XLOC_000005 (hikeshi)


Basic Information

Item Value
gene id XLOC_000005
gene name hikeshi
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 36552 ~ 39191 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000016
ctctctgtctctctctctctgtctctctctctctctctctctctcctctgctctTCGTCGCGCTTCTCTGGTTTGAAATCTGCTCTATTTCCCTCTTCCTGCTGTTAGGCGGAAGTTCCACGCAGGATCGACCAATCAGCGACGCGCGGTTGTGTTTTGTTTCCGGGGTCAGAGTGTCTGCTAATGGAAGTTTCTAGCAGTCGGCAGCATGTGTGAAGCTGCGAGTTATTATCATTAGCATCAGCATTATCAGAGCGCTTCCGCTGTTTCCCCGGATGAGTTTGTGAGAGGCTGAGGATGTTCGGCTGTTTAGTCGCGGGCAGACTGgtgcaGACAGATGCACAGCAGGTCGCCTCTGATAAGTTCGTCTTCAATCTGCCGGATTATGAGCATGTCAATCATGTAGTGGTGTTCCTGCTGGGCACGGTGCCCTTCCCGGAGGGCCTAGGCGGCGCGGTGTACCTGTGTGTGCCGGGCGGGGCAGCGGGGCAGGTGTGGCAGCTGCTGGGCTTCATCACCAACGAGAAACCCAGCGCCATCTTCAGGATCTCCGGGCTGAAAGCAGGTGAGGGCAGCTCTCACCCGTTCGGGATGATGGACGCTCCTGCGGCCCCCTCTATGGCTCAGGTGGGCGTGTCTGTGGAGGGTTTACACCTGCTGGCTCAGCAGACTCCGGTCTCCAGCTCTGCCGTCTCCACACTGGACTCCTTCACACAGtTCACACAGAAGATGCTGGACAGTTTGTTCAACTTCACCTCCTCCTTTGCGCTGTCGCAGTCACAGATGAGCCCGAACCCGTCAGAGATGTTCATCCCGGCCAGCTCCATCCgcagatgGTATGAAAACTTCCAGAGGCGATTGATGCAGAACCCAAACTTCTGGAAGACATGAGTCactcagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtaagaCAGATCCTCTGCTGCCGGAGCTCACACTCCTCTGTCAGATCAGACTCTCGGATGTTTTCTAACACACTGAACTCCTGAATAAAGTCTGCAGCTGATTTTGTA
>TCONS_00000017
GTCTGCTAATGGAAGTTTCTAGCAGTCGGCAGCATGTGTGAAGCTGCGAGTTATTATCATTAGCATCAGCATTATCAGAGCGCTTCCGCTGTTTCCCCGGATGAGTTTGTGAGAGGCTGAGGATGTTCGGCTGTTTAGTCGCGGGCAGACTGgtgcaGACAGATGCACAGCAGGTCGCCTCTGATAAGTTCGTCTTCAATCTGCCGGATTATGAGCATGTCAATCATGTAGTGGTGTTCCTGCTGGGCACGGTGCCCTTCCCGGAGGGCCTAGGCGGCGCGGTGTACCTGTGTGTGCCGGGCGGGGCAGCGGGGCAGGTGTGGCAGCTGCTGGGCTTCATCACCAACGAGAAACCCAGCGCCATCTTCAGGATCTCCGGGCTGAAAGCAGGTCAGCAGCAGCTCCACCGCTCAGgagcagcgcacacacacacacacacacacacacacacagagggacactaaccctaacccacaGCAGACGAGAAGAGGGCTAATGATggaaccgtgtgtgtgtgtgtgtggactcatGATCAGCACTCGATGGAGAATaatcaggagtgtgtgtgtgtgtgtttgtgtgactgCAGAGTACAAGAGTCTGACAgcgcagcgc

Function

symbol description
hikeshi Predicted to enable Hsp70 protein binding activity and nuclear import signal receptor activity. Predicted to be involved in cellular response to heat and protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 13. Orthologous to human HIKESHI (heat shock protein nuclear import factor hikeshi).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0015031 protein transport biological_process
GO:0034605 cellular response to heat biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030544 Hsp70 protein binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-050417-34 Predicted to enable Hsp70 protein binding activity and nuclear import signal receptor activity. Predicted to be involved in cellular response to heat and protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 13. Orthologous to human HIKESHI (heat shock protein nuclear import factor hikeshi).

Ensembl:

ensembl_id ENSDARG00000104071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000016 False 1047 mRNA 0.55 5 36552 39191
TCONS_00000017 True 615 lncRNA 0.56 2 36727 38446

Neighbor

gene id symbol gene type direction distance location
XLOC_000004 eed coding upstream 2222 27690 ~ 34330 (+)
XLOC_000003 CU651657.1 coding upstream 9297 25585 ~ 27255 (+)
XLOC_000002 nfkbiz coding upstream 13163 18716 ~ 23389 (+)
XLOC_000001 cep97 coding upstream 20179 11822 ~ 16373 (+)
XLOC_000006 f7l coding downstream 70607 109798 ~ 119146 (+)
XLOC_000007 f7 coding downstream 80769 119960 ~ 125246 (+)
XLOC_000008 f7i coding downstream 88059 127250 ~ 134079 (+)
XLOC_000009 f10 coding downstream 96712 135903 ~ 142469 (+)
XLOC_000010 prozb coding downstream 105093 144284 ~ 151998 (+)
XLOC_000011 NA non-coding downstream 117601 156792 ~ 157282 (+)
XLOC_000018 NA non-coding downstream 316290 355481 ~ 358562 (+)
XLOC_000024 dre-mir-155 non-coding downstream 537253 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 755785 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 976621 1015812 ~ 1033638 (+)

Expression


Co-expression Network