LOC120551355 (LOC102295310,LOC103352803,LOC102796261,LOC107102520)


Basic Information

Item Value
gene id LOC120551355
gene name LOC102295310,LOC103352803,LOC102796261,LOC107102520
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 9839019 ~ 9849898 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU286023
GGCCAATCTTTGTTAGAGGACAACTTCCAGGCACTGTTCAAATCTGTGCTTCTCTGCCAAATCACCCCATGCTTTCTTGGGACTGTTCACATCAACAGTCTGTAGTTTTTCTCCCAAAATAAACCTGTGAGCTTCAGTTTGCTTCCAGTTCTGGCtttgtatatactgtaatcTGTTGCCATGTAAATAATATTCAGGTTTATCTCTGTGTATGTAAATGGTTGTAGAAATGGAGCATTTTTCTATTCTGAATGTGTTTCAAATCACTGCTTTTCCAATGAAGATGACCTTTTTTGATTTTTAGatgtatttttgtgtatttttttcatcACCTTAAAATTCATTCCTGTGCCAAGTTTCATGCCACTCTAACCCTTATcaataaaa
>XM_039788749.1
CTTCCTGAGTTTAGGGAAGGGGCTTGGTCCCGTGCCTGCGCTCCGCGAACGCGCATCAAATTAGCATCGATGAAGTTTGTGCGAACATGGCGGATTTCCTGCCGACCAGGTCCGTGTTAAAAGTTTGTCTACCCGTCTGCTTGCTGAACAGCGGCGAGGTGGAACAGGTCCGAAAGTCAAAGGAGATCGACAGATGTCTCTCCCGGGAGAAAACATACGTGAAACGGCTGGTGAAGATCCTGCTGCTCGGCGCTGGCGAGAGCGGCAAGTCGACTTTCCTCAAACAAATGCGGATCATCCACGGCCAGGACTTCGACCAGCAAGCCCGAGAGGACTTCAGAGCCACAATTTACAGCAATGTTATCAAAGGTGTACGTGTGTTGGTAGATGCCCGGGAGAAGCTGCACATTCCGTGGGGTGACCCAGAAAACCAGAAGCATGGGGACAGCCTGATGGCGTTCAACACCCGGTCGGCTAAGATGGCCAACGGGCAGCTGGAGACGTCCGTCTTCTTGCAGTACCTGTCGGCCATCAAAGCTCTGTGGGAGGACTCGGGCATACAGAACGCCTATGATCGGCGCAGGGAGTTTCAGCTGGGTGAGTCAGTGAAGTATTTCTTGGATAATCTGGATAAGCTTGGCGAGCTGGATTATCTTCCCAGTCAACAGGATATCCTGCTGGCTCGTAAACCCACCAAGGGCATCCACGAGTATGACTTTGAAATCAAGAGTGTTCCCTTCAAGATGGTGGACGTGGGAGGGCAGCGGTCAGAGCGGAGGCGCTGGTTCGAGTGTTTCGACTCGGTCACCTCCATCCTCTTCCTCGTCTCCTCCTCTGAATACGACCAGGTGCTGATGGAGGACAGGCAGACCAACCGGCTGCGCGAGTCGCTCGACATCTTCGAGACCATCGTCAACAACCGCGTCTTCGTCAACGTTTCCATCATCCTCTTCCTCAACAAGACGGACCTGCTGGAGGAGAAAGTGAAGAGCGTTCCGCTCAAGGACTACTTTGCCGAGTACACTGGGCAGGAGCACAACCTGTCAGACGTCCAGGCGTTTATGGTGGAGTGCTTCCGGGACAAGAGACGCGACGCCACCCAGAAGCAACTGTACCACCACTTCACCACGGCCATCAACACGGAGAACATCAGGCTGGTGTTCCGGGACGTCAAGGACACCATCCTCCATGACAACCTCAAGCAGCTCATGCTCCAATGACCCCTGTCAACCTGTGAAAGTAGAGGACCTGAACGGGGACAAaccacccccccctcctcccccgcTCCTGACGAGGACTTGACGAGACCTTGAAGAATGAGATAGATGTCAGCATTCTTCTTCAGCCGTTTTTACTGTATATTAGTTTTTACACTCCTCTTTGAAGAGTTGGCCTATTGTTAGTTCAGAGTTTGGCAGGAGAACGAGTCAGTAGGGCAGTCTGTGGTTATAAAGAAAGACAAGCAGGCGGTTTTAAAGTTGGATAACATTTTATCACTTTGCTGCTTCGTCTAGAGACTCTCTCCTCTGGTCTGAGCGCCACCTTACAGCACAAGATTTGCTGCGGCTTTTCGACTCACAAGTTGCCGGTGCTGGCGCAAACCAGCATGACCTATTACAAACCGggcacatggtctctaaaccaGATACATAACTTGCCGAGCAACAAATACAGGAATTAGTTTGTTTAGACAACATGTAATAAGAGTTTAGATGGTCCAAGATCAGCTTTGCGCCAACATTGATTTGCCAGTCTGTGTACACAAGCATTGAATTAATCTAATCCAAAACCACTCCTTTAATTCTGCTGCATCCCTCTGGTGCTGCTTTGTGAACATAGTTTCTAAGCCCCTGTAGTTTGTAGAAGGGTTTACCAACTTGCGGATGATCTGGTGACTGCACGATTGTCCTCATTTTTTCTCATATTGCAGCACCATTTTCCTCCCTCTTCCAGTGCCAGTCGCAGAGCCATTTTCGCCGGGACAAGGACTAGCTCGTTGATTTCGAAAGCTCTCAGAACGGTTCAAATATTTGATCTGGTACCTTGTCTGTGGGAAAAATGCTAGAAAAGGGGCACAACCGCGAGACTGAACCTACAATACCTTTCCCTATATTGTCTTATGTAGACCTAATCACTGTTTAAATCCTGCATTTGTGCCTGTGCCTCTATACAATTAAAGCCAATCCTAGCTGCCTTCAACAGATAATTAAGATGCAAGTTGTCCCTTGCTTTTGGTTGTAGGACAAAATTACCTTAAATGGCACATTAGGCAGGTGTGTCAGCAAGTGAACATGCAGTCCACTGTTTTCTCAGGGTTGAATCAAAACCAGCATACATGCTGATGTCATTGTTGGTGAACTAACTGAATAATTGAATCTTTATCTGGGTGGCAGAGCGGCGAGTCTCAGCCAGGCCTCAGTACAGTTAGCTGGGTGGTGTTTGGTACTGTATCCTCCTGGCTTTGACCCCTGAAAGTTGACCCAGaggcccccccccctttcctctctctctttgttttatATCTTTGATTAGATGCCTTGTAAAGGGACCGACCTCCCCTGTTTGCCTGAATGATGAATGTCTGTTAATAGATGTACAGAGATTTGATTTTACTGTAACCAACATTGTAATAGTAAGCTGTAACTTGCTGTAAGCGTCCCTGAAAAAAAACCCTTGaaggtttgtttgtgttttacacGCCATCTTGTCCTGTttagtagtgtttttttttttttttatgaatttgttggggggaggggggagaattAGGGGAAAAAATGCTACTGTATTTTGTAGGGGGCCAATCTTTGTTAGAGGACAACTTCCAGGCACTGTTCAAATCTGTGCTTCTCTGCCAAATCACCCCATGCTTTCTTGGGACTGTTCACATCAACAGTCTGTAGTTTTTCTCCCAAAATAAACCTGTGAGCTTCAGTTTGCTTCCAGTTCTGGCtttgtatatactgtaatcTGTTGCCATGTAAATAATATTCAGGTTTATCTCTGTGTATGTAAATGGTTGTAGAAATGGAGCATTTTTCTATTCTGAATGTGTTTCAAATCACTGCTTTTCCAATGAAGATGACCTTTTTTGATTTTTAGatgtatttttgtgtatttttttcatcACCTTAAAATTCATTCCTGTGCCAAGTTTCATGCCACTCTAACCCTTATcaataaaatacacatttctAATGAAA

