LOC120550936 (LOC100695060,LOC101472949,LOC102791232,LOC102301473)


Basic Information

Item Value
gene id LOC120550936
gene name LOC100695060,LOC101472949,LOC102791232,LOC102301473
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 8777654 ~ 8815625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787937.1
GACGGTTTGTGTCCCGGAAGTGTTTCTCTTTACCCAACGAGGTCATAATGGCGGCTCGCTGCATGTGAAGGGGTCGAAACGGGAGCCGGCTTTATGAGACGGGAACATGTATAAAACGCCATGTAGCAGACTGGCAGGTTTGGTTGGTGTAAACGTGAAACAGAGCTTAGTTCAAAATGTTCCGCACTGTAACCAGACTGCTCGCAGCCTTATTCAGCTGCACAGGAGAGATACATCTAACTGGCTGACGTACCAGCACCTTAACTTCCTGAAACGCCAGTATGTAGCAAAGAACAACAGTGAGCTTCACCAACGTGCTATCGCGAAACCGGCTCCTGCCCGGACCATTGTGGACGAGAGAGACGACAGCATTGAAAGACAGGTGCAGAGAATCCCAACTATTGATCCTGTGGTCACAGATACTGTTTCACAGCCAGAGGATGTCACGAGTGAAGCACAGCCTGGAATATCAACCTTGAAGCCCAATACAGAAGACGTGGCAGTACAGAAAGATGCTATGTCCCGTACGCTTGTGACCTCGGTCGAGACTCCCCATGTCCATGTGGAGACAGATGAGGCAAGGGAGGCACGTCTAGACAGACAATGGAAGGAGATGAAGGTCGATGTGGCTGACTTGCCAGATATTTACGCCAAGCTTGCCAAAATCAAACTCACAGCACTGGTGGTTACAAGTGCAGCAGCCGGCTATGCGATGGCTCCGGTGCCCTTTGACCCCCTCATCTTCTTCGTGTCTTCTCTGGGAACAGGCCTCGCCTCTTGCACTGCCAATTCAATCAACCAGTACTTTGAAGTGCCCTTCGACTCCAACATGAACCGTACAAAGAACCGTCCGCTCGTCAGAGGACAAATCAGTCCCCTCCATGCGGTGTCCTTTGCTCTGGCCTGTGGAATTCCCGGAGTCGCTCTGCTCACACTGGCAGTAAACCCCTTGACGGGCTTCCTGGGTGCCCTCAACATCTTTCTCTACACCTGTTGCTACACACCGCTCAAGAGGCTCAGCATCACCAACACCTGGGTGGGAGCAGTGGTGGGTGCAATACCTCCTGTCATGGGCTGGACGGCTGCTACAGGTTGTCTGGAGCCAGGTGCTTTGTTGATGGGTGGTTTCCTGTACAGCTGGCAGTTCCCCCACTTCAACGCCCTCAGCTGGAACTTGAGGGAAGACTACTCCCGTGGCGGCTACCGCATGATGTCCGTCACCCACCCTGGCATGTGCAAGCGGGTGGCCCTGCGCCACAGCGTGGGCCTGATCGGCCTGTCGACCTTAGCGCCCGTGCTGGACGTCACCACCTGGACCTTCCCTGTCATCTCCTTACCCATCAACGTGTACATCAGCTACCTGGCCTTCCGCTTCTACCGCAAGGGAGACCGCAGCAGCGCCCGCAAGCTGTTCTTCTGCAGCCTGTGGCACCTgcccatgctgctgctgctggcgctCACCTGCAAGAAGCCTCGCAGAGACGCCGAGGATCCAGCTCTACCTCCAGCTTCTTTACCCCTCACGCTGCAGAGCTAACTAGTCTCATAGAGGCTTAAACACTTCGAAGACCTCCGAGTCCTTCATTTTAACTGAGATACTCCCTCAGTGTCTCCCTTAACCACTCGCTGTGCTCGGAGGGGTCTGGATGACGGACTCGTTATTGTATCGGTGTTTAATTGAAGCCAGTGGCGCTCACTGTAGTTCAAGGAAATGAGCTGGAAATGATTTGGATCCAAATAACTGATCTacagaaaacacactgaatcATTTACATGAGGTTGTAATCAATgcaatgtgtgtctgtctgtgtgtgtgtactgtatatatttatttatataggagcCCACCAGTTCCTCTCCATGTTGTACATGACTGTGATTAAATAGCTTGTACAGTGTAACTTGCTCCTATGGATCTGCACAGGGATCGCTGTCTGCAGATTATTGCATTGTACAAATGCAAGTACATATATAACGGACATGAAGACATCATGTAATCACAACATTCATGTTTGATTTTCAGTCAATGTATGAAAATAGGACAAATATAAACTCTGAAGCAGCTACGACACTGGACTTGATATCTGTTcgttgtgttttgactgtcccCTGATCCCCCGGTACCTGACGGTTAGTAAATCATTGTATTTTGCTACACAGCAAACGCACTGGTGGctctttattcattttcataATGCTTTAATTCAACACGGTTCACCTGTACCAAAACTAAGGGAATAGCTGATCCCTGAACGCAACACAAGGGCAAATGTTCTCCAACAATAAACATCCTGATTGTAATTCTG

