LOC120550588


Basic Information

Item Value
gene id LOC120550588
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 9452599 ~ 9456949 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU285944
CTGTTGTTCATAACAGCATGCGAGTGTCTGGAAGGGTGAAGGCGTGTGTTCCCTACTCTCCCCTAAGAAAAAGTCTACACTTTTCTCTCAAACGGACAGAGAGGCGACGCTAAAAGCCAAAAGATCTGACCTATCTCACGGTCTATCGTTAAGCCattctttgtttaaaaaaaaaaaagccaagcaTTATGGGAAGAGGTGGGAGCGAGATATGGGACGATGGAGAGCTGGTGGACACGGTGCAAACTCAACCtaagaaacaggaggagacgAAGACTAAAAGCTCAGAGAAAAGCTGTCCCAAGTGCTGCTTGCAGACAAGGAACTGTCTGATGAGCCCAGAGTGCGGCAGGGCCCTCCAGATCTCCAGCGTCGTCGCCATGTGTGGAATGTGCATCCGCATGTTCGTATaACCTAACCATGGACTTCAGGAGCAGCTTTTTCCAGGCTGCGCTGATTCTCAGCAACCCCCAGCACACTTCATGAGAGTCATGCCATATGGTTTTTTACTAATCTGAGATGAAATCCGGTCCCTTTAGCTCAACTTCATCAGCTGAAGTTCTCTTCATTCTCTATCCACAAATTCACTGCCTGTATATAAAACAAACTAGAAAGACAATCattatgaatgaatggatggatggatgtcaCTATGATCTACATGTCTTTGTGAAGGTTTTGGATGCTTTTTGATTGATCCCAATGCAGAggtttacatttatatttatggtTGAGcagtttttaataataataataataataatatatatattatggcgGTAGAGCTGATGTGTggagaaatatatatacagtatactcaACATCC
>XR_005637757.1
TAACGACCGACACCCTGTTGTTCATAACAGCATGCGAGTGTCTGGAAGGGTGAAGGCGTGTGTTCCCTACTCTCCCCTAAGAAAAAGTCTACACTTTTCTCTCAAACGGACAGAGAGGCGACGCTAAAAGCCAAAAGATCTGACCTATCTCACGGTCTATCGTTAAGCCattctttgtttaaaaaaaaaaaagccaagcaTTATGGGAAGAGGTGGGAGCGAGATATGGGACGATGGAGAGCTGGTGGACACGGTGCAAACTCAACCtaagaaacaggaggagacgAAGACTAAAAGCTCAGAGAAAAGCTGTCCCAAGTGCTGCTTGCAGACAAGGAACTGTCTGATGAGCCCAGAGTGCGGCAGGGCCCTCCAGATCTCCAGCGTCGTCGCCATGTGTGGAATGTGCATCCGCATGTTCGTATaACCTAACCATGGACTTCAGGAGCAGCTTTTTCCAGGCTGCGCTGATTCTCAGCAACCCCCAGCACACTTCATGAGAGTCATGCCATATGGTTTTTTACTAATCTGAGATGAAATCCGGTCCCTTTAGCTCAACTTCATCAGCTGAAGTTCTCTTCATTCTCTATCCACAAATTCACTGCCTGTATATAAAACAAACTAGAAAGACAATCattatgaatgaatggatggatggatgtcaCTATGATCTACATGTCTTTGTGAAGGTTTTGGATGCTTTTTGATTGATCCCAATGCAGAggtttacatttatatttatggtTGAGcagtttttaataataataataataataatatatatattatggcgGTAGAGCTGATGTGTggagaaatatatatacagtatactcaACATCCTATCTTCAAATATGAGTAAGATGACCAGATGgtagggaggggaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285944 False 826 lncRNA 0.43 3 9452613 9456903
XR_005637757.1 True 886 lncRNA 0.43 3 9452599 9456949

Neighbor

gene id symbol gene type direction distance location
hs3st3b1b hs3st3b1,LOC101472659,LOC100710426 coding upstream 612153 8819762 ~ 8840446 (+)
LOC120550936 LOC100695060,LOC101472949,LOC102791232,LOC102301473 coding upstream 636974 8777654 ~ 8815625 (+)
fbxw10 NA coding upstream 842935 8601846 ~ 8609664 (+)
trnag-ccc_1 NA coding upstream 851351 8601178 ~ 8601248 (+)
LOC120551063 ppp1r9b,LOC100709627,LOC102205956,LOC102789794 coding upstream 856584 8576662 ~ 8596015 (+)
ttyh2 ttyh2,LOC102794331 coding downstream 120441 9577390 ~ 9644745 (+)
kif19 kif19 coding downstream 188742 9645691 ~ 9690366 (+)
si:ch73-127m5.2 LOC104961255,LOC103352807,LOC101468102 coding downstream 234563 9691512 ~ 9696774 (+)
si:dkey-21e13.3 LOC103352816,LOC100696385,LOC108246058,LOC101467604,LOC102237836 coding downstream 239979 9696928 ~ 9703412 (+)
si:dkey-21c1.4 LOC102796569,LOC101161774 coding downstream 393774 9850723 ~ 9858242 (+)
G211022 NA non-coding upstream 30910 9421452 ~ 9421689 (+)
G210972 NA non-coding upstream 441211 9011012 ~ 9011388 (+)
G210968 NA non-coding upstream 472566 8979808 ~ 8980033 (+)
G210964 NA non-coding upstream 480900 8969083 ~ 8971699 (+)
G210938 NA non-coding upstream 778339 8674006 ~ 8674260 (+)
G211030 NA non-coding downstream 39062 9496011 ~ 9497523 (+)
G211084 NA non-coding downstream 371900 9828849 ~ 9830042 (+)
G211085 NA non-coding downstream 378111 9835060 ~ 9838125 (+)
G211130 NA non-coding downstream 469705 9926654 ~ 9984696 (+)
G211139 NA non-coding downstream 496926 9953875 ~ 9954681 (+)
LOC120551795 NA other upstream 402471 9042646 ~ 9050128 (+)
gngt2b NA other upstream 954945 8496613 ~ 8497654 (+)
dydc2 LOC101484997 other upstream 1390322 8057659 ~ 8062277 (+)
LOC120551082 LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580 other upstream 1479383 7963369 ~ 7973216 (+)
ormdl3 ormdl3,LOC102783025,LOC100707365,LOC102304808,LOC107387618,LOC106521946 other upstream 2409391 7030818 ~ 7043208 (+)
rpl38 NA other downstream 110580 9567529 ~ 9576418 (+)
LOC120551355 LOC102295310,LOC103352803,LOC102796261,LOC107102520 other downstream 382070 9839019 ~ 9849898 (+)
qki2 LOC104923420,LOC105926446,LOC103481625,LOC106939037,LOC106928957,LOC102292206,LOC100712570,LOC103376616,LOC106516672,LOC107090926,LOC103381788,LOC106519024 other downstream 427421 9884370 ~ 9898509 (+)
G211151 NA other downstream 596312 10053261 ~ 10062702 (+)
G211164 rnf157 other downstream 605836 10062785 ~ 10065126 (+)

Expression


Co-expression Network