mmp21 (mmp21)


Basic Information

Item Value
gene id mmp21
gene name mmp21
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11583189 ~ 11587630 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787207.1
tgtgtgtgtgtgtgtgtgtgtgtgtcctatttAAAACAGGTGTCAGCAGAAGTCATGGCTGTCCTATTGTCCACATGAAAGTGAAGGTTTCAACTTATTTCCACAGGTCAACAGCAGTGCATTTAAAACCAGTGGAGCGTGtataacacatacatacaattcAGTCAAATTGAGCAGTTGGAGACAGTAAAGACAGGTTTACTTTTCACACAAAGCTGAAGAAAGTGGGATACGTCCATATAGTCGCACCTGTAGATGGGTGTGGAGAAACTCAGGATCTGCCTATAAAGCACTGTGGCTTCTTACTTGTATATAGTTACATGAGTAAATCAATGCCACGATGCTGACTTTTATCCAGCTGATGATTTTGCTTCTTTGGACGAGCATTAGCTCAGCTGATGCAGAGAAACTTTTCCACAATCGGGATCATTCTGATGTGCAGCCCTTTAATTCTCACCAAGCTAAGGTTATAACAGACAAGTACACAGCAGAGTTATTTCTCTCTAGATATGGATTCATTAAGCCGGTGAACTGGGAGGAGATCCAGTTTGAAGATTCAGACGCCTCTTTTAATGACGACTTCTTGGATGATCTTCAAGACACGATCCAAGAAGGAACATCAATGCATCACTCAAGGGATGCTCCTCAGGATGGCGAACACGATGACCACAACAGTCTAACTGAGAGCCAAGCGTTTATTTCAGCACTTAAAGAGTTTCAGACGCTGTCAGGCCTGCCTGCCACAGGTGTGTTTGATGAGGCCACCAAGGCGGCAATGAACAAACCGAGGTGTGGAGTCCCTGACAAGGAGATTAACCTGGACACCCCTGTAGCACCTGAGAACAGCAGTGCCTCAGATACTGAAAACGGTTTCAGTGACGCTTTCAATGAGACTGATAGTAACAACACAATCAGTGACTCTTCTTTTGGTACTGCTAACTCCTCTGAAGACGACATATTCAACGTTAATGACACAGAAAGTGTTTCCAATGACACCAGCTTGAATTACACAGACTTGAACTTAATTGATCACATTGTAAACAACACTTCTCTAAACAGCTCACATGATGAGGTAAATATCAGCGTGAACGCCCATCAGAGCGAAGCTGTGCGACGCAGGAAACGTCACCTCGCCACTCTTGTGTCCAAAAGCAGGCACAAGAGAGATTTGAGTGAAACGGGTTACATGGCCTTTACTAAGAAGATGTTGAAATGGAGGCTGATAGGAGAAGGCTACAGCAGTCAGTTGTCCATTGAAGACCAGAGGTACATCTTCAGACTGGCCTTCAGGATGTGGAGTGAAGTGTCTCCGCTGGAGTTTGTGGAGGATACACGTTCCCCACTGGAGGATGTTGATATCAGGCTAGGCTTTGGCACAGGTAGGCATCTGGGTTGCAATCAGAGATTTGATGGCACTGGTCAAGAATTTGCCCACGCCTGGTTCCTGGGTGATATACACTTCGATGACGACGAACATTTTACTGCTCCCAATGCTGGCAGTGGGATCAGCCTTCTCAAAGTAGCAGTTCATGAGATCGGCCATGTTTTGGGTCTCCCCCACTCATACAGAGCTGGCTCGATAATGCAGCCCAGCTATCTGCCCCAGGAGTCAGGCTTTGAAATGGACTGGATGGACAGGAAGGCCATACAGCACCTCTATGGGGGATGTAAAGGTCAATTCAACACAGCATTTGATTGGATAAGAAAGGAAAAGACGCCCTATGGGGAGGTGGTCATCCGCTTTAACACCTATTTCTTGCGAGACGGCTGGTACTGGCTGTATGAGAACAGAAATAACCGAACACGCTATGGAGATCCAGTTGCACTGCAGGTTGGCTGGCGTGGAATTCCCATGGATGGAGTGGATGCTTATGTGCATGTGTGGTCCAGAAAAAGAGATGCTGTTTACTTCTTTAAAGGAGCTCAGTTCTGGAGGTATGACAATGAGAATGATCAGGTGTTCAGACAGGACCCTGAAGGCCACCACTATCCAAGGCTAATCTCTGAGGGTTTCCCAGGGGTGTTTAGTCCCATTGACACAGCCTTCTATGACAGGAGGGACTCTCGCATCTACTTCTTCAAAAACATTCTTGTGTATGCATTCGATGTGGAAGCCAACAGCTTGGCAAGAGGCTTCCCCAAAAACATCAGAGTTTTTTTCCCTCCAGTGGTGAGTGGAGACCATCCAGATGGCAACATTGATGCTGCCTACTTCTCCTACACCCACAATGCCATCTTTCTACTCAAGGGCACACGCTTTTGGCAGGTGGTGGGCAGCCGCGATCGCTGGCGCCGGCCCTTTCTGCCACGAAATGGCCTGCTGCCACACAAGGAGGTGGATCAGCACTGGTTCGACATCTGCAACGTTCATCCCACTGCACTCAAACTAACCCGCTGAGTTTGCTGAAGCAGAGATCCATTAAACCCTACTAATGTGTACTGA
>XM_039787208.1
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctatttAAAACAGGTGTCAGCAGAAGTCATGGCTGTCCTATTGTCCACATGAAAGTGAAGTTATTTCTCTCTAGATATGGATTCATTAAGCCGGTGAACTGGGAGGAGATCCAGTTTGAAGATTCAGACGCCTCTTTTAATGACGACTTCTTGGATGATCTTCAAGACACGATCCAAGAAGGAACATCAATGCATCACTCAAGGGATGCTCCTCAGGATGGCGAACACGATGACCACAACAGTCTAACTGAGAGCCAAGCGTTTATTTCAGCACTTAAAGAGTTTCAGACGCTGTCAGGCCTGCCTGCCACAGGTGTGTTTGATGAGGCCACCAAGGCGGCAATGAACAAACCGAGGTGTGGAGTCCCTGACAAGGAGATTAACCTGGACACCCCTGTAGCACCTGAGAACAGCAGTGCCTCAGATACTGAAAACGGTTTCAGTGACGCTTTCAATGAGACTGATAGTAACAACACAATCAGTGACTCTTCTTTTGGTACTGCTAACTCCTCTGAAGACGACATATTCAACGTTAATGACACAGAAAGTGTTTCCAATGACACCAGCTTGAATTACACAGACTTGAACTTAATTGATCACATTGTAAACAACACTTCTCTAAACAGCTCACATGATGAGGTAAATATCAGCGTGAACGCCCATCAGAGCGAAGCTGTGCGACGCAGGAAACGTCACCTCGCCACTCTTGTGTCCAAAAGCAGGCACAAGAGAGATTTGAGTGAAACGGGTTACATGGCCTTTACTAAGAAGATGTTGAAATGGAGGCTGATAGGAGAAGGCTACAGCAGTCAGTTGTCCATTGAAGACCAGAGGTACATCTTCAGACTGGCCTTCAGGATGTGGAGTGAAGTGTCTCCGCTGGAGTTTGTGGAGGATACACGTTCCCCACTGGAGGATGTTGATATCAGGCTAGGCTTTGGCACAGGTAGGCATCTGGGTTGCAATCAGAGATTTGATGGCACTGGTCAAGAATTTGCCCACGCCTGGTTCCTGGGTGATATACACTTCGATGACGACGAACATTTTACTGCTCCCAATGCTGGCAGTGGGATCAGCCTTCTCAAAGTAGCAGTTCATGAGATCGGCCATGTTTTGGGTCTCCCCCACTCATACAGAGCTGGCTCGATAATGCAGCCCAGCTATCTGCCCCAGGAGTCAGGCTTTGAAATGGACTGGATGGACAGGAAGGCCATACAGCACCTCTATGGGGGATGTAAAGGTCAATTCAACACAGCATTTGATTGGATAAGAAAGGAAAAGACGCCCTATGGGGAGGTGGTCATCCGCTTTAACACCTATTTCTTGCGAGACGGCTGGTACTGGCTGTATGAGAACAGAAATAACCGAACACGCTATGGAGATCCAGTTGCACTGCAGGTTGGCTGGCGTGGAATTCCCATGGATGGAGTGGATGCTTATGTGCATGTGTGGTCCAGAAAAAGAGATGCTGTTTACTTCTTTAAAGGAGCTCAGTTCTGGAGGTATGACAATGAGAATGATCAGGTGTTCAGACAGGACCCTGAAGGCCACCACTATCCAAGGCTAATCTCTGAGGGTTTCCCAGGGGTGTTTAGTCCCATTGACACAGCCTTCTATGACAGGAGGGACTCTCGCATCTACTTCTTCAAAAACATTCTTGTGTATGCATTCGATGTGGAAGCCAACAGCTTGGCAAGAGGCTTCCCCAAAAACATCAGAGTTTTTTTCCCTCCAGTGGTGAGTGGAGACCATCCAGATGGCAACATTGATGCTGCCTACTTCTCCTACACCCACAATGCCATCTTTCTACTCAAGGGCACACGCTTTTGGCAGGTGGTGGGCAGCCGCGATCGCTGGCGCCGGCCCTTTCTGCCACGAAATGGCCTGCTGCCACACAAGGAGGTGGATCAGCACTGGTTCGACATCTGCAACGTTCATCCCACTGCACTCAAACTAACCCGCTGAGTTTGCTGAAGCAGAGATCCATTAAACCCTACTAATGTGTACTGA
