G211666 (zranb1,LOC104942016)


Basic Information

Item Value
gene id G211666
gene name zranb1,LOC104942016
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11733627 ~ 11735251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU286881
GCACATGCATTGAGGAACAGCCAGTCTGTTTTCCTCATTCGATTTCTAATCTGCTTTAGCTTCTTGAAGTCAACCTCTTGCTCCTCTTTGCTGCTCATGGCTCCAGCTGCGAGCTCTATCCTCTGGAAGTCCATTTTGACATTGTCTTCCCTCTTGGGCATAGGAGGGGACCTCCTTCGGCCCTGGCCTCCACTGCAACTGCCCCTCCACGGAGCCCTGTCCTGCTCATTGATCATGGGTGTTGGCTCTGCAGACTCAGCCAGCTCTATGGCTTCCTGGTTGCTGGGCTTGGGATGGTCACAAACCACACACTTTGTAGTCGTGGGCCAGTTCTGGTAAGTGCAAACTGTGCATGTCCAGTGCTGCTGATGAGTGTTAAGTCTGTTTCTGTCATTGTACTCCTCACAGGTATCCACAGGGGAGTGGAGCGCAGGACGACAGCCTGCATTGGAGCCTGAAGTCTGGGGGGACTCGGTGGGGCTGCTGGTCCTCGTGCGCTGACACAGGCACTGTGTGCAGCGAAGTGCTCGGGGCCAGTTCAGGTAGGTGCACATCTGGCAGGACCACTTATTGGCAATCTCAGCTATGCCAGCTGACCTGACTCTTGGCCTAGCACTGGAGTCAGGGCAGATGAGGAGGTTGCTGACACTCCCAGTTCTGGGAGGGTCCCACTCCAGACTGGGGTCCAGATCAGGGCTGTTCTTGTAAGGTTCCTCTGTGATAATGGGACCCCTCGACTTTGGTGCACGGCACATAGTGCACTTGACTGCAGATGGCCAGTTTTCATAGGTGCAGTAGTCACAGGCCCACTTTACCTTCTGTTCTGTCATTGTGGATCACTTTGGCTGGTCAAACTGTGGTGATAAACCTTGACAAAGCCTCTACTCCTTGAATCATGGTATAAATATGCGACAGTCCATGGTTTACACTGGCTCCGTGTTGTTTAATGGCGGCGACAGC

Function

symbol description
zranb1 Enables K63-linked polyubiquitin modification-dependent protein binding activity and thiol-dependent deubiquitinase. Involved in several processes, including positive regulation of Wnt signaling pathway; protein deubiquitination; and regulation of cell morphogenesis. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: ubiquitin thioesterase ZRANB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU286881 True 960 lncRNA 0.54 2 11733627 11735251

Neighbor

gene id symbol gene type direction distance location
ctbp2l ctbp2,LOC104925227,LOC100698659,LOC105926449,LOC107387783,LOC102290675,LOC103381637,LOC103150461,LOC101467118,LOC102209184,LOC102797539,LOC103481571 coding upstream 15184 11620641 ~ 11718443 (+)
mmp21 mmp21 coding upstream 145997 11583189 ~ 11587630 (+)
uros uros coding upstream 150513 11579205 ~ 11583114 (+)
dhx32a dhx32 coding upstream 155995 11570717 ~ 11577632 (+)
LOC120550601 adam12,LOC104959042 coding upstream 164347 11496582 ~ 11569280 (+)
hpdl hpdl coding downstream 1726 11736977 ~ 11739509 (+)
fam53b fam53b,LOC104942014 coding downstream 7956 11743207 ~ 11758918 (+)
LOC120551790 hnrnpab,LOC103359197,LOC100707314 coding downstream 56136 11791387 ~ 11792699 (+)
oat oat coding downstream 58863 11794114 ~ 11802996 (+)
LOC120551667 chst15 coding downstream 113034 11848285 ~ 11889417 (+)
G211665 NA non-coding upstream 6201 11725141 ~ 11727426 (+)
LOC120550877 NA non-coding upstream 276066 11453221 ~ 11457561 (+)
G211417 NA non-coding upstream 653217 11080115 ~ 11080410 (+)
LOC120550777 NA non-coding upstream 786984 10944929 ~ 10946643 (+)
LOC120550775 NA non-coding upstream 789362 10937601 ~ 10944265 (+)
G211706 NA non-coding downstream 86553 11821804 ~ 11822046 (+)
G211710 NA non-coding downstream 103750 11839001 ~ 11839311 (+)
G211711 NA non-coding downstream 104293 11839544 ~ 11839743 (+)
G211762 acadsb non-coding downstream 300305 12035556 ~ 12036431 (+)
G211778 NA non-coding downstream 360781 12096032 ~ 12097836 (+)
LOC120550876 fam196a other upstream 333049 11363355 ~ 11400578 (+)
chac2 chac2,LOC102792373 other upstream 655620 11073477 ~ 11078007 (+)
cript cript other upstream 806401 10922423 ~ 10927226 (+)
kcng3 LOC104951029,LOC104923031 other upstream 821529 10819058 ~ 10912098 (+)
G211777 NA other downstream 352434 12087685 ~ 12088135 (+)
LOC120551485 adamts14,LOC103367006 other downstream 815326 12550577 ~ 12599464 (+)
LOC120551603 zmiz1,LOC102192508,LOC102310819 other downstream 985584 12720835 ~ 12827609 (+)
LOC120550681 comtd1 other downstream 1424725 13159976 ~ 13166392 (+)
zgc:153981 LOC104943448,LOC101465490,LOC103355374,LOC100701713,LOC104930939 other downstream 1445744 13180995 ~ 13184797 (+)

Expression


Co-expression Network