LOC120551082 (LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580)


Basic Information

Item Value
gene id LOC120551082
gene name LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 7963369 ~ 7973216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU285527
GGTGTGGTCATAGGTCCTTGTATAATTAGATTAGTCAGTGAGATTTTAGTATTTGAGATACTTTAGTCTCTAGCCTCTGGCCAAAAAAGCCTGACcattggagtttttttttttccccagacaCGTAATACAGCTATCTCTCGTATCAGGAGGACATGGAGGGAAGcactattttaaaaaaataaaaactacctGGTTTCTACTAacacaaagcttaatgctaattggtgaagtatccctttaagggaAAAGCAGTGATAAAGGTTGAAATGTCTAACAGAAACTCACAAAATAAGGAAGTAAGAGTAAGGCAGAGGGAATAAATTCACAATACTGAAGAAATGTTAAACCTACAGCTTTTAACTATActtcccacatttactttctcAGGAAACCTTTACAGACATGTCCTTCCGCAGTAAAGTGCATTCCTTACAAACAGATGCAGTAAAGTGTAAAATGTTCTGCAGTTAAATGAGTTTCTACAACCCATTTGACATAATAATTTAGGCTGATTTGATTAAAA
>XM_039788237.1
gtGACTCCTCCTCGACCAAATGCCTGCAGGCGAAGAAGACGACGGCAGTTCGTGTACCCGCTGCTCATCACAGTCTGTACTTAACTCCtgaattgatattttttataacttttttttatcagttagttgttgtttttttggggttgTGAAGAATCCCTGCGCGATCATGAATCCGCCCTGTGGAAGATGCAATAAGCCAGTTTATCCCACAGAAAAAATAAATTGCCTTGATAAGTATTGGCACAAAGGTTGTTTCAGCTGCGAGGTATGCAAGATGGCCCTGAGCATGACGACCTACAAAGGCTTTGAGAAGAAGCCTTACTGCAGTATgCATTACCCCAAAACCTCCTTCACCATAGTGGCTGACACCCCCGAGAATCTGCGTCTCAAACAACAGAGCATGCTCAACAGTCAGGCGCTCTATAAGGAGGACTTTGAAAAGAACAAGGGGAAAGGTTTCAGCGTGGTGGTCGACACTCCGGAGATGCAGAGAGTGAAGAAGACGCAAGACCAGATCAGTCACGCTCTTTACAAGGAGGACTTTGAAAAGAACAAGGGGAAAGGTTTCAGCGTGGTGGTCGACACTCCGGAGATGCAGAGAGTGAAGAAGACGCAAGACCAGATCAGTAACATAAAGTACCATGAAGATTTTGAGAAGAGCAGGATTCGAAGTGACGCACCTCCTCCTGAGAACAGACAAGactatGAGGAACAACCATCCAACCCTGAGAGATTCAGTCAGCCGGTCGGGCAGATGCGTCCTGCTGCTGTAGCACCACCTGGTGGAGGGAAACGTTACCAGGCTGTGTACAGCTATGCGGCAGCAGAGGCAGATGAAGTTTCTCTGCAGGAAGGCGATCTGCTCTTAGACGTGGAGCCGATAGATGAAGGGTGGATGTTCGGATGCAACCAGCGCACGGGGCAGCGAGGCATGCTCCCTGCCAACTATGTCCGACCCGTGTGAAACAAACCGACACAAGGTGGCCCTCCTCCAGCACGAGATGCCCTGCGAATCTGCTGTCACCACCAAATTTTCAGGCGTCTTCTCTGAATCAGCTTttgcaaatgaaaaataatattcCCCCAACTGGTTCTGCTTCTTCTTGccttccccccccccagagGTAGAGTTTTGAAATATAAGTAAAGAAGTAGTGGTGTGGTCATAGGTCCTTGTATAATTAGATTAGTCAGTGAGATTTTAGTATTTGAGATACTTTAGTCTCTAGCCTCTGGCCAAAAAAGCCTGACcattggagtttttttttttccccagacaCGTAATACAGCTATCTCTCGTATCAGGAGGACATGGAGGGAAGcactattttaaaaaaataaaaactacctGGTTTCTACTAacacaaagcttaatgctaattggtgaagtatccctttaagggaAAAGCAGTGATAAAGGTTGAAATGTCTAACAGAAACTCACAAAATAAGGAAGTAAGAGTAAGGCAGAGGGAATAAATTCACAATACTGAAGAAATGTTAAACCTACAGCTTTTAACTATActtcccacatttactttctcAGGAAACCTTTACAGACATGTCCTTCCGCAGTAAAGTGCATTCCTTACAAACAGATGCAGTAAAGTGTAAAATGTTCTGCAGTTAAATGAGTTTCTACAACCCATTTGACATAATAATTTAGGCTGATTTGATTAAAAGTTGAATatgtaa
>XM_039788238.1
GACTCCTCCTCGACCAAATGCCTGCAGGCGAAGAAGACGACGGCAGTTCGTGTACCCGCTGCTCATCACAGTCTGTACTTAACTCCtgaattgatattttttataacttttttttatcagttagttgttgtttttttggggttgTGAAGAATCCCTGCGCGATCATGAATCCGCCCTGTGGAAGATGCAATAAGCCAGTTTATCCCACAGAAAAAATAAATTGCCTTGATAAGTATTGGCACAAAGGTTGTTTCAGCTGCGAGGTATGCAAGATGGCCCTGAGCATGACGACCTACAAAGGCTTTGAGAAGAAGCCTTACTGCAGTATgCATTACCCCAAAACCTCCTTCACCATAGTGGCTGACACCCCCGAGAATCTGCGTCTCAAACAACAGAGCATGCTCAACAGTCAGGCTCTTTACAAGGAGGACTTTGAAAAGAACAAGGGGAAAGGTTTCAGCGTGGTGGTCGACACTCCGGAGATGCAGAGAGTGAAGAAGACGCAAGACCAGATCAGTAACATAAAGTACCATGAAGATTTTGAGAAGAGCAGGATTCGAAGTGACGCACCTCCTCCTGAGAACAGACAAGactatGAGGAACAACCATCCAACCCTGAGAGATTCAGTCAGCCGGTCGGGCAGATGCGTCCTGCTGCTGTAGCACCACCTGGTGGAGGGAAACGTTACCAGGCTGTGTACAGCTATGCGGCAGCAGAGGCAGATGAAGTTTCTCTGCAGGAAGGCGATCTGCTCTTAGACGTGGAGCCGATAGATGAAGGGTGGATGTTCGGATGCAACCAGCGCACGGGGCAGCGAGGCATGCTCCCTGCCAACTATGTCCGACCCGTGTGAAACAAACCGACACAAGGTGGCCCTCCTCCAGCACGAGATGCCCTGCGAATCTGCTGTCACCACCAAATTTTCAGGCGTCTTCTCTGAATCAGCTTttgcaaatgaaaaataatattcCCCCAACTGGTTCTGCTTCTTCTTGccttccccccccccagagGTAGAGTTTTGAAATATAAGTAAAGAAGTAGTGGTGTGGTCATAGGTCCTTGTATAATTAGATTAGTCAGTGAGATTTTAGTATTTGAGATACTTTAGTCTCTAGCCTCTGGCCAAAAAAGCCTGACcattggagtttttttttttccccagacaCGTAATACAGCTATCTCTCGTATCAGGAGGACATGGAGGGAAGcactattttaaaaaaataaaaactacctGGTTTCTACTAacacaaagcttaatgctaattggtgaagtatccctttaagggaAAAGCAGTGATAAAGGTTGAAATGTCTAACAGAAACTCACAAAATAAGGAAGTAAGAGTAAGGCAGAGGGAATAAATTCACAATACTGAAGAAATGTTAAACCTACAGCTTTTAACTATActtcccacatttactttctcAGGAAACCTTTACAGACATGTCCTTCCGCAGTAAAGTGCATTCCTTACAAACAGATGCAGTAAAGTGTAAAATGTTCTGCAGTTAAATGAGTTTCTACAACCCATTTGACATAATAATTTAGGCTGATTTGATTAAAAGTTGAATatgtaa