>XM_039787209.1
gtgtgtgtgtgtgtgtgtgtgtgtgtcctatttAAAACAGGTGTCAGCAGAAGTCATGGCTGTCCTATTGTCCACATGAAAGTGAAGGTTTCAACTTATTTCCACAGGTCAACAGCAGTGCATTTAAAACCAGTGGAGCGTGtataacacatacatacaattcAGTCAAATTGAGCAGTTGGAGACAGTAAAGACAGGTTTACTTTTCACACAAAGCTGAAGAAAGTGGGATACGTCCATATAGTCGCACCTGTAGATGGGTGTGGAGAAACTCAGGATCTGCCTATAAAGCACTGTGGCTTCTTACTTGTATATAGTTACATGAGTAAATCAATGCCACGATGCTGACTTTTATCCAGCTGATGATTTTGCTTCTTTGGACGAGCATTAGCTCAGCTGATGCAGAGAAACTTTTCCACAATCGGGATCATTCTGATGTGCAGCCCTTTAATTCTCACCAAGCTAAGGTTATAACAGACAAGTACACAGCAGAGTTATTTCTCTCTAGATATGGATTCATTAAGCCGGTGAACTGGGAGGAGATCCAGTTTGAAGATTCAGACGCCTCTTTTAATGACGACTTCTTGGATGATCTTCAAGACACGATCCAAGAAGGAACATCAATGCATCACTCAAGGGATGCTCCTCAGGATGGCGAACACGATGACCACAACAGTCTAACTGAGAGCCAAGCGTTTATTTCAGCACTTAAAGAGTTTCAGACGCTGTCAGGCCTGCCTGCCACAGGTGTGTTTGATGAGGCCACCAAGGCGGCAATGAACAAACCGAGGTGTGGAGTCCCTGACAAGGAGATTAACCTGGACACCCCTGTAGCACCTGAGAACAGCAGTGCCTCAGATACTGAAAACGGTTTCAGTGACGCTTTCAATGAGACTGATAGTAACAACACAATCAGTGACTCTTCTTTTGGTACTGCTAACTCCTCTGAAGACGACATATTCAACGTTAATGACACAGAAAGTGTTTCCAATGACACCAGCTTGAATTACACAGACTTGAACTTAATTGATCACATTGTAAACAACACTTCTCTAAACAGCTCACATGATGAGGTAAATATCAGCGTGAACGCCCATCAGAGCGAAGCTGTGCGACGCAGGAAACGTCACCTCGCCACTCTTGTGTCCAAAAGCAGGCACAAGAGAGATTTGAGTGAAACGGGTTACATGGCCTTTACTAAGAAGATGTTGAAATGGAGGCTGATAGGAGAAGGCTACAGCAGTCAGTTGTCCATTGAAGACCAGAGGTACATCTTCAGACTGGCCTTCAGGATGTGGAGTGAAGTGTCTCCGCTGGAGTTTGTGGAGGATACACGTTCCCCACTGGAGGATGTTGATATCAGGCTAGGCTTTGGCACAGGTAGGCATCTGGGTTGCAATCAGAGATTTGATGGCACTGGTCAAGAATTTGCCCACGCCTGGTTCCTGGGTGATATACACTTCGATGACGACGAACATTTTACTGCTCCCAATGCTGGCAGTGGGATCAGCCTTCTCAAAGTAGCAGTTCATGAGATCGGCCATGTTTTGGGTCTCCCCCACTCATACAGAGCTGGCTCGATAATGCAGCCCAGCTATCTGCCCCAGGAGTCAGGCTTTGAAATGGACTGGATGGACAGGAAGGCCATACAGCACCTCTATGGGGGATGTAAAGGTCAATTCAACACAGCATTTGATTGGATAAGAAAGGAAAAGACGCCCTATGGGGAGGTGGTCATCCGCTTTAACACCTATTTCTTGCGAGACGGCTGGTACTGGCTGTATGAGAACAGAAATAACCGAACACGCTATGGAGATCCAGTTGCACTGCAGGTTGGCTGGCGTGGAATTCCCATGGATGGAGTGGATGCTTATGTGCATGTGTGGTCCAGAAAAAGAGATGCTGTTTACTTCTTTAAAGGAGCTCAGTTCTGGAGGTATGACAATGAGAATGATCAGGTGTTCAGACAGGACCCTGAAGGCCACCACTATCCAAGGCTAATCTCTGAGGGTTTCCCAGGGGTGTTTAGTCCCATTGACACAGCCTTCTATGACAGGAGGGACTCTCGCATCTACTTCTTCAAAAACATTCTTTGGTGAGTGGAGACCATCCAGATGGCAACATTGATGCTGCCTACTTCTCCTACACCCACAATGCCATCTTTCTACTCAAG

