LOC120550877


Basic Information

Item Value
gene id LOC120550877
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11453221 ~ 11457561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU286820
CAAACAGCTCAGATAGAGACATAAAGCATCTTATTTCATCAGAAAATGAAAGAGTGCCCGCGTGATCACTGCAAATGAGACTAATAGGTCTCATATCAAACAAATGGGAGCGCAGAGGACTGGAGAGATTTGCACTAGGCAAGAGGTGCAatcacaaaatgaacacaaatgACACCCTGGGAAGATGCTGAGTAAATGACAACCATCAAACACAATCCTGACATGTGAGGCAACGGCGGTGCAATTTAACACACAGGAACCATGATGATTCTTGTCACGTGGGGGTTAAAATGACTGCTCTGATTACTTATAAACCGGTATTTGCATACCCAAGAGTAAGCTGATGTCAATTTGGAAGCGGTGAGGAAGAGAAAATCCATCAGAGGACGAAGAGGATGAGGAAGTGGACCATATTCTCCCTGGAGTGTGGCACGCAAATGATTTTTTGGGAAACGTGATAAACAGCGGCATCATTTGGTGTTTACCGTCCTGATGAGCCCTGCTGGTAGTGAGATGGAGCTGGCTGCAGCGAGCTCTGCTGCAGAGCTGGGATCTGCCAAGTTTTGTTAGGATAACGGGAGCAACATTGGCCTGGGGCGGGCAGAAGGACCTGCTGTTTCTAACTGCATCCCTGCACTGTCTGCAGAATCAAAGTACAGTAACTCCTCTGTCGGACTCCATTGCCACGACAATGACACACAACCAAGAAACTCAAAATTCATTGTGTTTCCTTGAGGTCTAACAAACGTGTttgaatgcatttccttcctcataaaacatttgcaacgCCCTTATCAAATCCTGCATCGTTTACTTCCTTTTTCACCAGCTTGCAGTCTTCTTCTACCCTGCCTTTGCATGTCTTGGCATTACCGGCTCCTAAAGTTCAGTGGAATAATGAGAAAACATTGGTAGGAATGTGAATCACATCACACGCAAGGTCAAACGctccacagggcacctttaatatttcAGAGATTAAAAAGCTTAGAGCTTCCAATCAAAATCTTGATATATTCTGATGCTGATTTTTCCAGATACAGTACTATGTATtaagcctggttgacaccagacccttctcagttgtaactgagagtgggtctgagcaagcttcattcacagcccatttccaaaggggcgtcaccaacggacgctgctcaaatgcctgtgggcgcaattggatagtccttcaaccaatcagatgaacgatccgggtgacgtagcagcgacagcggcatcaacgggttgctgcgcttcgatGGCCGTCATGTTGGATgtaaaaagctgcttgccgtcgctgctctattgtcatcgtgtaaagcccaccTTAACGGTtgtgatttggaaaaattggaaatgggctcttggccagactgacttgcagagggttttcccaggctactaTGTACTACGATATTTAGCTAAATGGTTACCTGAGTGTTTGGTACATTATTAAAGTTTAAGATGCCAACCATAAACCTTAAGGTCCTCAGTTCGAGTCTAGCCAGGGAGCTtattctccatctctctcccctcattTCCTTTCATCTCTCTATTGCCAACTCtatattaaaatgcaaacaaaaagcCCCAAATGACTTATTTACTTTAATACTTAATACCAATTTATCCTTCAGGCTTTACTTTAGCCTACAGTACAGgcaaaaagtttggac
>XR_005637798.1
CTCAGATAGAGACATAAAGCATCTTATTTCATCAGAAAATGAAAGAGTGCCCGCGTGATCACTGCAAATGAGACTAATAGGTCTCATATCAAACAAATGGGAGCGCAGAGGACTGGAGAGATTTGCACTAGGCAAGAGGTGCAatcacaaaatgaacacaaatgACACCCTGGGAAGATGCTGAGTAAATGACAACCATCAAACACAATCCTGACATGTGAGGCAACGGCGGTGCAATTTAACACACAGGAACCATGATGATTCTTGTCACGTGGGGGTTAAAATGACTGCTCTGATTACTTATAAACCGGTATTTGCATACCCAAGAGTAAGCTGATGTCAATTTGGAAGCGGTGAGGAAGAGAAAATCCATCAGAGGACGAAGAGGATGAGGAAGTGGACCATATTCTCCCTGGAGTGTGGCACGCAAATGATTTTTTGGGAAACGTGATAAACAGCGGCATCATTTGGTGTTTACCGTCCTGATGAGCCCTGCTGGTAGTGAGATGGAGCTGGCTGCAGCGAGCTCTGCTGCAGAGCTGGGATCTGCCAAGTTTTGTTAGGATAACGGGAGCAACATTGGCCTGGGGCGGGCAGAAGGACCTGCTGTTTCTAACTGCATCCCTGCACTGTCTGCAGAATCAAAGTACAGTAACTCCTCTGTCGGACTCCATTGCCACGACAATGACACACAACCAAGAAACTCAAAATTCATTGTGTTTCCTTGAGGTCTAACAAACGTGTttgaatgcatttccttcctcataaaacatttgcaacgCCCTTATCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286820 True 1676 lncRNA 0.45 2 11453221 11457561
XR_005637798.1 False 792 lncRNA 0.46 2 11453228 11456684

