LOC120551410


Basic Information

Item Value
gene id LOC120551410
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1430472 ~ 1437585 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788839.1
gggAGAGACACCATGAGACACTAGAGATATCAGAGACATCAAAGACAACAGAACGTCCAAATACACTGACATCAGGATCTTCATATTGAGTTCAGCTGAAATCTGACCATGAAGctggtTTCAGTCGTCCTCCTCCTGCTGGCCCCCCTGTTGACCAGCTGCCAGCAGCTCATTCTGCCGTTGGACTGCAGTGACATTTATAGTAATGACAACAGCCGACCCAGTGGAGTGTACACCATCTATCCCATCGGACCCACGTCTGCTGTCCAGgtgtactgtgacATGGATTCAGAAGGAGGACGGTGGACGGTGTTCCAGAGGAGGATGGACGGCACGGTGAACTTCTACAGGGGCTGGGATCAATACAAGACCGGCTTTGGTATCGCTGCTGGAGAGTACTGGCTCGGTCTGGAGTCTCTCTTCTACATGACTCTGAGGAAAAAGTACGAGCTGCTGGTCGACATGGAGGACTTTGAAGGAAACAAAGTGTTCGCTCGTTACTCCTCGTTCTCCATCGACGCTGAGTCCTCCGGATACACACTGAATGTTTCTGGATTCACTGATGGAGGAGCAGgAGACTCCCTGACTAATCACAACGGACAGAAGTTCTCCACCTTCGACAAAGACCAGGACTCCTCTACTATTACTAACTGTGCCAGATATTACCTGGGAGCGTTCTGGTACAAAAGCTGTTACAATGCAAATCCAAATGGTGTTTATCGTTGGGGGGCTGACAGCACTATCTCTGGTGTGGGAGTGAGTTGGCACCAATGGAAAGGTATTAACTACTCCCTGAAGAACATCAGCATGAAGATCCGTCCTGTGCAGTAGTTCTCCAGGACCAACGTCCAGCAGAATATCAGCTCATCTCTTctgatttctttctctttctctcattaaGCATTTAATCTCACAACAGGTCTTATTTTCCTGAAACTGGGCACCAGCACAAGAAAACCAACTGATGTCTGTAAATCTTGTTACCTTCTGTGATGGTTTAAATCAGTCGCAGCTCGCTGCAACGTGGAAGAAAAGTCAGATGTGTCTCCAGTTGGGCGGCTGCAGCAGGAAAGTAGGGCCCATAATCTTTAAATGGAAACACATATGTAGTCTGATCGGCTGTTAATAACTGCATGAACTGATAACACAAGtctaaaagagagaaagaagtaaagaaaatgaaaagtatAAAAATTTCTTTTCAGTTCAGGACAGCCAGTTGATGTTTGGTGGAGGTTTGAAACTTAACTAATATTAATCTTGATCTGCTGTACGGTGACAATAAATAAGAAGCTGAGCATTAAGATGA
>XM_039788840.1
gggAGAGACACCATGAGACACTAGAGATATCAGAGACATCAAAGACAACAGAACGTCCAAATACACTGACATCAGGATCTTCATATTGAGTTCAGCTGAAATCTGACCATGAAGctggtTTCAGTCGTCCTCCTCCTGCTGGCCCCCCTGTTGACCAGCTGCCAGCAGCTCATTCTGCCGTTGGACTGCAGTGACATTTATAGTAATGACAACAGCCGACCCAGTGGAGTGTACACCATCTATCCCATCGGACCCACGTCTGCTGTCCAGGTGTTCCAGAGGAGGATGGACGGCACGGTGAACTTCTACAGGGGCTGGGATCAATACAAGACCGGCTTTGGTATCGCTGCTGGAGAGTACTGGCTCGGTCTGGAGTCTCTCTTCTACATGACTCTGAGGAAAAAGTACGAGCTGCTGGTCGACATGGAGGACTTTGAAGGAAACAAAGTGTTCGCTCGTTACTCCTCGTTCTCCATCGACGCTGAGTCCTCCGGATACACACTGAATGTTTCTGGATTCACTGATGGAGGAGCAGgAGACTCCCTGACTAATCACAACGGACAGAAGTTCTCCACCTTCGACAAAGACCAGGACTCCTCTACTATTACTAACTGTGCCAGATATTACCTGGGAGCGTTCTGGTACAAAAGCTGTTACAATGCAAATCCAAATGGTGTTTATCGTTGGGGGGCTGACAGCACTATCTCTGGTGTGGGAGTGAGTTGGCACCAATGGAAAGGTATTAACTACTCCCTGAAGAACATCAGCATGAAGATCCGTCCTGTGCAGTAGTTCTCCAGGACCAACGTCCAGCAGAATATCAGCTCATCTCTTctgatttctttctctttctctcattaaGCATTTAATCTCACAACAGGTCTTATTTTCCTGAAACTGGGCACCAGCACAAGAAAACCAACTGATGTCTGTAAATCTTGTTACCTTCTGTGATGGTTTAAATCAGTCGCAGCTCGCTGCAACGTGGAAGAAAAGTCAGATGTGTCTCCAGTTGGGCGGCTGCAGCAGGAAAGTAGGGCCCATAATCTTTAAATGGAAACACATATGTAGTCTGATCGGCTGTTAATAACTGCATGAACTGATAACACAAGtctaaaagagagaaagaagtaaagaaaatgaaaagtatAAAAATTTCTTTTCAGTTCAGGACAGCCAGTTGATGTTTGGTGGAGGTTTGAAACTTAACTAATATTAATCTTGATCTGCTGTACGGTGACAATAAATAAGAAGCTGAGCATTAAGATGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788839.1 True 1309 mRNA 0.46 6 1430472 1437585
XM_039788840.1 False 1270 mRNA 0.46 5 1430472 1437585

