hpdl (hpdl)


Basic Information

Item Value
gene id hpdl
gene name hpdl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11736977 ~ 11739509 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039789361.1
CGTCTCCTTTAAAAACGTCACGTCGCAACATGGCAGCTTTATTGACTCGGTTACACCACATTTCGCTCCACGTTTCTAATGCGGAGAAAATAGCTAACGACCTTGTCTCTAAATTCAAGTTTAGTTTGTTTGCCACCAGACTAACCGACAGGTTCAGGCAGCTGGCTTTTAGAAAAGGAGCGGCTGTTTTCATTGTGAATGAGAGACCAAAAGAGAGTAGTGTGGGACTGAATGAAGAGCCACGCCGGGTCAGCGTGGGGAAATACAACCAGGATCATTCTGCTAAATGTCTTTACGATGCCAGCCTACCTTACCCGGTGGATACTGTAAGCAACGTGTGTTTCGAGGTGGATGATGTGGAAAGGTCATTTAGGACTCTTCGCCATAAGGGATGCAATTTCCTCGTGCCGCCCACGACAGTTCAGGACGAGCGTGGTCTCGTCACATACTCTGTGGTTAAATCTATCGTGGGAAATGTGTGCCACACGCTAATTGACAGGACCAACTATAATGGAAGCTTCTTGCCTGGATTTGATGTCATTGAAAAGGACTGCGGCTTGCCAGCAGAGGACATGTCTTGTCCAATCACACATTTTGATCACATAACTTATGTCTGTCCCAGGAAAACCACCCACCAGGTCATGAGGTGGTATGAGAAGCTCTTTGGTTTTCAGAGGTTTTTCATTGATAGTGATGAAGATGTGGACGAAGGTTTTGTCATAAAGCAGAATGGCATTGGACTTCGCCTTACTGCCATGGAGTACTGGAAATGCAGCAAAGCAGGCCTCATTCTCTCAGCCGTGGACAAAAAAGTGCCCGACTGCAAGTTTGTCATTGCTGAATCACTGCCTAAACAAGGCAGGAATCAGGTTGACACCTTCTTGGAGCAGCATGACGGCCCAGGGATCCAGCACATTGGGCTGTACACACAAAACATTGTTTCTTCTGCACAAGCGATGGCTGATGCTGGTGTTCACTTTTTCTCCCCGCCTCATGCCTACTACACTGGGGTGGGAAAACAGCAGGAGATAGAGGAGGCAGGACATAACCCCCAGATGCTGGCGCAGCATGGCATTCTcctagacacacagacagcatcCAGTGAAAACAGAGGATACCTACTCCAAGTGTTCACCAAGCCCATCTTTGCAGAGGAGACCTTCTTCCTCGAGCTAATAGAGCGAAGAGGGGCGACAGGTTTTGGTGAGGGGAACATCAGAGCGCTGTGGAGGTCGGTGCAGGCGCACATGGAGAATCAGGTGGGGGGTTCTCAAGTAGAGGGATCCCCAAAAACTGTGCAAACTGCTGTGTATTAGTCAATTCAGATATGTTTAACTGGAAAAACATGtataatgtataaaatataatatatttactgaatAGTTTACTAAAAGTGCTTTTTTGTGGTAACAAGTTTGTGATGAATCTTAAGTTACATGTTGCACTGCTTACAAGTACAAATTACATATTGTATTAATACTTATCTTTGGAGATGACTGAACAGATGAAGACGTAAAACAGCACTATTTTTTACTTGAAATCTTGTGTCAAAGCAACTGACCGACTCCACAGCATCTGTTCCTCAATAAATCTGTTAAATCTTA

Function

symbol description
hpdl Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within aromatic amino acid family metabolic process. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human HPDL (4-hydroxyphenylpyruvate dioxygenase like).

NR:

description
PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like protein isoform X1

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function

KEGG:

id description
K24788 HPDL; 4-hydroxyphenylpyruvate dioxygenase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039789361.1 True 1604 mRNA 0.45 5 11736977 11739509

Neighbor

gene id symbol gene type direction distance location
ctbp2l ctbp2,LOC104925227,LOC100698659,LOC105926449,LOC107387783,LOC102290675,LOC103381637,LOC103150461,LOC101467118,LOC102209184,LOC102797539,LOC103481571 coding upstream 18534 11620641 ~ 11718443 (+)
mmp21 mmp21 coding upstream 149347 11583189 ~ 11587630 (+)
uros uros coding upstream 153863 11579205 ~ 11583114 (+)
dhx32a dhx32 coding upstream 159345 11570717 ~ 11577632 (+)
LOC120550601 adam12,LOC104959042 coding upstream 167697 11496582 ~ 11569280 (+)
fam53b fam53b,LOC104942014 coding downstream 3698 11743207 ~ 11758918 (+)
LOC120551790 hnrnpab,LOC103359197,LOC100707314 coding downstream 51878 11791387 ~ 11792699 (+)
oat oat coding downstream 54605 11794114 ~ 11802996 (+)
LOC120551667 chst15 coding downstream 108776 11848285 ~ 11889417 (+)
LOC120550610 chst15 coding downstream 158605 11898114 ~ 11919380 (+)
G211666 zranb1,LOC104942016 non-coding upstream 1726 11733627 ~ 11735251 (+)
G211665 NA non-coding upstream 9551 11725141 ~ 11727426 (+)
LOC120550877 NA non-coding upstream 279416 11453221 ~ 11457561 (+)
G211417 NA non-coding upstream 656567 11080115 ~ 11080410 (+)
LOC120550777 NA non-coding upstream 790334 10944929 ~ 10946643 (+)
G211706 NA non-coding downstream 82295 11821804 ~ 11822046 (+)
G211710 NA non-coding downstream 99492 11839001 ~ 11839311 (+)
G211711 NA non-coding downstream 100035 11839544 ~ 11839743 (+)
G211762 acadsb non-coding downstream 296047 12035556 ~ 12036431 (+)
G211778 NA non-coding downstream 356523 12096032 ~ 12097836 (+)
LOC120550876 fam196a other upstream 336399 11363355 ~ 11400578 (+)
chac2 chac2,LOC102792373 other upstream 658970 11073477 ~ 11078007 (+)
cript cript other upstream 809751 10922423 ~ 10927226 (+)
kcng3 LOC104951029,LOC104923031 other upstream 824879 10819058 ~ 10912098 (+)
G211777 NA other downstream 348176 12087685 ~ 12088135 (+)
LOC120551485 adamts14,LOC103367006 other downstream 811068 12550577 ~ 12599464 (+)
LOC120551603 zmiz1,LOC102192508,LOC102310819 other downstream 981326 12720835 ~ 12827609 (+)
LOC120550681 comtd1 other downstream 1420467 13159976 ~ 13166392 (+)
zgc:153981 LOC104943448,LOC101465490,LOC103355374,LOC100701713,LOC104930939 other downstream 1441486 13180995 ~ 13184797 (+)

Expression


Co-expression Network