G211354 (six3,LOC104922638,LOC103370415)


Basic Information

Item Value
gene id G211354
gene name six3,LOC104922638,LOC103370415
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10801340 ~ 10803972 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU286436
AtattaaataattttatttacataaaaatacCCAAACATTTATTCTGCATCAAATTGAACATAAAGTACAACAAAGTATCACACATAAACTGCACAGTGAACTCTGTGAACTTTAAATAAAGTACAAGTGAAGGTAAAGAAACCAAAAAATGTCATGAACATATGAACAAGGTAGGCTTCAGTGCATATTGATTGTCTACAACAGTGGACATCCAGGGGTTGTATAAAGAAAGAACtagtttcataaaaaaaaaaataataataataataataacaatgacaCATAATTAGAGAAAATTAGGGTGATTAGCTCACTGGCAGGTTTCAGTCTGTAAATGTCCTCCCATGTGGGGGTCCCACTCCCTGGGTTAAAGTCCAACAGGGGTCCACGGCTTGATGTCGGTATAATCAGGTTGATGGTGTAAGCTGGGTCAACAGATGTGCACGTCACCATCCAGTGATGTAGTTCAAAACCAAAAATGTGGGTCTGATCTGCAGctagtgattaaaaaaataataatacagaaAACCAGCCTCATAGACAAAAATCAATCATATTTTCAggaaacaaaagaacaaaaaaatcttCATGTAACCTCTAACATTATCGGTTTGGTGGGCTGGGGTAACATTTAGgatgaagctttttttttttatgccctGAACATTTATTGCAACCCAAACCCTGATCAGCCTTGTGTACACATGGCTACATCATCCTCCTCTCTACGGTAATCCACGACTGACCACCATAGGCCCCTGAAGGTCCATTTCATAATTTAGTCTCAAACATCCAAGTCAGAGTCACTGTCCGTTACTGAAAGCAGAGTTTCTCTATCTGCGCGCTCCCCGCTTTCGTCTGGACTGCACTCTCCTCCGCTAAGTGACCGCGCACCGTCGGGACACATCCGGTGGTGCTGCAACCTGTTTTTGGCTGCTGCCGCCCGGTCTCTCTGTCTCCGGTTTTTGAACCAGTTCCCAACTTGAGTCGGTGTGAGTCCGGTTGCGTGCGCCAGCTCCCGCTTCTTCCCGGGGTTCGGGTACGGGTCCTGCAGGTACCACTCTCTTAGCAGTCCCCGCGTGCGCTCTTTGAAGCAGTGCGTCTTCTGCTCACCGTCCCAGATTGTCTTCGGTAACGGGAACTTCTTCCTCACGCGGTACTTGTCAACAGGTCCGAGCGGTCGCCCCCGGAGCTTCTCTGCCTCCCGGTAGTGAGCTTCGAGCCACATCGCCTGCAGTTTACCGTGCGAGTCGCGCGTAAAGCGGTGCGTCTCCAGGATGTGATAAAGCTCGCGGAAACTTCCCGTGTGGTAGGCCACCACGGCGCGAGCCCGCTGCACGGACTCGTGCGCAGAGATGGAGTCGCGACCGTCTGCGGTCACCGGGAGTGACCAGAGGAAGCGGGCCAGCCGCTCGATGTCTCCGGTCTCCTCCAGAGTCTCGCAGACGCTGGCGATCTGCGCCGCGGAGAAACACAACCCAGGGAGAGCCAGGGGAGGACAGGCGGAAGGATGGTCCTCCGGGGACCGGGAGCGGGACAGAATAGGAGGCCCATCGGCGAAGTGTGGCAGGAGGATACGGGAGGCTGAGAAAACGTCGAGCGGCGATCGGAACACCATCTGGATGACTGAGCGAAACCAGAGAGGAGACGAAGTGTGTCTCGGAAACGGTCTGACAGAAATCTGCTGAAGTTTGACTCTTTAGCTCACCTGGGAGTCAGGGAGGGATCCTTAATCTGACTCCTTATTGGACGGACACCCTGGAGCTGATGTGGGGTTGTCATGGCAGCACTGTCAATCAAACGCCGAGGATTTATCTCCCTCCTTTTAACAAGCTGGACACAGAAAGTCTCCCTCAAATGACTCTCTATTGTGAACCATTTCATTAAACAGGAAGAAGAATAAAAGTTAACCGAAGTGCCACTTAGCCTACTAGTTTTATTTTTCCGGAGTTCTAAAACGAGTGAAAGTGCTAGAAACATATCAGGCGGTAAATTAGAATCAGTACGCCTACAAGATGAC