Neighbor

gene id symbol gene type direction distance location
LOC120550580 NA coding upstream 208825 11242599 ~ 11244396 (+)
LOC120550888 LOC104941389 coding upstream 305838 11143384 ~ 11147383 (+)
LOC120550886 LOC103359664,LOC101486147,LOC102308455 coding upstream 311858 11121211 ~ 11141363 (+)
msh2 msh2 coding upstream 490562 10952187 ~ 10962659 (+)
ldb3b ldb3,LOC103370407,LOC100707522,LOC108248204,LOC101168991,LOC106516631 coding upstream 752457 10687293 ~ 10700764 (+)
c21h10orf90 NA coding downstream 19403 11476964 ~ 11494645 (+)
LOC120550601 adam12,LOC104959042 coding downstream 39021 11496582 ~ 11569280 (+)
dhx32a dhx32 coding downstream 113156 11570717 ~ 11577632 (+)
uros uros coding downstream 121644 11579205 ~ 11583114 (+)
mmp21 mmp21 coding downstream 125628 11583189 ~ 11587630 (+)
G211417 NA non-coding upstream 372811 11080115 ~ 11080410 (+)
LOC120550777 NA non-coding upstream 506578 10944929 ~ 10946643 (+)
LOC120550775 NA non-coding upstream 508956 10937601 ~ 10944265 (+)
G211370 mta3 non-coding upstream 567270 10878917 ~ 10885951 (+)
G211349 NA non-coding upstream 634946 10817269 ~ 10818275 (+)
G211665 NA non-coding downstream 267580 11725141 ~ 11727426 (+)
G211666 zranb1,LOC104942016 non-coding downstream 276066 11733627 ~ 11735251 (+)
G211706 NA non-coding downstream 364243 11821804 ~ 11822046 (+)
G211710 NA non-coding downstream 381440 11839001 ~ 11839311 (+)
G211711 NA non-coding downstream 381983 11839544 ~ 11839743 (+)
LOC120550876 fam196a other upstream 52643 11363355 ~ 11400578 (+)
chac2 chac2,LOC102792373 other upstream 375214 11073477 ~ 11078007 (+)
cript cript other upstream 525995 10922423 ~ 10927226 (+)
kcng3 LOC104951029,LOC104923031 other upstream 541123 10819058 ~ 10912098 (+)
LOC120551799 LOC104923123,LOC104951035,LOC103481543,LOC106904276 other upstream 545877 10902694 ~ 10907344 (+)
G211777 NA other downstream 630124 12087685 ~ 12088135 (+)
LOC120551485 adamts14,LOC103367006 other downstream 1093016 12550577 ~ 12599464 (+)
LOC120551603 zmiz1,LOC102192508,LOC102310819 other downstream 1263274 12720835 ~ 12827609 (+)
LOC120550681 comtd1 other downstream 1702415 13159976 ~ 13166392 (+)
zgc:153981 LOC104943448,LOC101465490,LOC103355374,LOC100701713,LOC104930939 other downstream 1723434 13180995 ~ 13184797 (+)

Expression


Co-expression Network