polr3e (polr3e)


Basic Information

Item Value
gene id polr3e
gene name polr3e
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10364056 ~ 10381441 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788501.1
TTATGGGCACGAGCTCCCCCCACGTGTCAGTGTGGAGCAGAGTCAACATGGTAAGCTACCGACACCGACAGACTTCAGCAGACCGAGTTAGTTAGACACTACTCCTACATCTCTACGCACCACATTTCTGGACTGTTCAGACACGGATGAGGTAGCTACAGCGGTACCGTCAAGTGTGCAGGTTGGATCTCTGAGATCTGCTGCTCCTGTTTCATCTCCTCTCCTTGCTCAGTTCACATCAATATGGCGAGCGGGGATGATGATGACCCCATTATAGAGGAGATTGATGTGTATCTTGCCAAAAGCCTTGCAGATAAGCTATATCTTTTCCAGTACCCTGTCCGACCATCCACTATGACCTACGATGATGTCAACCACTTATCAGCGAAGATCAAACCCAAGCAGCAAAGGGTGGAGTTAGAAATGGCAATCGACGCAATGAGCCCCAACTACTGTCGCAGCAAAGGAGAGCAGATAGCTCTGAATGTGGACGGCACGACGTACGACGAAACCAACACCTATTCAGCGAAAATGATGGATAAACAGACCTTCTGCTCCATCCAGGCCACCACCAACACCTCCAGAtatgctgctgctgtgtttcGCAAAGGTGAGCTTCACGTCACACCTCTGACGGGAATCCTCCAGATGAGACCGAGCTTCTCGTACCTGGACAAGGCTGACACCAAAaccagagagagggaggccGCCAATGAAgGTGGCGATTCCTCCCAGGATGAGGCTGAGGAGGACGCCAAGGCCATTACGGTGAGGTTTGCTCGTCCCGAGTCAGAGCAGGCTCGGCAGAGAAGGATCCAGTCGTACGAGTTCCTCCAGAAGAAGCAGGCGGAGGAACCCTGGGTTCACCTACACTACCACGGTGTCAAGGATGGGCGTTCAGAGCATGAAAGGCAGTACATGTTCTGCCAGTCAGTGGACGCCTCAGAGAACTCTGAACTGGTCAAAACTCCTAAAGAGTACCTGGCAATGCTGATGCCCCCTCTTGCAGAGGAAAAAGTTGTGAAGCCAGTTGGTCCCAGTAACGTACTCTCCATGGCTCAACTCCGCACTCTGCCACTGGGAGAGCAAGTCAAGACCCTGATGAAGAATGTCAAGGTGATGCCGTTTGCTAACCTGATGGGCCTGCTCGCCTCTGGCACAGACTCAACCGCAACGCTGCGATGCATCCAACAGGTGGCGCTGCTGGTTCAGGGCAACTGGGTTGTCAAGAGtgatgttttgtATCCTAAAAACACCTGCAGTCCTCACAGTGGTGTCCCTGCTGAAGTGCTCTGTCGTGGCCGGGACTTTGTGATGTGGAGGTTCACTCTGGAGCGCTCTGTGATGAGAAAGGAGATTGCATCCATCATCAAACTTCCTCCAGAGGATGTGAAGGAGTTCCTGGAGCATGTGGCAGTTCCTCGAGTCAACCGGGGCTGGGAGTTCCTGTTGCCTACTGATGGAGACTTCATTAAGAAACACCCAGATGTTGCCCACAGGCAACATATGCTGTGGCTTGGCATCCAGAGCAAGTTGGAAAAGGTCTTTAACTTCTCGAAAGAAGACTTCATGCCAAAGAATTCCCCTCAGCCTGAGCCTGTCCATGTCAGTGGGGAGCAGCGTCTGAAGATGGCTCAGGAGCGTGCTCAAGGAAACCAGTCGTCCCTACAGAAGGACCTGAACGCTAGACGGGCAGGAAGCAGCGTCCACGTCAAACAGGAACCCCTCAGTGACCGGGAAGACGAACCAATggacacctcctcctcctccataccCAACGGTTCTGTCAATGGTTACCCCAGTGCCACCTCACCTGCCTTAGATCACACTAACGGTAACGGAGGGAGCCCCGCCAACACAGCGTCCCTGGAGCTGCAGGACTTTGTGATAAAGACTTTCAGGAAGCATTTTGTACTGACGCTGAATGAGTTCAAGAGGCTGTTTAACCTCCACCTGGCCTCCATGCCAGTGGGACGGAGCGTCTTCCCCTCCATCTCAGACCACATGCTACAGGATGCCATACTGCTCTGCCAGTGCAAACAGATAATGGTGCCTTTTCCTGCTCAGACCACAGCAGCCCCTGATGAACAGAAGGTGTTTGGTTTGTGGGAGACTGGAGAGGAATTCGACAAGGAGTGCTGCATTAGCCACGCAGGGATGTGGTACCTCAAGGGAACAATACCGTCCTGACCTTGAGAGCCTGCTCCCCTGCGGTCACCGTCAGCCAATCAAATCCTCTCCCGGGTGTCCAGTGGGAGGGCAGCCAGAGAGATGAGAGCCAATCACAATCACAGCTCGCCAAGCTCTAAGAGTGGGCGATTGGAGGACAATAGATGTCAGCCGTCGGCTCAGAACAAGAAGCTTTTCTCGTTTTCAACCGAAGCATTTCTGACATAGACAGGAGCACTCTGATGCAGCGCGGAGGATAGAAACTCCTCACATACCCACACTGAGAGCTGGAGTGTCTGAGGAGGAGTATATCAATATAAAAGAATGAAGAAACGGCAAAATATATACGGTTTATCAAAagattttgccatttttttggACCTCatgtttgattatttttgaATTAAACTTTTACCAGATCAGGATGGTGTTTACTATTGAAAGCAAACGTGGCTCAAAGTGCTTTAGGTGTTACTCCTGATTTGTACATTTTGCCAGGGAAAACCATTGACTTTATCCTACCATCAACAAAGCAAACCTAGGGTAGAAAAtctgatttgtttttcatcCATTAATTTAACACATTTTCTCTTTACCTGAAAAATATCAACTGAGTCGAGTATTTATTCCACCTTCAGTAAACCAATTCAAGTGCTGAGCTTTAAGGTCAGATGATGCAGTTGCTTAATTAAAACGTGTTGAGACACTTGAAGAAATGTTGCCAAATTCATGAGTcagcaaacctgaaacaaaaagaggaagaaaaagtcCCTGAGGTCATTTTGCTCATGTACAACTGACATCACTTCATATTTTTGGCAATCATGGACCTGGAAACTGCTACATCTAATGTGGCTTTTCCCACATTTGGAATGTGTACTAAAATATAAAGTTTGAGGATAAAGTGGATTAAATGGCTGATgttgaggtattttttttttttttggttgaatGTACAGTTTCAAATATTTTTCCTTTCATGAGAGACAGATATTGATGATAGCCAATAAAGATGCAATTTCGAATAAGATTTTTGTTGTCATATTTTGATCAAAAATCTGTTAGGACTTTAATCCATTTGTACGAACAAAGTGGAACGGATGTGTTGATGgaccggatcgttggtctggtATAAACGCTGGACTACCATCTATGGGGGTGATGGGGGAGTTGTTGCTATGGATATGCTGGTGTATCGCCATGTGCTGCTATCTTGAGCCTCCGTATAAAAAGTGCCTCACAAGACAAACTCCCTCCCATTCATACACCCAATAACAGGAACATTAATGCTTTGATCCTCATTGAAATACTTCTAAACCTTCAAGAGTGGAAATATAGTAGTACATCAATGACCgctgtatttctttttcattgGCTTGTTACATTGCTCAATAAACATTGTCACCTGTctga