Neighbor

gene id symbol gene type direction distance location
LOC120551406 NA coding upstream 3411 1413788 ~ 1427061 (+)
LOC120551423 NA coding upstream 31514 1385363 ~ 1398958 (+)
LOC120551407 NA coding upstream 49641 1378651 ~ 1380831 (+)
LOC120551397 NA coding upstream 127389 1298027 ~ 1303083 (+)
ptenb pten coding upstream 237251 1181045 ~ 1193221 (+)
LOC120551412 NA coding downstream 23689 1461274 ~ 1464607 (+)
LOC120551417 NA coding downstream 52577 1490162 ~ 1497667 (+)
LOC120550771 LOC103374694 coding downstream 116272 1553857 ~ 1592744 (+)
rpp30 rpp30,LOC102790171 coding downstream 210850 1648435 ~ 1663464 (+)
LOC120551573 NA coding downstream 555392 1992977 ~ 2006545 (+)
G208891 NA non-coding upstream 40577 1356116 ~ 1389895 (+)
G208888 NA non-coding upstream 62592 1334982 ~ 1367880 (+)
G208890 NA non-coding upstream 66781 1346805 ~ 1363691 (+)
G208889 acta2,LOC103382302 non-coding upstream 88514 1335562 ~ 1341958 (+)
G208887 acta2,LOC107594158,LOC105896556,LOC101064889,LOC103374497 non-coding upstream 96922 1332746 ~ 1333550 (+)
G208914 NA non-coding downstream 54105 1491690 ~ 1492031 (+)
LOC120550773 NA non-coding downstream 69756 1507341 ~ 1529819 (+)
G208916 NA non-coding downstream 90726 1528311 ~ 1614871 (+)
G208917 NA non-coding downstream 111188 1548773 ~ 1550127 (+)
G208912 NA non-coding downstream 139328 1576913 ~ 1634480 (+)
stambpl1 NA other upstream 102443 1313201 ~ 1328029 (+)
lipf lipa other upstream 174795 1192295 ~ 1255677 (+)
G208867 NA other upstream 225224 1204590 ~ 1205248 (+)
G208852 minpp1 other upstream 336875 1090547 ~ 1093597 (+)
G208851 minpp1,LOC102795090 other upstream 371032 1058842 ~ 1059440 (+)
G208911 NA other downstream 28433 1466018 ~ 1571837 (+)
LOC120550772 NA other downstream 60862 1498447 ~ 1577370 (+)
LOC120550774 NA other downstream 156896 1594481 ~ 1616080 (+)
noc3l noc3l other downstream 179137 1616722 ~ 1636135 (+)
G209284 LOC108247036,LOC103364826,LOC106530008 other downstream 894593 2332178 ~ 2334285 (+)

Expression


Co-expression Network