LOC120550681 (comtd1)


Basic Information

Item Value
gene id LOC120550681
gene name comtd1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 13159976 ~ 13166392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU287380
ATGCTAGGCTGAACAACAAAATCTGACAGGTGAAATCAGTTTCCTTGATTACCATTTGGTACAAAAATCAGGTCCAATTTAGCAGCAGCTGCGTTTTAGCTGAACCCATTCAGCTAAGCTAGCCAGATGCtaagtaaagttaacgttaccCGCAAATATACCATACAGATGATCTCTTGTCAGATGACCAGGCTGAAACATTTGACTTTGTCTTCATTGATGCAGACAAAGTTAACTATGACAACTACTTCGAAAAGTCTCTGAAACTGTTGAGGAAAGGGGGCATCATTGCTATCGACAACGTGCTGTGGAGTGGAAAAGTAGTGAATCCTTCCCCTGGCGACACAGACACTCTGGCCATCGACAAGCTCAACAAAAAGTTGCACCGAGATGCTCGAATCAGCCTGAGTATGCTCACAGTGGGAGATGGGCTTACAATAGCTATCAAATTATAGGGCCGATGTCCAATAAGTGCAATGGTTCATAGGCTTTGGAAGGTAACTCTGGGGAAACTGtccttttaaagttttaaaagtgAACTATTATATTGGATATGCCATGGTAGCTGAATGTGTTACTATCTGGGCTCATGTTACTTGTCACTGTATTGTTAAGTAATTCCAATGGCAGTTGTTTAACTTCACAATCAGTAACTTAGTTCATTTTACAGTAAAAAGACAAAGTGCAGCGTtggaataaaataaagaaatttgaTTCAAA
>XM_039787351.1
TAAACAAACACGGAAGAGCTTGAGCTGGGATCATGTCAATGGCTGGGATCACCAGATTTACCGTATGCCGTATCACAATTGTCGTATAAGATATGTCTTTTCGTAATATTTCCAAAGAGGCATTGGCTGGATCCATCACATTGGGAGTTGTTTTATTCGCCGGTTATTTCTTTGGGAAAAAGAAATCTTCCAAAATGAGCATCTTTAAAAGTCACACCGAGGGAAAAGACAACCCACTGCTGCAGTACGTCCTCAATAACTCCTTGAGGGAGCATCCGGCCCTGAAAAACCTCAGACTTAGGACAATGGAACACTCCTTGAACTTCATAATGGTCGCCTGTGAGCAGTCGCAGTTCATGGCCAATCTGGCAAAACTAATCAAAACCAAGAAAGCATTAGAGATTGGAGTATACACAGGCTACAACACACTGAGCATTGCACTGACTTTGCCTGACGATGGAGTTATAGTCGCATGTGATATCACTGAAGAATACGCCAACATTGGTAAACCCTTCTGGAAAGAGGCTGGAGTTGAGCAAAAAATTGATTTACGCATTCAGCCAGCACTGAAAACTCTAGATGATCTCTTGTCAGATGACCAGGCTGAAACATTTGACTTTGTCTTCATTGATGCAGACAAAGTTAACTATGACAACTACTTCGAAAAGTCTCTGAAACTGTTGAGGAAAGGGGGCATCATTGCTATCGACAACGTGCTGTGGAGTGGAAAAGTAGTGAATCCTTCCCCTGGCGACACAGACACTCTGGCCATCGACAAGCTCAACAAAAAGTTGCACCGAGATGCTCGAATCAGCCTGAGTATGCTCACAGTGGGAGATGGGCTTACAATAGCTATCAAATTATAGGGCCGATGTCCAATAAGTGCAATGGTTCATAGGCTTTGGAAGGTAACTCTGGGGAAACTGtccttttaaagttttaaaagtgAACTATTATATTGGATATGCCATGGTAGCTGAATGTGTTACTATCTGGGCTCATGTTACTTGTCACTGTATTGTTAAGTAATTCCAATGGCAGTTGTTTAACTTCACAATCAGTAACTTAGTTCATTTTACAGTAAAAAGACAAAGTGCAGCGTtggaataaaataaagaaatttgaTTCAAAAACAAA
>XM_039787352.1
TTTTACAGTCCTATCATGAGAGCAGCAGCCGGTCATATGACCGTTATTATCTCTACATGACTGAGCGAATTTTTAAGGTTCATTTAATCAGGAATTCAGTTCAGCGCTCTCTCAGACCCAAGACCCTCTTCTTTAGACGCAACTGTGCCGGAAAAAGAAATCTTCCAAAATGAGCATCTTTAAAAGTCACACCGAGGGAAAAGACAACCCACTGCTGCAGTACGTCCTCAATAACTCCTTGAGGGAGCATCCGGCCCTGAAAAACCTCAGACTTAGGACAATGGAACACTCCTTGAACTTCATAATGGTCGCCTGTGAGCAGTCGCAGTTCATGGCCAATCTGGCAAAACTAATCAAAACCAAGAAAGCATTAGAGATTGGAGTATACACAGGCTACAACACACTGAGCATTGCACTGACTTTGCCTGACGATGGAGTTATAGTCGCATGTGATATCACTGAAGAATACGCCAACATTGGTAAACCCTTCTGGAAAGAGGCTGGAGTTGAGCAAAAAATTGATTTACGCATTCAGCCAGCACTGAAAACTCTAGATGATCTCTTGTCAGATGACCAGGCTGAAACATTTGACTTTGTCTTCATTGATGCAGACAAAGTTAACTATGACAACTACTTCGAAAAGTCTCTGAAACTGTTGAGGAAAGGGGGCATCATTGCTATCGACAACGTGCTGTGGAGTGGAAAAGTAGTGAATCCTTCCCCTGGCGACACAGACACTCTGGCCATCGACAAGCTCAACAAAAAGTTGCACCGAGATGCTCGAATCAGCCTGAGTATGCTCACAGTGGGAGATGGGCTTACAATAGCTATCAAATTATAGGGCCGATGTCCAATAAGTGCAATGGTTCATAGGCTTTGGAAGGTAACTCTGGGGAAACTGtccttttaaagttttaaaagtgAACTATTATATTGGATATGCCATGGTAGCTGAATGTGTTACTATCTGGGCTCATGTTACTTGTCACTGTATTGTTAAGTAATTCCAATGGCAGTTGTTTAACTTCACAATCAGTAACTTAGTTCATTTTACAGTAAAAAGACAAAGTGCAGCGTtggaataaaataaagaaatttgaTTCAAAAACAAA

