rpl38


Basic Information

Item Value
gene id rpl38
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 9567529 ~ 9576418 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU285955
TTCCACCCCTTTTCATCCCCTCTCTGGCAGACTGACGTTCAGTCGGCTGACACAAGCAGCATGCCTCGCAAGATAGAAGAAATCAAAGATTTCCTGCTGACAGCCAGGAGGAAGGATGCCAAGTCCGTAAAGATCAAGAAGAACAAGGACAATGTTAAGTTCAAGGTGCGCTGCAGCAGGTACCTGTACACCCTGGTCATCACAGACAAGGAGAAGGCTGAGAAGCTGAAGCAGTCCCTGCCCCCAGGTCTGGCTGTGAAGGAGCTCAAGTAAATCCGTGATGTACAGATAATTGTAATAAAAATTGGAAAAAGAGTAATTTGTCTGGTTTTGTGTGCATTGTATTGTCATGCTGTAATGCgaacacaaaatatttaaaaaacttAATTATGAGTGTTTTCAGTCAGGGTAGTGTGGCCAGCTTGTTAAAATAGGTCATACATAGTTTTCTTCTTTCCATTTTTCCACCAGATGTCAGATTTGAGCTATAGTCAGACTGCAAAGTGTATAAAGAGAACCACCCTCAATTTCAGACATGTTAATGGTGTATGaaattgaaaaatatttttaaaaaatctggatatttacatttaatgggcactttaaaaaaaaaggctattAATGCGGTTGCTGTTTTAAGATTAAACTGCATTTCACCTTGCGCCAAC
>XM_039788399.1
TGAGTATCTAGGGGAAGATGGCCTGTGGACACGGGCAGACAGTGCTGTATAAAAGCTTTCCTAACCGGAAGTTCCACCCCTTTTCATCCCCTCTCTGGCAGACTGACGTTCAGTCGGCTGACACAAGCAGCATGCCTCGCAAGATAGAAGAAATCAAAGATTTCCTGCTGACAGCCAGGAGGAAGGATGCCAAGTCCGTAAAGATCAAGAAGAACAAGGACAATGTTAAGTTCAAGGTGCGCTGCAGCAGGTACCTGTACACCCTGGTCATCACAGACAAGGAGAAGGCTGAGAAGCTGAAGCAGTCCCTGCCCCCAGGTCTGGCTGTGAAGGAGCTCAAGTAAATCCGTGATGTACAGATAATTGTAATAAAAATTGGAAAAAGAGTAA
>XM_039788400.1
gcggttgttagTGCTGTATAAAAGCTTTCCTAACCGGAAGTTCCACCCCTTTTCATCCCCTCTCTGGCAGACTGACGTTCAGTCGGCTGACACAAGCAGCATGCCTCGCAAGATAGAAGAAATCAAAGATTTCCTGCTGACAGCCAGGAGGAAGGATGCCAAGTCCGTAAAGATCAAGAAGAACAAGGACAATGTTAAGTTCAAGGTGCGCTGCAGCAGGTACCTGTACACCCTGGTCATCACAGACAAGGAGAAGGCTGAGAAGCTGAAGCAGTCCCTGCCCCCAGGTCTGGCTGTGAAGGAGCTCAAGTAAATCCGTGATGTACAGATAATTGTAATAAAAATTGGAAAAAGAGTAA

Function

NR:

description
60S ribosomal protein L38

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0034463 90S preribosome assembly biological_process
GO:0001501 skeletal system development biological_process
GO:0001503 ossification biological_process
GO:0042474 middle ear morphogenesis biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0006417 regulation of translation biological_process
GO:0007605 sensory perception of sound biological_process
GO:0019083 viral transcription biological_process
GO:0048318 axial mesoderm development biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0033291 eukaryotic 80S initiation complex cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285955 True 668 TUCP 0.40 5 9573115 9576418
XM_039788399.1 False 390 mRNA 0.48 6 9567529 9576069
XM_039788400.1 False 359 mRNA 0.48 6 9570136 9576069

Neighbor

gene id symbol gene type direction distance location
hs3st3b1b hs3st3b1,LOC101472659,LOC100710426 coding upstream 727083 8819762 ~ 8840446 (+)
LOC120550936 LOC100695060,LOC101472949,LOC102791232,LOC102301473 coding upstream 751904 8777654 ~ 8815625 (+)
fbxw10 NA coding upstream 957865 8601846 ~ 8609664 (+)
trnag-ccc_1 NA coding upstream 966281 8601178 ~ 8601248 (+)
LOC120551063 ppp1r9b,LOC100709627,LOC102205956,LOC102789794 coding upstream 971514 8576662 ~ 8596015 (+)
ttyh2 ttyh2,LOC102794331 coding downstream 972 9577390 ~ 9644745 (+)
kif19 kif19 coding downstream 69273 9645691 ~ 9690366 (+)
si:ch73-127m5.2 LOC104961255,LOC103352807,LOC101468102 coding downstream 115094 9691512 ~ 9696774 (+)
si:dkey-21e13.3 LOC103352816,LOC100696385,LOC108246058,LOC101467604,LOC102237836 coding downstream 120510 9696928 ~ 9703412 (+)
si:dkey-21c1.4 LOC102796569,LOC101161774 coding downstream 274305 9850723 ~ 9858242 (+)
G211030 NA non-coding upstream 70006 9496011 ~ 9497523 (+)
LOC120550588 NA non-coding upstream 110580 9452599 ~ 9456949 (+)
G211022 NA non-coding upstream 145840 9421452 ~ 9421689 (+)
G210972 NA non-coding upstream 556141 9011012 ~ 9011388 (+)
G210968 NA non-coding upstream 587496 8979808 ~ 8980033 (+)
G211084 NA non-coding downstream 252431 9828849 ~ 9830042 (+)
G211085 NA non-coding downstream 258642 9835060 ~ 9838125 (+)
G211130 NA non-coding downstream 350236 9926654 ~ 9984696 (+)
G211139 NA non-coding downstream 377457 9953875 ~ 9954681 (+)
G211157 NA non-coding downstream 434463 10010881 ~ 10011167 (+)
LOC120551795 NA other upstream 517401 9042646 ~ 9050128 (+)
gngt2b NA other upstream 1069875 8496613 ~ 8497654 (+)
dydc2 LOC101484997 other upstream 1505252 8057659 ~ 8062277 (+)
LOC120551082 LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580 other upstream 1594313 7963369 ~ 7973216 (+)
ormdl3 ormdl3,LOC102783025,LOC100707365,LOC102304808,LOC107387618,LOC106521946 other upstream 2524321 7030818 ~ 7043208 (+)
LOC120551355 LOC102295310,LOC103352803,LOC102796261,LOC107102520 other downstream 262601 9839019 ~ 9849898 (+)
qki2 LOC104923420,LOC105926446,LOC103481625,LOC106939037,LOC106928957,LOC102292206,LOC100712570,LOC103376616,LOC106516672,LOC107090926,LOC103381788,LOC106519024 other downstream 307952 9884370 ~ 9898509 (+)
G211151 NA other downstream 476843 10053261 ~ 10062702 (+)
G211164 rnf157 other downstream 486367 10062785 ~ 10065126 (+)
socs3b LOC104933891,LOC103372658,LOC104967452 other downstream 713161 10289579 ~ 10329262 (+)

Expression


Co-expression Network