Function

symbol description
mmp21 Predicted to enable metalloendopeptidase activity. Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Is expressed in Kupffer's vesicle. Human ortholog(s) of this gene implicated in visceral heterotaxy. Orthologous to human MMP21 (matrix metallopeptidase 21).

NR:

description
PREDICTED: matrix metalloproteinase-21 isoform X2

GO: NA

KEGG:

id description
K08000 MMP21; matrix metalloproteinase-21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787207.1 True 2443 mRNA 0.47 7 11583197 11587630
XM_039787208.1 False 2044 mRNA 0.48 7 11583189 11587630
XM_039787209.1 False 2173 mRNA 0.46 7 11583196 11587435

Neighbor

gene id symbol gene type direction distance location
uros uros coding upstream 75 11579205 ~ 11583114 (+)
dhx32a dhx32 coding upstream 5557 11570717 ~ 11577632 (+)
LOC120550601 adam12,LOC104959042 coding upstream 13909 11496582 ~ 11569280 (+)
c21h10orf90 NA coding upstream 88544 11476964 ~ 11494645 (+)
LOC120550580 NA coding upstream 338793 11242599 ~ 11244396 (+)
ctbp2l ctbp2,LOC104925227,LOC100698659,LOC105926449,LOC107387783,LOC102290675,LOC103381637,LOC103150461,LOC101467118,LOC102209184,LOC102797539,LOC103481571 coding downstream 33011 11620641 ~ 11718443 (+)
hpdl hpdl coding downstream 149347 11736977 ~ 11739509 (+)
fam53b fam53b,LOC104942014 coding downstream 155577 11743207 ~ 11758918 (+)
LOC120551790 hnrnpab,LOC103359197,LOC100707314 coding downstream 203757 11791387 ~ 11792699 (+)
oat oat coding downstream 206484 11794114 ~ 11802996 (+)
LOC120550877 NA non-coding upstream 125628 11453221 ~ 11457561 (+)
G211417 NA non-coding upstream 502779 11080115 ~ 11080410 (+)
LOC120550777 NA non-coding upstream 636546 10944929 ~ 10946643 (+)
LOC120550775 NA non-coding upstream 638924 10937601 ~ 10944265 (+)
G211370 mta3 non-coding upstream 697238 10878917 ~ 10885951 (+)
G211665 NA non-coding downstream 137511 11725141 ~ 11727426 (+)
G211666 zranb1,LOC104942016 non-coding downstream 145997 11733627 ~ 11735251 (+)
G211706 NA non-coding downstream 234174 11821804 ~ 11822046 (+)
G211710 NA non-coding downstream 251371 11839001 ~ 11839311 (+)
G211711 NA non-coding downstream 251914 11839544 ~ 11839743 (+)
LOC120550876 fam196a other upstream 182611 11363355 ~ 11400578 (+)
chac2 chac2,LOC102792373 other upstream 505182 11073477 ~ 11078007 (+)
cript cript other upstream 655963 10922423 ~ 10927226 (+)
kcng3 LOC104951029,LOC104923031 other upstream 671091 10819058 ~ 10912098 (+)
G211777 NA other downstream 500055 12087685 ~ 12088135 (+)
LOC120551485 adamts14,LOC103367006 other downstream 962947 12550577 ~ 12599464 (+)
LOC120551603 zmiz1,LOC102192508,LOC102310819 other downstream 1133205 12720835 ~ 12827609 (+)
LOC120550681 comtd1 other downstream 1572346 13159976 ~ 13166392 (+)
zgc:153981 LOC104943448,LOC101465490,LOC103355374,LOC100701713,LOC104930939 other downstream 1593365 13180995 ~ 13184797 (+)

Expression


Co-expression Network