGAAAAGGCCCTAACAGAGTACAGAGCGGAGCTGAGGGATGATCCCATCATCAACACTCACCTGGCCACGCTGTACGACAACCTGCTGGAACAAAACCTCATCCGTGTCATCGAACCCTTTTCCAGAGCACAGATAGAACACATATCGGGTCTAATGAAACTGTCAAAGgggGATGTTGAGAGGAAATTATCACAGATGATTCTGGACAAAAAGTTTCACGGAATCCTTGACCAAGGTGAAGGTGTCCTGATCATATTCGAAGAGCCCCCTGTGGACAAAACATACGAAGCAGCCTTGGAAACCATTCAGAACATGAGCAAAGTCGTGGATTCACTTTACAACAAAGCCAAGAAGCTGACATAGATTGCCACGGCAGTGCGATGGAGGAACTGTGTGTTTGACCAGCGTGTGTAACATTTTAAGAAGGGGACAAGGGAGCGCAACAAAAAGTCCCACAAACTGCAACAAACAGGATTCCCCATCAaactccctcccccctctctcctttccCTCAATGGACAATTTCATCACTTCTCTTGTTTATTTTACCCTCTTTGATTTTGATATCTCTTCAGGATTCTGTATAACACTCAGCGGCCAAATCAGGCCATCAGGGAATATTGTACAACcacaataaaaagaataaaaggtTTAAGAATACATATATGTTTATATCTGCTATAAGGTCGGGCTTACCAAGCCTTAAGCTGACTCCACTGCAACCTCTAAGGTGCAACATTGACCTCTGCGGCCTAGACTCTGCTACCTACTGCGTATGCGGAAACAAGGCTTTCTCCTGTCCATATCTTTCAAAAGCACACTGTTTAGTTTTTGGAAGGTTGGGATACTCCTTGGGATACTGAATATTTGTCGAAGAGCTCCCCTCTTTTCCCTCACCATATCAATGCCAACAGTTCAGTCCCCACTGTATTTCAGATATGTATTAAACTCACTTTATTTGTTTtgggttttgtgtttttgtttaaaaagaacaggaaaaaaagaatcagATGTTTGCTACATGTCTGCCCACCCTGGATATGTAAGTTTATAGAACAGACAGGATGCCATTTCACCACCAGTGCCACCTTTTTGGGCGCTTCTGTTTGCCTCAGTGTTTTGGGTGCAATATGAAATCGAAGGGCAGAGGTGTAGATGTATTCATTGCCTCTGAGTGTCTGTGAGTTACCCCTGACTGAGCAATTCTCCATTGTTAGTTCCTAGCACTAGTGTGGTATGCTAGTAACCAAACAATTTGTAT
>XM_039788992.1
GTAACGTAGTCCGCGCACGTATTTTCATTCAAGAAGCATTTGAATAAGGAAGATGGCGGCTGCAGCAGTGGTTGAATTTCAGAGAGCCCAGTCTCTCATTAGCACGGATCGCGACGCCTCTATCGACATTCTACATTCAATAGTGAGGAGAGATGTCCAAGAGAATGATGAGGAAGCTGTCAGGGTTAAAGAACAGAGCATCCTGGAGCTGGGGACACTCCTGGCCAAGTCAGGACAGGCTGCAGAACTAGGGGGTCTGCTGAAATTTGTGAGGCCTTTTCTGATTTCCATCAGCAAGGCCAAGGCGGCCCGGCTGGTCCGCTCTCTCCTGGACCTCTTTCTTGACATGGAGGCAGCAACAGGGCAGGAGGTTGAGCTGTGTCTTGAATGCATTGAGTGGGCCAAGGCTGAGAAGAGAACCTTCCTACGACAGGCCCTGGAGGGTCGACTGATCTCACTCTATTTTGACACCAAAAGATACCAGGAGGCCTTGGCGCTTGGCACCCAGTTGCTCCAGGAGCTGAAAAAGATGGATGACAAAGCTCTTCTGGTAGAGGTTCAGCTGCTTGAAAGTAAGACGTACCACGCTCTCAGTAACCTGCCCAAGGCCCGCGCAGCCCTCACCTCAGCCAGGACCACCGCCAACGGCATTTACTGCCCTCCAAAGCTCCAGGCAGCTCTGGACATGCAGTCAGGGATCATCCACGCAGCAGAGGAGAAGGACTGGAAGACAGCCTACTCCTACTTCTTTGAGGCCTTCGAGGGCTACGACTCCATCGACAGCCCCAAAGCTGTCACAGCACTCAAATACATGCTCCTGTGCAAAATTGTCCTGAACTCACCAGAGGAGGTTCAAGGCCTGATCAGCGGGAAACTGGGCCTGCGATATGCCGGCCGACAGACAGATGCACTGAAATGTGTTGCCCAAGCCTGCAAGAACAGATCATTAGCAGACTTTGAAAAGGCCCTAACAGAGTACAGAGCGGAGCTGAGGGATGATCCCATCATCAACACTCACCTGGCCACGCTGTACGACAACCTGCTGGAACAAAACCTCATCCGTGTCATCGAACCCTTTTCCAGAGCACAGATAGAACACATATCGGGTCTAATGAAACTGTCAAAGgggGATGTTGAGAGGAAATTATCACAGATGATTCTGGACAAAAAGTTTCACGGAATCCTTGACCAAGGTGAAGGTGTCCTGATCATATTCGAAGAGCCCCCTGTGGACAAAACATACGAAGCAGCCTTGGAAACCATTCAGAACATGAGCAAAGTCGTGGATTCACTTTACAACAAAGCCAAGAAGCTGACATAGAGCAGATTGCCACGGCAGTGCGATGGAGGAACTGTGTGTTTGACCAGCGTGTGTAACATTTTAAGAAGGGGACAAGGGAGCGCAACAAAAAGTCCCACAAACTGCAACAAACAGGATTCCCCATCAaactccctcccccctctctcctttccCTCAATGGACAATTTCATCACTTCTCTTGTTTATTTTACCCTCTTTGATTTTGATATCTCTTCAGGATTCTGTATAACACTCAGCGGCCAAATCAGGCCATCAGGGAATATTGTACAACcacaataaaaagaataaaaggtTTAAGAATACATATATGTTTATATCTGCTATAAGGTCGGGCTTACCAAGCCTTAAGCTGACTCCACTGCAACCTCTAAGGTGCAACATTGACCTCTGCGGCCTAGACTCTGCTACCTACTGCGTATGCGGAAACAAGGCTTTCTCCTGTCCATATCTTTCAAAAGCACACTGTTTAGTTTTTGGAAGGTTGGGATACTCCTTGGGATACTGAATATTTGTCGAAGAGCTCCCCTCTTTTCCCTCACCATATCAATGCCAACAGTTCAGTCCCCACTGTATTTCAGATATGTATTAAACTCACTTTATTTGTTTtgggttttgtgtttttgtttaaaaagaacaggaaaaaaagaatcagATGTTTGCTACATGTCTGCCCACCCTGGATATGTAAGTTTATAGAACAGACAGGATGCCATTTCACCACCAGTGCCACCTTTTTGGGCGCTTCTGTTTGCCTCAGTGTTTTGGGTGCAATATGAAATCGAAGGGCAGAGGTGTAGATGTATTCATTGCCTCTGAGTGTCTGTGAGTTACCCCTGACTGAGCAATTCTCCATTGTTAGTTCCTAGCACTAGTGTGGTATGCTAGTAACCAAACAATTTGTATGGTTTTGATTTgggttttgatttttttttgttttgattttttttgtttaactcttataaagacattttcaaaataaatattttgtattttaaggaTTTTGTCTTGTCTCTTGCAAAAGAAATTGCTGATGGTAATTTGACGTGGTAACTTACCGGCCACTCAGCTATGATATTTGTTTTACAGTTTGAGGATTAGGAGACTACTAGGAGAGGATTTACATGTTGCAAAGTGTTTATTTGCAGTGTTTGACCCAGGAAATGTATACAAGAGTTAAGTGGAAGTATGTCTGCTAGAGGACAAGTCAAAGGGGCGATATCTAAGCAGTCACAGTTCTTAAACAGGaatcaacatgtttttttcaaattaccGAATTCACCCCAGAGTATCTTCCTCCTGCTGCTATATTTGTCACTAATTTGAAAGGAAACTCACATCAAAGGGCATTAAATCAGTTAAATGGA
>XM_039788993.1
GTAACGTAGTCCGCGCACGTATTTTCATTCAAGAAGCATTTGAATAAGGAAGATGGCGGCTGCAGCAGTGGTTGAATTTCAGAGAGCCCAGTCTCTCATTAGCACGGATCGCGACGCCTCTATCGACATTCTACATTCAATAGTGAGGAGAGATGTCCAAGAGAATGATGAGGAAGCTGTCAGGGTTAAAGAACAGAGCATCCTGGAGCTGGGGACACTCCTGGCCAAGTCAGGACAGGCTGCAGAACTAGGGGGTCTGCTGAAATTTGTGAGGCCTTTTCTGATTTCCATCAGCAAGGCCAAGGCGGCCCGGCTGGTCCGCTCTCTCCTGGACCTCTTTCTTGACATGGAGGCAGCAACAGGGCAGGAGGTTGAGCTGTGTCTTGAATGCATTGAGTGGGCCAAGGCTGAGAAGAGAACCTTCCTACGACAGGCCCTGGAGGGTCGACTGATCTCACTCTATTTTGACACCAAAAGATACCAGGAGGCCTTGGCGCTTGGCACCCAGTTGCTCCAGGAGCTGAAAAAGATGGATGACAAAGCTCTTCTGGTAGAGGTTCAGCTGCTTGAAAGTAAGACGTACCACGCTCTCAGTAACCTGCCCAAGGCCCGCGCAGCCCTCACCTCAGCCAGGACCACCGCCAACGGCATTTACTGCCCTCCAAAGCTCCAGGCAGCTCTGGACATGCAGTCAGGGATCATCCACGCAGCAGAGGAGAAGGACTGGAAGACAGCCTACTCCTACTTCTTTGAGGCCTTCGAGGGCTACGACTCCATCGACAGCCCCAAAGCTGTCACAGCACTCAAATACATGCTCCTGTGCAAAATTGTCCTGAACTCACCAGAGGAGGTTCAAGGCCTGATCAGCGGGAAACTGGGCCTGCGATATGCCGGCCGACAGACAGATGCACTGAAATGTGTTGCCCAAGCCTGCAAGAACAGATCATTAGCAGACTTTGAAAAGGCCCTAACAGAGTACAGAGCGGAGCTGAGGGATGATCCCATCATCAACACTCACCTGGCCACGCTGTACGACAACCTGCTGGAACAAAACCTCATCCGTGTCATCGAACCCTTTTCCAGAGCACAGATAGAACACATATCGGGTCTAATGAAACTGTCAAAGgggGATGTTGAGAGGAAATTATCACAGATGATTCTGGACAAAAAGTTTCACGGAATCCTTGACCAAGGTGAAGGTGTCCTGATCATATTCGAAGAGCCCCCTGTGGACAAAACATACGAAGCAGCCTTGGAAACCATTCAGAACATGAGCAAAGTCGTGGATTCACTTTACAACAAAGCCAAGAAGCTGACATAGATTGCCACGGCAGTGCGATGGAGGAACTGTGTGTTTGACCAGCGTGTGTAACATTTTAAGAAGGGGACAAGGGAGCGCAACAAAAAGTCCCACAAACTGCAACAAACAGGATTCCCCATCAaactccctcccccctctctcctttccCTCAATGGACAATTTCATCACTTCTCTTGTTTATTTTACCCTCTTTGATTTTGATATCTCTTCAGGATTCTGTATAACACTCAGCGGCCAAATCAGGCCATCAGGGAATATTGTACAACcacaataaaaagaataaaaggtTTAAGAATACATATATGTTTATATCTGCTATAAGGTCGGGCTTACCAAGCCTTAAGCTGACTCCACTGCAACCTCTAAGGTGCAACATTGACCTCTGCGGCCTAGACTCTGCTACCTACTGCGTATGCGGAAACAAGGCTTTCTCCTGTCCATATCTTTCAAAAGCACACTGTTTAGTTTTTGGAAGGTTGGGATACTCCTTGGGATACTGAATATTTGTCGAAGAGCTCCCCTCTTTTCCCTCACCATATCAATGCCAACAGTTCAGTCCCCACTGTATTTCAGATATGTATTAAACTCACTTTATTTGTTTtgggttttgtgtttttgtttaaaaagaacaggaaaaaaagaatcagATGTTTGCTACATGTCTGCCCACCCTGGATATGTAAGTTTATAGAACAGACAGGATGCCATTTCACCACCAGTGCCACCTTTTTGGGCGCTTCTGTTTGCCTCAGTGTTTTGGGTGCAATATGAAATCGAAGGGCAGAGGTGTAGATGTATTCATTGCCTCTGAGTGTCTGTGAGTTACCCCTGACTGAGCAATTCTCCATTGTTAGTTCCTAGCACTAGTGTGGTATGCTAGTAACCAAACAATTTGTATGGTTTTGATTTgggttttgatttttttttgttttgattttttttgtttaactcttataaagacattttcaaaataaatattttgtattttaaggaTTTTGTCTTGTCTCTTGCAAAAGAAATTGCTGATGGTAATTTGACGTGGTAACTTACCGGCCACTCAGCTATGATATTTGTTTTACAGTTTGAGGATTAGGAGACTACTAGGAGAGGATTTACATGTTGCAAAGTGTTTATTTGCAGTGTTTGACCCAGGAAATGTATACAAGAGTTAAGTGGAAGTATGTCTGCTAGAGGACAAGTCAAAGGGGCGATATCTAAGCAGTCACAGTTCTTAAACAGGaatcaacatgtttttttcaaattaccGAATTCACCCCAGAGTATCTTCCTCCTGCTGCTATATTTGTCACTAATTTGAAAGGAAACTCACATCAAAGGGCATTAAATCAGTTAAATGGA

