G211370 (mta3)


Basic Information

Item Value
gene id G211370
gene name mta3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10878917 ~ 10885951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU286456
CGTTTGCAGAGCTCCGCAAGCTCGTGGTCTGCAAGTACTACTTTTATTTACCCGCCACTGTGGCTGGTAGGTTGAGCAAATTAAAATTTCCatgactggtgtgtgtgtgtgtttgtgtgtctttgtacagTACCTGATGTGTGTCGCAGGTAGACTCTCATACTGCCGGGAGAGGAAGAGCTCTCTGTGGCGAAGCtggtgtttctgtttttctgttagGTCTGTCTCTGTCGggctctccttctcttcttccaACTCCTCTGCAAAAGGCACACTTGCATGTTTGTCTGCAAGCTGGATGAGGCTGTGGGAGATGTCTCGTCTTCTGTAGAAACAAACCACCTTGGCCTCCACGTTCCCACTGGCC

Function

symbol description
mta3 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Is expressed in blastodisc; central nervous system; and intermediate cell mass of mesoderm. Orthologous to human MTA3 (metastasis associated 1 family member 3).

NR:

description
PREDICTED: metastasis-associated protein MTA3 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286456 True 367 lncRNA 0.50 2 10878917 10885951

Neighbor

gene id symbol gene type direction distance location
ldb3b ldb3,LOC103370407,LOC100707522,LOC108248204,LOC101168991,LOC106516631 coding upstream 178153 10687293 ~ 10700764 (+)
opn4b opn4,LOC103371172 coding upstream 196286 10658853 ~ 10682631 (+)
myoz1b NA coding upstream 317587 10552741 ~ 10561330 (+)
synpo2lb LOC104964751 coding upstream 329306 10537342 ~ 10549611 (+)
LOC120551199 NA coding upstream 373157 10499483 ~ 10505760 (+)
msh2 msh2 coding downstream 66236 10952187 ~ 10962659 (+)
LOC120550886 LOC103359664,LOC101486147,LOC102308455 coding downstream 235260 11121211 ~ 11141363 (+)
LOC120550888 LOC104941389 coding downstream 257433 11143384 ~ 11147383 (+)
LOC120550580 NA coding downstream 356648 11242599 ~ 11244396 (+)
c21h10orf90 NA coding downstream 591013 11476964 ~ 11494645 (+)
G211349 NA non-coding upstream 60642 10817269 ~ 10818275 (+)
G211356 NA non-coding upstream 63714 10814744 ~ 10815203 (+)
G211327 NA non-coding upstream 195670 10683043 ~ 10683247 (+)
G211321 NA non-coding upstream 267018 10597227 ~ 10611899 (+)
G211323 NA non-coding upstream 291065 10572625 ~ 10587852 (+)
LOC120550775 NA non-coding downstream 51650 10937601 ~ 10944265 (+)
LOC120550777 NA non-coding downstream 58978 10944929 ~ 10946643 (+)
G211417 NA non-coding downstream 194164 11080115 ~ 11080410 (+)
LOC120550877 NA non-coding downstream 567270 11453221 ~ 11457561 (+)
G211665 NA non-coding downstream 839190 11725141 ~ 11727426 (+)
G211354 six3,LOC104922638,LOC103370415 other upstream 74945 10801340 ~ 10803972 (+)
G211336 NA other upstream 153358 10723533 ~ 10725559 (+)
sncgb snca,LOC103381528,LOC104922219,LOC103370408,LOC106948771,LOC104951044,LOC106904390 other upstream 163563 10702966 ~ 10715354 (+)
usp54b usp54,LOC102211175,LOC101471098,LOC102784247,LOC103371171,LOC103145175,LOC103381525 other upstream 257505 10564221 ~ 10621412 (+)
G211301 LOC108248045,LOC103381519 other upstream 347638 10449679 ~ 10531279 (+)
LOC120551799 LOC104923123,LOC104951035,LOC103481543,LOC106904276 other downstream 16743 10902694 ~ 10907344 (+)
cript cript other downstream 36472 10922423 ~ 10927226 (+)
chac2 chac2,LOC102792373 other downstream 187526 11073477 ~ 11078007 (+)
LOC120550876 fam196a other downstream 477404 11363355 ~ 11400578 (+)
G211777 NA other downstream 1201734 12087685 ~ 12088135 (+)

Expression


Co-expression Network