tvp23b (LOC104952594)


Basic Information

Item Value
gene id tvp23b
gene name LOC104952594
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 5070895 ~ 5078247 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787490.1
CGTAAAaccccaaagaagaagaagacgtaACCAGTAGAACGATGACGTTCTGCCTTCCGTGGACGTAACCAGGAAGAGCCTGCTCAGTTTCCAACATGCTAACAGACGATAACAATGACGAAGACGTGTCTCTGTTTGACGCGGAGGAGGATGCAGGGAAAAGGTCAAAGAAAACCAATATTAGGCATCCAGTGGCGTCCTTCTTTCACCTGTTCTTCAGAGTGAGTGCCATCATCGTGTACCTGCTCTGTGAGATTTTTAGTAGCAGTTTCATCGCCTGCATGGTCACAATTATCCTTCTGCTCTCCTGTGACTTCTGGACAGTgaagAACATCACTGGGAGATTGATGGTTAGTCTGCGGTGGTGGAACCAGGTGGATGATGACGGACGCAACCACTGGGTGTTTGAGTCTAGGAAGGGTACCGGGAAGCAACAGGCGGCAGATTCTGAGTCCCGAATCTTCTGGATCGGACTGATTGTTTGTCCGGTCCTCTGGGTCGTCTTTGCTTTCAGCACCCTGTTTTCCTTTAAGATTAAATGGGTGCCTGTGGTGATCATGGGCGTGGTGTTGCAAGGCGCCAACCTCTACGGCTACGTGCGCTGTAAAGTGGGAAGCAGGACCAGCTTAAAGAATATGGCTACAAATTATTTTGGGCGACAGTTCCTCAAACAGGCGCTGTCTAAAGAAGAGGAATCGTAGAGTGCAGCTCTGCGATTTTGAACATGTTTGCATTGTTATTAAtgctattatatatattattctagCAACTTGATAGAAAAGTCTTTTTGAAATATTAACTgaaataacagtttttttttcttcttttgtttctttctaatGTAATGTTGCGACTCAATCAGTCCCAAAAGAAAGTTTCTTTTTCCACAGATAGATCTGGTAGCTGTTTCCAGTAACCGAAGCTCAGCTATGAAACCTCACAGACTTTTATGCATGAGTGGAAAAAGGGCGTAATGGTGTGAAATGTTAAAGTGGCATGTAGTCGATCATCTCCCTGAGGTATCTTCTTTAGTCTGTTTTCTTTAATTtctcttctttagttttttcttcactgactacgtttacatgcacataatattgcGCTTTTTTCCCTTAATACGAAAAAAGACACCATTCCGAATATGCTGTTcacatggctaatgaaaactAATATTCCTGCTTACatgcagccgtgcaaaataggatttttttcACCAAGTGTTCCACCGGTGGCGGGCTTGTTGGAGAGCGTGAACACAGCCTCCCTGTTTGATCCCTTCAACCATCTTCTTGAAAACGTTGACGATGTGATGAGTGCGCATATTCAAAAACCTGTAGATATCCCAAGTCTTTCATACCGTTTcaaaaagtagctgtgtttctctgtcttcATATTTTGACCGTGCCTCTCTACCGTAACCTTGCAAACGCTTGGCTGGTTGCAGAGGTGTATCGTCCAGGTggcagaaagtaaaaatcctgccatgtttttggatctgcctctacatctagaacaggtgttttcactaacgagctcatctacctggtagaggagctggtttagtgatggttgggacagctgctggacaggatttctactttctggcacctggactatacacctctggctGGTTGGTTTTGGTTGGTTTATGtacagtaaccatagcaacgcacagagctcaCCGTAAGCCGTAAACGCACAAGAGACCGTAAACGGTCACAAACTGTGGTTTTAAAAACCTCTGATTGACACAAATATCCTAAAtacgctgtatacatgtccaaagaatgaaTAATATCGGAATATCAAACGTCTTAATCTAAAAATATTTGGAaaaaaggtctttttttttggaatatCCAAACCGAATATGCTGTTTACGTGACCTGTATGATTGTCATATTGTGAAATAATCGTGGAATATTAGCGTGCATGTAAACTTACTCAATGATTCCTAACTTTAATCTTTATAAAACGAATAATGTGTTTGAGAGGTGTTATacaaacatttgtgtttttgtataatGGACAAGGTTGTAAAGTAACAGTGTAAAGTATCCCAGGAGtttgtaaatatgtatgtaaaGAAACTATGTGGAACGTCTTCTTTTGTGCAAATACATTTGTAACATTTTTCCGAA