Function

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 11B

GO: NA

KEGG:

id description
K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6

RNA

RNA id representative length rna type GC content exon number start site end site
TU285265 False 1405 lncRNA 0.43 6 6957395 6959615
XM_039788992.1 True 2685 mRNA 0.45 13 6951067 6960076
XM_039788993.1 False 2680 mRNA 0.45 13 6951067 6960076

Neighbor

gene id symbol gene type direction distance location
myo1d myo1d coding upstream 14258 6819158 ~ 6936809 (+)
pdk2a LOC104965721,LOC103354427 coding upstream 139638 6802667 ~ 6811429 (+)
osbpl7 osbpl7 coding upstream 301277 6632297 ~ 6649790 (+)
mrpl10 mrpl10,LOC102785498 coding upstream 319124 6627718 ~ 6631943 (+)
prr15lb prr15l coding upstream 329036 6615723 ~ 6622031 (+)
LOC120551313 LOC103367352,LOC101069418,LOC101470525,LOC106579324 coding downstream 1163 6961239 ~ 6993088 (+)
LOC120550851 thrab,LOC104942510,LOC101467005,LOC100702192,LOC104929205,LOC103366719 coding downstream 304770 7264846 ~ 7302723 (+)
LOC120550847 dhx8,LOC102782441 coding downstream 363582 7323658 ~ 7336099 (+)
LOC120550848 dhx8,LOC103381857 coding downstream 376945 7337021 ~ 7348751 (+)
psme3 psme3 coding downstream 711413 7671489 ~ 7679738 (+)
G210505 NA non-coding upstream 9835 6940371 ~ 6941232 (+)
G210449 NA non-coding upstream 138095 6720237 ~ 6812972 (+)
LOC120550868 NA non-coding upstream 288433 6659463 ~ 6662634 (+)
G210444 NA non-coding upstream 293910 6656529 ~ 6657157 (+)
G210431 NA non-coding upstream 354286 6595269 ~ 6596781 (+)
G210523 NA non-coding downstream 128 6960204 ~ 6960437 (+)
G210544 NA non-coding downstream 88388 7048464 ~ 7072516 (+)
LOC120550855 NA non-coding downstream 186345 7146421 ~ 7264824 (+)
G210542 NA non-coding downstream 349816 7309892 ~ 7311059 (+)
G210543 NA non-coding downstream 359175 7319251 ~ 7326748 (+)
G210266 msl1 other upstream 478912 6470656 ~ 6472155 (+)
stx4 stx4 other upstream 558489 6378136 ~ 6392578 (+)
LOC120551157 NA other upstream 680622 6219869 ~ 6270445 (+)
LOC120551158 NA other upstream 691408 5815236 ~ 6259659 (+)
kctd2 kctd2,LOC102796578,LOC107089511,LOC103371831,LOC103398851,LOC106521991 other upstream 858329 6083102 ~ 6092738 (+)
ormdl3 ormdl3,LOC102783025,LOC100707365,LOC102304808,LOC107387618,LOC106521946 other downstream 70742 7030818 ~ 7043208 (+)
LOC120551082 LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580 other downstream 1003293 7963369 ~ 7973216 (+)
dydc2 LOC101484997 other downstream 1097583 8057659 ~ 8062277 (+)
gngt2b NA other downstream 1536537 8496613 ~ 8497654 (+)
LOC120551795 NA other downstream 2082570 9042646 ~ 9050128 (+)

Expression


Co-expression Network