si:dkey-21e13.3 (LOC103352816,LOC100696385,LOC108246058,LOC101467604,LOC102237836)


Basic Information

Item Value
gene id si:dkey-21e13.3
gene name LOC103352816,LOC100696385,LOC108246058,LOC101467604,LOC102237836
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 9696928 ~ 9703412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789195.1
acacacacacacacacacacaggagagagaacaGCTTTAGGAGGATTTGCTCTGTATTTACAGTAACCCTGGGGGACCGAGCCAGCCGAGTACAGGAAAGACAGACTCTACAGGTGTGTAAGAAAACAAAtagacaattattttatttttgcacaATCCAACAGTGCAGGATGGGAAGGAAGTGCGGCAGTGGGATTAAATAGGCAGTGTATTGAAAGTAGGTTGAAGACTGGCactaaaagaaagaaatctgaCAAAAAGAGAATAACAATAAAGTGCTGTGTATTCTGCACGGAGATGTCAACCTGAGGAAGTTTCACCACCAGAGCAGAATGGGACACCCTAATGTGCCACTCATGTACACTTACGCCCGTTCCCACAAGGATAAACACAAATCCAGTCGACTGCAACCCTACACACCAAACGACAGCCTGAACAATGCCTTAGGCTCTATCAGAGTGCTTGGTTTGGAGCTGATCGCTGACGAACTTAAGCCACATCTGAACACAGTGCTAATCAACATAACGGAAAGAACGAAAGGcgctgctgagcaggtagtggtCAGTGGGATCTTGCCAATTCTGGCCCTGTCTCTGAGGAGCAGGGGGCCCCTTACTCTGCTGACCGCAAAACTGGTAGCTGAACTCGCCAAAGAATCTGTGGTTCGTAAAGGTTTCAGTGACGCGGGTTTGGTTACGGCTTTGCTGTCTGTGCTGACCAGTCCAGACCAAGAACTGCTCCTTCACGCTGTAAGAGCCATCTCACGCATGTCCTATGACAGCTCTAAGCTGCAGGAACTGTTACTACGTCGAGGTGCAGTGCCTCGTCTTGTTGCCATCCTGCTCCGTTTCCCTGAGAATGAGGCTCTGGAGGAAGAGTGCCTTCAGGCCCTCTGTAACCTCAGTGGCATGGGAGTGGCAGAGGAGGCTGGCATGGTCTGGGAGAGAGTTGCATCTGTGAGGCCAGGAGAATCGGTTTTTCACGGCGTTTCTCCTCACACCTGTGGTCTGGACTCCTCTGTgactctggtgtgtgtgtctcaatggGCGCCGGGTCAATACGCGGTCAACATCGAGGTTTTCCAGCgctgctcctcctctttctGGAACCTTCACGGGAACAAACGGAACACTCGTTGGTTCCCGTTCTCCAGCTTGGGAAGCTGTTCACATCTGTACAAGGTGATCAAGTTCTCTACGAGGAAGGTTCCCCGAACTAAAAGTCTGAAGACTCGCGTGTTCCACACTTTCCTCTGACATCTTAAATACTATATATTATAATCTGGTATTATAGTTATATAAAACTCTGAGGGGATTATATAGCCTGTCTAATTGCACCACCAATTATTGGTAGGCTACACACCAAAACATCAGTGGAATGTTTACACACCATAATGCCCACTGGACATTTACGTTATTTGTGTTTAGGACCCCCTCAAAATTGAGATGCTACAGCTCAAGGGGCTATCCTTTCAATACAATTCTAATGAAATGCTACTAAATGTCTCTTGTCTACTGACTATTGACTATTGTTATCATTTTGACTTCTATTTTTTActttagtttattagtttatttgtcagggactatgcacagttcaggccctgtaccagagttagctatacagctaatttacatctgtggtccctgggcAAGGGAGATAAAAGGTTAATATAGATAATACAGACAATACTATCAAAACAGATAGAAACTTAACAAACATATAAAAAGCATTACATCACGTATAAACCAgtatacaaaatatacattccATGTTATAAAAAGTGACAACCCACTCAACGTAAAATAATAGTCAGTCACAGCTCATTTTAGTGATTCAGCTATTATGGGATCCTATGCCATGCagtactgtttgtttttttgtgcaataGTTGAATCAGGAATAAGGAAAACGCTATGAATAAAAAGTAATTATGCATCAGAACATGaaaaccgtaaaaaaaaaattatgttccAATGATGTCCTTGCTGTTGATTTGTACAGAAGTGCTTGAAATAATTGTGAATTTCTTTTCTAGGCAGCAATAATGATCCATGTTATTTTCTACAGTGCAAgcgtttcatttttttactATGGCTCACTCAATTTTCTTGATCTTTGACTCCCACTTTAAACAATAAATGCCTTGACTTTTAAAGCATGTGTCTTTACAGCAGGCGAACAAGGTCATTGTTGTCAGGGGTTAGTTTGTAAATAATGTGAGCACACAAATAACTCATTTGCTGAATTTGTAATAACTGACATGTTTTTATGCAATAAAATTGCTTGTTTTCTTAA

