tha1 (LOC104967451,LOC101478784,LOC102310306,LOC100693061,LOC102204359)


Basic Information

Item Value
gene id tha1
gene name LOC104967451,LOC101478784,LOC102310306,LOC100693061,LOC102204359
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10339617 ~ 10342094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788466.1
CGCCACCTTGAGGCCCACACTTCTCTCTGTGCATGCTGATCAGTCATCCATTAGCTTTCCTTGCAGACAATGATTACAAGTGAACGATCCAAAGTTCGATATAAGTCTCATAAACATTGTTGTAAGAGCAGCATCATGTCTCTGAAAACCTTTTCCGGCAGAGCTTTGTTTAAATTTGTGAACCATGGTCTCGTCGCTTTGAGCAAACCGCTCAGTGCACGAGATGCAGTGGCTGTCGTGTTAGGACCGAGCTCCGCGCGGGGCTACTACAACAACACCGGCAAACCCAGGTGCCCAGGACCGGGCGGGGCGGCCCACGTCCGGGTGGTGGACCTCCGCAGCGACACGGTGACCAAGCCCGGGCCGGCAATGAGGCAGGCCATGGCGGAGGCCGAGGTCGGAGATGACGTGATGAGAGAAGACCCGAGTGTAAACGAGTTACAGAAAATTGCAGCTGATATGTTTGGGATGGAGGCCGCTCTGTTCGTTCCCTCTGGAACCATGAGTAATCTCATCGCAGTGATGGTGCACTGCAGGGAGCGAGGCGACGAGATGATTGTAGGCGATCTGTCACATTTACACATCTATGAGCAAGGAGGGAGCGCACAGCTGGCTGGTGTCCACGCCACCACAGTGACCACCCTCACTGATGGCTCATTTGACCTGGAGCAGCTGGAATCGAAGATCCGCCACGGTTACCCTGACCCCCACTATCCCCGCTCACGCCTCATATGTGttgagaacacacacaacatacagggAGGGCGTGTGCTACCTCTGACCTTCCtgcaggagGTTCGTGCTTTGGCAGATAGATACGGTCTGTCTGTTCACATGGATGGCGCCAGGGTGATGAACGCTGCTGTGGCCCAGGGGGTGCCTCCATCCACCAtactgcagcacacacacactgtgagtgTGTGCCTCTCCAAGGGTTTGGGTGCCCCCGTGGGAACCATGCTAGCTGGACCCCAAGACTTCATATCCCGGGCCGTGCGGTGCCGTAAAGCCCTGGGTGGGGGGATGCGGCAGGCTGGTATACTGGCagcagctggaaaactgtcttTACTAAAGATGGTAGGACGACTGGAGGAGGATCACCACAATGCAAAAACTTTTGCTCAAGCTCTGCTCGACTGTGACCCTCCTCTATTTGCTGTAGACATGGCCGCCGTGGAGACAAACATCCTGCGTTTCCGTCTACAGGAGACCAGTTTAAGCCCCTCTGAGTTCTGTGCTTGCATGAGTGAGGTTGGCGAGGGAGAGGAGGCAGCACTGGGACAGGGGATACAAGTTCTCATGTACCCCCATTTTGAAAATTCAGTTCGGGCTGTATGGCATCTTGGCATTTCCCCTGAAGATACCCAGCTGGCCATCCGGAAAATGCAATTTGTGGCTTCTCAGTTCTTAAAGGATAAAGTCAGGGCCCAGTGAAGCCTGATACTTCTCAAGATGTGTAGTTCAATCACTAGTACTGATCATAGAACATTTTCACATATGAATCTAGAAAGAGACTAAATTATGTCAACACATAACACATCAAATACTGTACAACTGGAGTCACTTTGGATATCTTTATATCATTATTAATTTCATTGAATTCAGACATTTGTAATccttattaaatatattaaaccac

Function

NR:

description
probable low-specificity L-threonine aldolase 2

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01620 ltaE; threonine aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788466.1 True 1639 mRNA 0.52 7 10339617 10342094

Neighbor

gene id symbol gene type direction distance location
LOC120551220 cyth3,LOC103367828,LOC107089207 coding upstream 41192 10280624 ~ 10298425 (+)
timp2a timp2,LOC103367827 coding upstream 70993 10256074 ~ 10268624 (+)
sfxn2 sfxn2 coding upstream 84256 10247698 ~ 10255361 (+)
trim8b trim8 coding upstream 106346 10222323 ~ 10233271 (+)
LOC120551228 LOC104936997,LOC102229976,LOC106927477 coding upstream 249539 10084571 ~ 10090078 (+)
eef2k eef2k coding downstream 3771 10345865 ~ 10361903 (+)
trnal-aag_10 NA coding downstream 21738 10363832 ~ 10363913 (+)
polr3e polr3e coding downstream 21962 10364056 ~ 10381441 (+)
LOC120551201 LOC102314534,LOC101476544,LOC102780776,LOC102207113,LOC100693859 coding downstream 61350 10403444 ~ 10435775 (+)
LOC120551223 NA coding downstream 151048 10493142 ~ 10497988 (+)
G211256 NA non-coding upstream 94802 10243617 ~ 10244815 (+)
LOC120551816 NA non-coding upstream 122396 10217108 ~ 10217221 (+)
LOC120551818 NA non-coding upstream 123138 10216365 ~ 10216479 (+)
LOC120551242 NA non-coding upstream 150644 10186917 ~ 10188973 (+)
G211182 NA non-coding upstream 174091 10165143 ~ 10165526 (+)
G211306 NA non-coding downstream 164232 10506326 ~ 10508324 (+)
G211323 NA non-coding downstream 230531 10572625 ~ 10587852 (+)
G211321 NA non-coding downstream 255133 10597227 ~ 10611899 (+)
G211327 NA non-coding downstream 340949 10683043 ~ 10683247 (+)
G211356 NA non-coding downstream 472650 10814744 ~ 10815203 (+)
socs3b LOC104933891,LOC103372658,LOC104967452 other upstream 10355 10289579 ~ 10329262 (+)
G211164 rnf157 other upstream 274491 10062785 ~ 10065126 (+)
G211151 NA other upstream 276915 10053261 ~ 10062702 (+)
qki2 LOC104923420,LOC105926446,LOC103481625,LOC106939037,LOC106928957,LOC102292206,LOC100712570,LOC103376616,LOC106516672,LOC107090926,LOC103381788,LOC106519024 other upstream 441108 9884370 ~ 9898509 (+)
LOC120551355 LOC102295310,LOC103352803,LOC102796261,LOC107102520 other upstream 489719 9839019 ~ 9849898 (+)
G211301 LOC108248045,LOC103381519 other downstream 107585 10449679 ~ 10531279 (+)
usp54b usp54,LOC102211175,LOC101471098,LOC102784247,LOC103371171,LOC103145175,LOC103381525 other downstream 222127 10564221 ~ 10621412 (+)
sncgb snca,LOC103381528,LOC104922219,LOC103370408,LOC106948771,LOC104951044,LOC106904390 other downstream 360872 10702966 ~ 10715354 (+)
G211336 NA other downstream 381439 10723533 ~ 10725559 (+)
G211354 six3,LOC104922638,LOC103370415 other downstream 459246 10801340 ~ 10803972 (+)

Expression


Co-expression Network