Function

NR:

description
PREDICTED: LIM and SH3 domain protein 1-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285527 False 526 lncRNA 0.35 1 7972678 7973203
XM_039788237.1 True 1695 mRNA 0.45 8 7963369 7973216
XM_039788238.1 False 1585 mRNA 0.44 7 7963371 7973216

Neighbor

gene id symbol gene type direction distance location
LOC120551080 LOC102778979,LOC100710248,LOC101487856 coding upstream 1864 7942284 ~ 7961505 (+)
gucy2g LOC104956250 coding upstream 40420 7909788 ~ 7922949 (+)
LOC120551809 NA coding upstream 260308 7698799 ~ 7703061 (+)
LOC120550600 NA coding upstream 265958 7692910 ~ 7697411 (+)
g6pc1a.2 g6pc coding upstream 272350 7688131 ~ 7691019 (+)
LOC120551492 NA coding downstream 44313 8017529 ~ 8018597 (+)
LOC120551506 pdzd7 coding downstream 94890 8068106 ~ 8081249 (+)
LOC120551092 NA coding downstream 109272 8082488 ~ 8085326 (+)
mrpl43 mrpl43 coding downstream 166522 8139738 ~ 8142103 (+)
mfsd13a mfsd13a coding downstream 213861 8187077 ~ 8198043 (+)
G210698 NA non-coding upstream 56490 7906168 ~ 7906879 (+)
G210697 NA non-coding upstream 57862 7903232 ~ 7905507 (+)
G210674 LOC104959753,LOC102294395 non-coding upstream 208985 7752598 ~ 7754384 (+)
G210669 NA non-coding upstream 226221 7732241 ~ 7737148 (+)
G210641 nbr1,LOC104945914 non-coding upstream 292388 7668710 ~ 7670981 (+)
G210721 NA non-coding downstream 8254 7981470 ~ 7982989 (+)
G210722 NA non-coding downstream 10872 7984088 ~ 7984414 (+)
G210723 NA non-coding downstream 12820 7986036 ~ 7987546 (+)
LOC120551264 NA non-coding downstream 37449 8010665 ~ 8012176 (+)
G210762 NA non-coding downstream 89651 8062867 ~ 8063101 (+)
ormdl3 ormdl3,LOC102783025,LOC100707365,LOC102304808,LOC107387618,LOC106521946 other upstream 920161 7030818 ~ 7043208 (+)
psmd11b LOC103367354,LOC102209997,LOC101470828,LOC100706559,LOC101174707 other upstream 1003293 6951067 ~ 6960076 (+)
G210266 msl1 other upstream 1491214 6470656 ~ 6472155 (+)
stx4 stx4 other upstream 1570791 6378136 ~ 6392578 (+)
LOC120551157 NA other upstream 1692924 6219869 ~ 6270445 (+)
dydc2 LOC101484997 other downstream 84443 8057659 ~ 8062277 (+)
gngt2b NA other downstream 523397 8496613 ~ 8497654 (+)
LOC120551795 NA other downstream 1069430 9042646 ~ 9050128 (+)
rpl38 NA other downstream 1594313 9567529 ~ 9576418 (+)
LOC120551355 LOC102295310,LOC103352803,LOC102796261,LOC107102520 other downstream 1865803 9839019 ~ 9849898 (+)

Expression


Co-expression Network