Function

NR:

description
PREDICTED: protoheme IX farnesyltransferase, mitochondrial

GO:

id name namespace
GO:0048034 heme O biosynthetic process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008495 protoheme IX farnesyltransferase activity molecular_function

KEGG:

id description
K02257 COX10, ctaB, cyoE; heme o synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787937.1 True 2306 mRNA 0.50 7 8777654 8815625

Neighbor

gene id symbol gene type direction distance location
fbxw10 NA coding upstream 167990 8601846 ~ 8609664 (+)
trnag-ccc_1 NA coding upstream 176406 8601178 ~ 8601248 (+)
LOC120551063 ppp1r9b,LOC100709627,LOC102205956,LOC102789794 coding upstream 181639 8576662 ~ 8596015 (+)
col1a1b LOC102789211,LOC100694532,LOC102204830 coding upstream 213067 8543535 ~ 8564587 (+)
si:ch1073-13h15.3 LOC103381816,LOC103372025 coding upstream 271147 8499730 ~ 8506507 (+)
hs3st3b1b hs3st3b1,LOC101472659,LOC100710426 coding downstream 4137 8819762 ~ 8840446 (+)
ttyh2 ttyh2,LOC102794331 coding downstream 761765 9577390 ~ 9644745 (+)
kif19 kif19 coding downstream 830066 9645691 ~ 9690366 (+)
si:ch73-127m5.2 LOC104961255,LOC103352807,LOC101468102 coding downstream 875887 9691512 ~ 9696774 (+)
si:dkey-21e13.3 LOC103352816,LOC100696385,LOC108246058,LOC101467604,LOC102237836 coding downstream 881303 9696928 ~ 9703412 (+)
G210938 NA non-coding upstream 103394 8674006 ~ 8674260 (+)
G210866 NA non-coding upstream 152546 8581005 ~ 8625108 (+)
G210862 NA non-coding upstream 210167 8532988 ~ 8567487 (+)
G210837 g6pc3 non-coding upstream 319451 8456750 ~ 8458203 (+)
G210799 NA non-coding upstream 576168 8201281 ~ 8201486 (+)
G210964 NA non-coding downstream 153458 8969083 ~ 8971699 (+)
G210968 NA non-coding downstream 164183 8979808 ~ 8980033 (+)
G210972 NA non-coding downstream 195387 9011012 ~ 9011388 (+)
G211022 NA non-coding downstream 605827 9421452 ~ 9421689 (+)
LOC120550588 NA non-coding downstream 636974 9452599 ~ 9456949 (+)
gngt2b NA other upstream 280000 8496613 ~ 8497654 (+)
dydc2 LOC101484997 other upstream 715377 8057659 ~ 8062277 (+)
LOC120551082 LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580 other upstream 804438 7963369 ~ 7973216 (+)
ormdl3 ormdl3,LOC102783025,LOC100707365,LOC102304808,LOC107387618,LOC106521946 other upstream 1734446 7030818 ~ 7043208 (+)
psmd11b LOC103367354,LOC102209997,LOC101470828,LOC100706559,LOC101174707 other upstream 1817578 6951067 ~ 6960076 (+)
LOC120551795 NA other downstream 227021 9042646 ~ 9050128 (+)
rpl38 NA other downstream 751904 9567529 ~ 9576418 (+)
LOC120551355 LOC102295310,LOC103352803,LOC102796261,LOC107102520 other downstream 1023394 9839019 ~ 9849898 (+)
qki2 LOC104923420,LOC105926446,LOC103481625,LOC106939037,LOC106928957,LOC102292206,LOC100712570,LOC103376616,LOC106516672,LOC107090926,LOC103381788,LOC106519024 other downstream 1068745 9884370 ~ 9898509 (+)
G211151 NA other downstream 1237636 10053261 ~ 10062702 (+)

Expression


Co-expression Network