Function

symbol description
polr3e Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC5

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K14721 RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788501.1 True 3582 mRNA 0.48 20 10364056 10381441

Neighbor

gene id symbol gene type direction distance location
trnal-aag_10 NA coding upstream 143 10363832 ~ 10363913 (+)
eef2k eef2k coding upstream 2153 10345865 ~ 10361903 (+)
tha1 LOC104967451,LOC101478784,LOC102310306,LOC100693061,LOC102204359 coding upstream 21962 10339617 ~ 10342094 (+)
LOC120551220 cyth3,LOC103367828,LOC107089207 coding upstream 65631 10280624 ~ 10298425 (+)
timp2a timp2,LOC103367827 coding upstream 95432 10256074 ~ 10268624 (+)
LOC120551201 LOC102314534,LOC101476544,LOC102780776,LOC102207113,LOC100693859 coding downstream 22003 10403444 ~ 10435775 (+)
LOC120551223 NA coding downstream 111701 10493142 ~ 10497988 (+)
LOC120551199 NA coding downstream 118042 10499483 ~ 10505760 (+)
synpo2lb LOC104964751 coding downstream 155901 10537342 ~ 10549611 (+)
myoz1b NA coding downstream 171300 10552741 ~ 10561330 (+)
G211256 NA non-coding upstream 119241 10243617 ~ 10244815 (+)
LOC120551816 NA non-coding upstream 146835 10217108 ~ 10217221 (+)
LOC120551818 NA non-coding upstream 147577 10216365 ~ 10216479 (+)
LOC120551242 NA non-coding upstream 175083 10186917 ~ 10188973 (+)
G211182 NA non-coding upstream 198530 10165143 ~ 10165526 (+)
G211306 NA non-coding downstream 124885 10506326 ~ 10508324 (+)
G211323 NA non-coding downstream 191184 10572625 ~ 10587852 (+)
G211321 NA non-coding downstream 215786 10597227 ~ 10611899 (+)
G211327 NA non-coding downstream 301602 10683043 ~ 10683247 (+)
G211356 NA non-coding downstream 433303 10814744 ~ 10815203 (+)
socs3b LOC104933891,LOC103372658,LOC104967452 other upstream 34794 10289579 ~ 10329262 (+)
G211164 rnf157 other upstream 298930 10062785 ~ 10065126 (+)
G211151 NA other upstream 301354 10053261 ~ 10062702 (+)
qki2 LOC104923420,LOC105926446,LOC103481625,LOC106939037,LOC106928957,LOC102292206,LOC100712570,LOC103376616,LOC106516672,LOC107090926,LOC103381788,LOC106519024 other upstream 465547 9884370 ~ 9898509 (+)
LOC120551355 LOC102295310,LOC103352803,LOC102796261,LOC107102520 other upstream 514158 9839019 ~ 9849898 (+)
G211301 LOC108248045,LOC103381519 other downstream 68238 10449679 ~ 10531279 (+)
usp54b usp54,LOC102211175,LOC101471098,LOC102784247,LOC103371171,LOC103145175,LOC103381525 other downstream 182780 10564221 ~ 10621412 (+)
sncgb snca,LOC103381528,LOC104922219,LOC103370408,LOC106948771,LOC104951044,LOC106904390 other downstream 321525 10702966 ~ 10715354 (+)
G211336 NA other downstream 342092 10723533 ~ 10725559 (+)
G211354 six3,LOC104922638,LOC103370415 other downstream 419899 10801340 ~ 10803972 (+)

Expression


Co-expression Network