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit alpha-13-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04639 GNA13; guanine nucleotide-binding protein subunit alpha-13

RNA

RNA id representative length rna type GC content exon number start site end site
TU286023 False 387 lncRNA 0.36 1 9849494 9849880
XM_039788749.1 True 3203 mRNA 0.47 5 9839019 9849898

Neighbor

gene id symbol gene type direction distance location
si:dkey-21e13.3 LOC103352816,LOC100696385,LOC108246058,LOC101467604,LOC102237836 coding upstream 135607 9696928 ~ 9703412 (+)
si:ch73-127m5.2 LOC104961255,LOC103352807,LOC101468102 coding upstream 142245 9691512 ~ 9696774 (+)
kif19 kif19 coding upstream 148653 9645691 ~ 9690366 (+)
ttyh2 ttyh2,LOC102794331 coding upstream 194274 9577390 ~ 9644745 (+)
hs3st3b1b hs3st3b1,LOC101472659,LOC100710426 coding upstream 998573 8819762 ~ 8840446 (+)
si:dkey-21c1.4 LOC102796569,LOC101161774 coding downstream 825 9850723 ~ 9858242 (+)
tbcc tbcc,LOC102796566 coding downstream 15901 9865799 ~ 9870812 (+)
prph2a prph2,LOC101069021 coding downstream 22231 9872129 ~ 9879074 (+)
timm23a timm23 coding downstream 54232 9904130 ~ 9907939 (+)
syt15 LOC102290952 coding downstream 68223 9918121 ~ 9923067 (+)
G211085 NA non-coding upstream 894 9835060 ~ 9838125 (+)
G211084 NA non-coding upstream 8977 9828849 ~ 9830042 (+)
G211030 NA non-coding upstream 341496 9496011 ~ 9497523 (+)
LOC120550588 NA non-coding upstream 382070 9452599 ~ 9456949 (+)
G211022 NA non-coding upstream 417330 9421452 ~ 9421689 (+)
G211130 NA non-coding downstream 76756 9926654 ~ 9984696 (+)
G211139 NA non-coding downstream 103977 9953875 ~ 9954681 (+)
G211157 NA non-coding downstream 160983 10010881 ~ 10011167 (+)
LOC120551238 NA non-coding downstream 286027 10135925 ~ 10136650 (+)
G211175 NA non-coding downstream 289883 10139781 ~ 10140042 (+)
rpl38 NA other upstream 262601 9567529 ~ 9576418 (+)
LOC120551795 NA other upstream 788891 9042646 ~ 9050128 (+)
gngt2b NA other upstream 1341365 8496613 ~ 8497654 (+)
dydc2 LOC101484997 other upstream 1776742 8057659 ~ 8062277 (+)
LOC120551082 LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580 other upstream 1865803 7963369 ~ 7973216 (+)
qki2 LOC104923420,LOC105926446,LOC103481625,LOC106939037,LOC106928957,LOC102292206,LOC100712570,LOC103376616,LOC106516672,LOC107090926,LOC103381788,LOC106519024 other downstream 34472 9884370 ~ 9898509 (+)
G211151 NA other downstream 203363 10053261 ~ 10062702 (+)
G211164 rnf157 other downstream 212887 10062785 ~ 10065126 (+)
socs3b LOC104933891,LOC103372658,LOC104967452 other downstream 439681 10289579 ~ 10329262 (+)
G211301 LOC108248045,LOC103381519 other downstream 599781 10449679 ~ 10531279 (+)

Expression


Co-expression Network