Function

NR:

description
Golgi apparatus membrane protein TVP23 homolog B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787490.1 True 2141 mRNA 0.41 7 5070895 5078247

Neighbor

gene id symbol gene type direction distance location
trim16 LOC102784917 coding upstream 3192 5051348 ~ 5067703 (+)
fads6 fads6,LOC102778420 coding upstream 27886 5027164 ~ 5043009 (+)
LOC120551198 LOC104952591,LOC103376278 coding upstream 49801 5008225 ~ 5021094 (+)
hid1b hid1 coding upstream 89477 4946970 ~ 4981418 (+)
plaub NA coding upstream 131074 4924683 ~ 4939821 (+)
exoc7 exoc7,LOC102778721 coding downstream 1698 5079945 ~ 5106487 (+)
LOC120551710 LOC107101850 coding downstream 41842 5120089 ~ 5123604 (+)
ccr10 NA coding downstream 68365 5146612 ~ 5187662 (+)
fmnl1b LOC103367392 coding downstream 120504 5198751 ~ 5249758 (+)
LOC120550764 kansl1 coding downstream 625098 5703345 ~ 5741047 (+)
G209968 NA non-coding upstream 8239 5062363 ~ 5062656 (+)
G209931 NA non-coding upstream 40871 4975929 ~ 5030024 (+)
G209906 NA non-coding upstream 166589 4904098 ~ 4904306 (+)
G209905 NA non-coding upstream 169898 4900770 ~ 4900997 (+)
LOC120551570 NA non-coding upstream 215484 4743438 ~ 4855411 (+)
G210006 LOC103373963,LOC102232678,LOC105926434,LOC103150794,LOC103481593,LOC107753270 non-coding downstream 34914 5113161 ~ 5113386 (+)
G210020 NA non-coding downstream 64368 5142615 ~ 5220624 (+)
G210026 NA non-coding downstream 113752 5191999 ~ 5192806 (+)
G210027 NA non-coding downstream 118008 5196255 ~ 5196603 (+)
G210030 NA non-coding downstream 145793 5224040 ~ 5229881 (+)
map2k6 LOC103367941,LOC105926483,LOC102221885,LOC100697345,LOC103150707 other upstream 354312 4674237 ~ 4716583 (+)
LOC120551345 plekha1,LOC106957628 other upstream 1042613 3998373 ~ 4028282 (+)
LOC120550571 NA other upstream 1247644 3818853 ~ 3823251 (+)
G209514 NA other upstream 1423898 3646009 ~ 3646997 (+)
G209344 NA other upstream 2237221 2671275 ~ 2833674 (+)
LOC120550763 LOC100696279,LOC101467831,LOC107093968 other downstream 513088 5591335 ~ 5687896 (+)
LOC120551158 NA other downstream 736989 5815236 ~ 6259659 (+)
kctd2 kctd2,LOC102796578,LOC107089511,LOC103371831,LOC103398851,LOC106521991 other downstream 1004855 6083102 ~ 6092738 (+)
LOC120551157 NA other downstream 1141622 6219869 ~ 6270445 (+)
stx4 stx4 other downstream 1299889 6378136 ~ 6392578 (+)

Expression


Co-expression Network