Function

NR:

description
uncharacterized protein LOC110491352 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789195.1 True 2298 mRNA 0.42 5 9696928 9703412

Neighbor

gene id symbol gene type direction distance location
si:ch73-127m5.2 LOC104961255,LOC103352807,LOC101468102 coding upstream 154 9691512 ~ 9696774 (+)
kif19 kif19 coding upstream 6562 9645691 ~ 9690366 (+)
ttyh2 ttyh2,LOC102794331 coding upstream 52183 9577390 ~ 9644745 (+)
hs3st3b1b hs3st3b1,LOC101472659,LOC100710426 coding upstream 856482 8819762 ~ 8840446 (+)
LOC120550936 LOC100695060,LOC101472949,LOC102791232,LOC102301473 coding upstream 881303 8777654 ~ 8815625 (+)
si:dkey-21c1.4 LOC102796569,LOC101161774 coding downstream 147311 9850723 ~ 9858242 (+)
tbcc tbcc,LOC102796566 coding downstream 162387 9865799 ~ 9870812 (+)
prph2a prph2,LOC101069021 coding downstream 168717 9872129 ~ 9879074 (+)
timm23a timm23 coding downstream 200718 9904130 ~ 9907939 (+)
syt15 LOC102290952 coding downstream 214709 9918121 ~ 9923067 (+)
G211030 NA non-coding upstream 199405 9496011 ~ 9497523 (+)
LOC120550588 NA non-coding upstream 239979 9452599 ~ 9456949 (+)
G211022 NA non-coding upstream 275239 9421452 ~ 9421689 (+)
G210972 NA non-coding upstream 685540 9011012 ~ 9011388 (+)
G210968 NA non-coding upstream 716895 8979808 ~ 8980033 (+)
G211084 NA non-coding downstream 125437 9828849 ~ 9830042 (+)
G211085 NA non-coding downstream 131648 9835060 ~ 9838125 (+)
G211130 NA non-coding downstream 223242 9926654 ~ 9984696 (+)
G211139 NA non-coding downstream 250463 9953875 ~ 9954681 (+)
G211157 NA non-coding downstream 307469 10010881 ~ 10011167 (+)
rpl38 NA other upstream 120510 9567529 ~ 9576418 (+)
LOC120551795 NA other upstream 646800 9042646 ~ 9050128 (+)
gngt2b NA other upstream 1199274 8496613 ~ 8497654 (+)
dydc2 LOC101484997 other upstream 1634651 8057659 ~ 8062277 (+)
LOC120551082 LOC104957044,LOC103364391,LOC100710506,LOC102194388,LOC102291580 other upstream 1723712 7963369 ~ 7973216 (+)
LOC120551355 LOC102295310,LOC103352803,LOC102796261,LOC107102520 other downstream 135607 9839019 ~ 9849898 (+)
qki2 LOC104923420,LOC105926446,LOC103481625,LOC106939037,LOC106928957,LOC102292206,LOC100712570,LOC103376616,LOC106516672,LOC107090926,LOC103381788,LOC106519024 other downstream 180958 9884370 ~ 9898509 (+)
G211151 NA other downstream 349849 10053261 ~ 10062702 (+)
G211164 rnf157 other downstream 359373 10062785 ~ 10065126 (+)
socs3b LOC104933891,LOC103372658,LOC104967452 other downstream 586167 10289579 ~ 10329262 (+)

Expression


Co-expression Network