Function

symbol description
six3 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and transcription corepressor binding activity. Involved in eye development; forebrain dorsal/ventral pattern formation; and negative regulation of transcription, DNA-templated. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus. Implicated in holoprosencephaly and holoprosencephaly 2.

NR:

description
PREDICTED: homeobox protein SIX3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286436 True 2021 TUCP 0.49 2 10801340 10803972

Neighbor

gene id symbol gene type direction distance location
ldb3b ldb3,LOC103370407,LOC100707522,LOC108248204,LOC101168991,LOC106516631 coding upstream 100576 10687293 ~ 10700764 (+)
opn4b opn4,LOC103371172 coding upstream 118709 10658853 ~ 10682631 (+)
myoz1b NA coding upstream 240010 10552741 ~ 10561330 (+)
synpo2lb LOC104964751 coding upstream 251729 10537342 ~ 10549611 (+)
LOC120551199 NA coding upstream 295580 10499483 ~ 10505760 (+)
msh2 msh2 coding downstream 148215 10952187 ~ 10962659 (+)
LOC120550886 LOC103359664,LOC101486147,LOC102308455 coding downstream 317239 11121211 ~ 11141363 (+)
LOC120550888 LOC104941389 coding downstream 339412 11143384 ~ 11147383 (+)
LOC120550580 NA coding downstream 438627 11242599 ~ 11244396 (+)
c21h10orf90 NA coding downstream 672992 11476964 ~ 11494645 (+)
G211327 NA non-coding upstream 118093 10683043 ~ 10683247 (+)
G211321 NA non-coding upstream 189441 10597227 ~ 10611899 (+)
G211323 NA non-coding upstream 213488 10572625 ~ 10587852 (+)
G211306 NA non-coding upstream 293016 10506326 ~ 10508324 (+)
G211256 NA non-coding upstream 556525 10243617 ~ 10244815 (+)
G211356 NA non-coding downstream 10772 10814744 ~ 10815203 (+)
G211349 NA non-coding downstream 13297 10817269 ~ 10818275 (+)
G211370 mta3 non-coding downstream 74945 10878917 ~ 10885951 (+)
LOC120550775 NA non-coding downstream 133629 10937601 ~ 10944265 (+)
LOC120550777 NA non-coding downstream 140957 10944929 ~ 10946643 (+)
G211336 NA other upstream 75781 10723533 ~ 10725559 (+)
sncgb snca,LOC103381528,LOC104922219,LOC103370408,LOC106948771,LOC104951044,LOC106904390 other upstream 85986 10702966 ~ 10715354 (+)
usp54b usp54,LOC102211175,LOC101471098,LOC102784247,LOC103371171,LOC103145175,LOC103381525 other upstream 179928 10564221 ~ 10621412 (+)
G211301 LOC108248045,LOC103381519 other upstream 270061 10449679 ~ 10531279 (+)
socs3b LOC104933891,LOC103372658,LOC104967452 other upstream 472078 10289579 ~ 10329262 (+)
kcng3 LOC104951029,LOC104923031 other downstream 15086 10819058 ~ 10912098 (+)
LOC120551799 LOC104923123,LOC104951035,LOC103481543,LOC106904276 other downstream 98722 10902694 ~ 10907344 (+)
cript cript other downstream 118451 10922423 ~ 10927226 (+)
chac2 chac2,LOC102792373 other downstream 269505 11073477 ~ 11078007 (+)
LOC120550876 fam196a other downstream 559383 11363355 ~ 11400578 (+)

Expression


Co-expression Network