Function

symbol description
comtd1 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in liver. Orthologous to human COMTD1 (catechol-O-methyltransferase domain containing 1).

NR:

description
PREDICTED: catechol O-methyltransferase domain-containing protein 1 isoform X1

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008171 O-methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU287380 False 720 lncRNA 0.40 3 13164372 13166386
XM_039787351.1 True 1137 mRNA 0.42 7 13160460 13166392
XM_039787352.1 False 1112 mRNA 0.42 7 13159976 13166392

Neighbor

gene id symbol gene type direction distance location
LOC120550677 znf503,LOC100700352,LOC102790377 coding upstream 29650 13127529 ~ 13130326 (+)
LOC120550674 LOC102213110,LOC102789302,LOC102314531,LOC106919544,LOC106949528,LOC106517014 coding upstream 160970 12902315 ~ 12999006 (+)
LOC120550820 NA coding upstream 258411 12865482 ~ 12901565 (+)
anxa11b LOC101063934,LOC103369864 coding upstream 298303 12852761 ~ 12861673 (+)
LOC120550911 ppif,LOC107089276,LOC102312480,LOC103142309,LOC101486912,LOC100699547,LOC106930515,LOC105928234 coding upstream 322799 12828132 ~ 12837177 (+)
LOC120550684 dusp13 coding downstream 11884 13178276 ~ 13180267 (+)
LOC120550682 LOC103355373,LOC102308040,LOC104943471,LOC107088785,LOC106611756 coding downstream 18139 13184531 ~ 13190024 (+)
dusp29 LOC102308040,LOC102210741,LOC104943452 coding downstream 27984 13194376 ~ 13199277 (+)
LOC120551796 c1ql1,LOC104931779,LOC102295538,LOC101469500 coding downstream 202357 13368749 ~ 13376763 (+)
LOC120551280 LOC104943457 coding downstream 235127 13401519 ~ 13410575 (+)
G211961 NA non-coding upstream 342836 12816890 ~ 12817140 (+)
G211956 NA non-coding upstream 347449 12811682 ~ 12812527 (+)
G211954 NA non-coding upstream 349715 12810052 ~ 12810261 (+)
G211919 NA non-coding upstream 535281 12617355 ~ 12624695 (+)
G211864 ddit4,LOC103362467 non-coding upstream 721323 12399904 ~ 12438653 (+)
G212043 vdac2,LOC104943447,LOC101464912,LOC100700892 non-coding downstream 1766 13168158 ~ 13169851 (+)
G212065 NA non-coding downstream 31109 13197501 ~ 13197930 (+)
G212086 vcl,LOC106959441,LOC103142331,LOC102228164,LOC102207794 non-coding downstream 166942 13333334 ~ 13335524 (+)
G212092 vcl non-coding downstream 177326 13343718 ~ 13347321 (+)
LOC120551193 NA non-coding downstream 178379 13344771 ~ 13349545 (+)
LOC120551603 zmiz1,LOC102192508,LOC102310819 other upstream 332367 12720835 ~ 12827609 (+)
LOC120551485 adamts14,LOC103367006 other upstream 560512 12550577 ~ 12599464 (+)
G211777 NA other upstream 1071841 12087685 ~ 12088135 (+)
LOC120550876 fam196a other upstream 1759398 11363355 ~ 11400578 (+)
chac2 chac2,LOC102792373 other upstream 2081969 11073477 ~ 11078007 (+)
zgc:153981 LOC104943448,LOC101465490,LOC103355374,LOC100701713,LOC104930939 other downstream 14603 13180995 ~ 13184797 (+)
G212108 NA other downstream 213824 13380216 ~ 13380934 (+)
G212254 NA other downstream 834408 14000800 ~ 14032589 (+)
atrnl1b atrnl1 other downstream 1541514 14707906 ~ 14770629 (+)
ppp1cab pp1g,LOC101069117,LOC100706881,LOC102229527,LOC103381595,LOC105024386,LOC107094299 other downstream 3202544 16368936 ~ 16377024 (+)

Expression


Co-expression Network